Wall clock time and date at job start Mon Mar 30 2020 05:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00190 * 2 1 4 4 H 1.48497 * 109.47345 * 270.00720 * 3 2 1 5 5 H 1.48502 * 109.47047 * 30.00856 * 3 2 1 6 6 H 1.48502 * 109.46987 * 149.99960 * 3 2 1 7 7 C 1.37876 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00526 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99700 * 179.97438 * 7 2 1 10 10 C 1.50705 * 109.46831 * 180.02562 * 9 7 2 11 11 C 1.38370 * 120.12644 * 99.98306 * 10 9 7 12 12 C 1.37630 * 120.02441 * 180.02562 * 11 10 9 13 13 C 1.39036 * 120.79537 * 359.63571 * 12 11 10 14 14 C 1.39225 * 118.87388 * 0.54926 * 13 12 11 15 15 C 1.38095 * 120.22684 * 359.61386 * 14 13 12 16 16 Cl 1.73602 * 119.83466 * 180.02562 * 15 14 13 17 17 O 1.36126 * 111.25608 * 180.58294 * 13 12 11 18 18 C 1.43763 * 109.29037 * 341.40480 * 17 13 12 19 19 C 1.51649 * 132.23150 * 179.62125 * 12 11 10 20 20 H 0.97002 * 119.99401 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.46630 * 60.00435 * 9 7 2 22 22 H 1.08997 * 109.47420 * 300.00101 * 9 7 2 23 23 H 1.08007 * 119.99648 * 0.02562 * 11 10 9 24 24 H 1.07994 * 119.88918 * 179.59589 * 14 13 12 25 25 H 1.08993 * 110.74744 * 269.24074 * 18 17 13 26 26 H 1.08995 * 110.90665 * 145.96355 * 18 17 13 27 27 H 1.09002 * 110.94508 * 77.55895 * 19 12 11 28 28 H 1.08997 * 110.93949 * 313.90219 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0138 -2.6150 -0.0023 11 6 4.4404 -3.1998 -1.1815 12 6 4.8982 -4.4977 -1.1802 13 6 4.9464 -5.2344 -0.0020 14 6 4.5118 -4.6410 1.1801 15 6 4.0498 -3.3397 1.1758 16 17 3.5111 -2.6096 2.6558 17 8 5.4405 -6.4838 -0.2210 18 6 5.3461 -6.7930 -1.6218 19 6 5.4144 -5.3976 -2.2864 20 1 -0.4849 0.8401 0.0004 21 1 3.8751 -0.6805 0.8889 22 1 3.8746 -0.6801 -0.8911 23 1 4.4142 -2.6377 -2.1034 24 1 4.5359 -5.2004 2.1035 25 1 4.3980 -7.2816 -1.8463 26 1 6.1835 -7.4137 -1.9404 27 1 6.4405 -5.1414 -2.5502 28 1 4.7660 -5.3505 -3.1612 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259349583.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:33 Heat of formation + Delta-G solvation = -38.716375 kcal Electronic energy + Delta-G solvation = -14322.690634 eV Core-core repulsion = 11749.852210 eV Total energy + Delta-G solvation = -2572.838423 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.02399 -39.03922 -37.08980 -35.16493 -33.52583 -32.92406 -30.05308 -29.04318 -25.02867 -24.10502 -22.95357 -21.65420 -18.93157 -18.50517 -17.75760 -17.08741 -16.63373 -15.94398 -15.23483 -15.05161 -14.61984 -14.33303 -14.26121 -13.95376 -13.45944 -13.32726 -12.67468 -12.64282 -12.47162 -12.23133 -12.03789 -11.87133 -11.69140 -11.47331 -11.14802 -10.72585 -9.75631 -8.92108 -8.23608 -6.26410 0.14253 0.33891 1.20144 1.37600 1.40779 1.51523 2.39119 2.40003 2.63843 3.11250 3.49614 3.69095 3.89008 4.13592 4.21446 4.25139 4.51551 4.63015 4.84063 4.86744 4.94752 5.03538 5.09161 5.12888 5.32444 5.45396 5.61317 5.69413 6.15002 6.31534 6.77287 7.35467 8.93081 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.032099 B = 0.007646 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.084497 B = 3661.086321 C = 4146.821078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.012 3.988 3 Si 0.939 3.061 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.247 1.247 7 C -0.499 4.499 8 H 0.028 0.972 9 C 0.024 3.976 10 C -0.079 4.079 11 C -0.071 4.071 12 C -0.170 4.170 13 C 0.088 3.912 14 C -0.139 4.139 15 C -0.016 4.016 16 Cl -0.065 7.065 17 O -0.317 6.317 18 C 0.047 3.953 19 C -0.103 4.103 20 H 0.265 0.735 21 H 0.034 0.966 22 H 0.037 0.963 23 H 0.144 0.856 24 H 0.144 0.856 25 H 0.084 0.916 26 H 0.140 0.860 27 H 0.110 0.890 28 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.481 -10.366 -3.680 17.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.184 4.184 3 Si 0.762 3.238 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.171 1.171 7 C -0.537 4.537 8 H 0.047 0.953 9 C -0.013 4.013 10 C -0.080 4.080 11 C -0.089 4.089 12 C -0.171 4.171 13 C 0.042 3.958 14 C -0.158 4.158 15 C -0.043 4.043 16 Cl -0.036 7.036 17 O -0.232 6.232 18 C -0.027 4.027 19 C -0.140 4.140 20 H 0.074 0.926 21 H 0.052 0.948 22 H 0.055 0.945 23 H 0.161 0.839 24 H 0.162 0.838 25 H 0.103 0.897 26 H 0.158 0.842 27 H 0.128 0.872 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.383 -10.370 -3.400 17.269 hybrid contribution -0.501 0.982 0.304 1.144 sum 12.882 -9.388 -3.096 16.238 Atomic orbital electron populations 1.70052 1.08189 1.27938 1.52894 1.25820 0.95423 1.02856 0.94332 0.85825 0.79675 0.78874 0.79414 1.18676 1.21292 1.17085 1.20946 0.90133 0.92808 1.49811 0.95325 1.18633 0.94852 0.89814 0.98024 1.20001 0.98109 0.98035 0.91875 1.20285 0.97314 0.93765 0.97531 1.21194 1.03974 0.95324 0.96619 1.19288 0.96202 0.86016 0.94256 1.19987 1.04095 0.93554 0.98200 1.20392 1.02244 0.93559 0.88099 1.98338 1.88717 1.83080 1.33451 1.86764 1.77522 1.29046 1.29872 1.24178 1.05186 0.97130 0.76231 1.21915 1.03738 0.91592 0.96721 0.92590 0.94788 0.94520 0.83865 0.83795 0.89742 0.84222 0.87174 0.87214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.45 13.96 21.45 0.30 -59.15 15 2 C 0.01 0.72 5.47 84.65 0.46 1.18 15 3 Si 0.94 43.74 27.47 68.60 1.88 45.63 15 4 H -0.26 -11.53 7.11 99.48 0.71 -10.83 15 5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 15 6 H -0.25 -10.79 6.54 99.48 0.65 -10.14 15 7 C -0.50 -28.42 9.41 25.60 0.24 -28.18 15 8 H 0.03 1.84 7.98 -2.91 -0.02 1.81 15 9 C 0.02 1.13 3.64 29.11 0.11 1.23 15 10 C -0.08 -3.31 5.08 -19.80 -0.10 -3.41 15 11 C -0.07 -2.48 9.66 22.16 0.21 -2.27 15 12 C -0.17 -5.08 6.27 -19.51 -0.12 -5.21 15 13 C 0.09 2.79 7.04 22.70 0.16 2.95 15 14 C -0.14 -4.84 9.84 22.47 0.22 -4.62 15 15 C -0.02 -0.65 6.29 22.27 0.14 -0.51 15 16 Cl -0.06 -2.63 27.31 -2.72 -0.07 -2.70 15 17 O -0.32 -8.59 11.10 -94.99 -1.05 -9.64 15 18 C 0.05 0.81 8.01 72.57 0.58 1.39 15 19 C -0.10 -1.95 7.11 30.74 0.22 -1.73 15 20 H 0.27 15.52 8.31 -92.71 -0.77 14.75 15 21 H 0.03 1.61 6.42 -2.39 -0.02 1.60 15 22 H 0.04 1.62 7.44 -2.39 -0.02 1.60 15 23 H 0.14 4.50 8.04 -2.91 -0.02 4.48 15 24 H 0.14 4.45 8.06 -2.91 -0.02 4.42 15 25 H 0.08 1.32 8.14 -2.39 -0.02 1.30 15 26 H 0.14 1.41 8.14 -2.39 -0.02 1.39 15 27 H 0.11 1.66 8.14 -2.39 -0.02 1.64 15 28 H 0.11 1.71 8.14 -2.39 -0.02 1.69 15 Total: -1.00 -68.18 257.24 4.29 -63.89 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: 1.11 Total: 1.13 kcal Atomic # 6 Polarization: -41.28 SS G_CDS: 2.12 Total: -39.16 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: 0.30 Total: -59.15 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -1.05 Total: -9.64 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.63 kcal Atomic # 17 Polarization: -2.63 SS G_CDS: -0.07 Total: -2.70 kcal Total: -68.18 4.29 -63.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259349583.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.171 kcal (2) G-P(sol) polarization free energy of solvation -68.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds