Wall clock time and date at job start Mon Mar 30 2020 05:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99646 * 2 1 4 4 H 1.48500 * 109.47375 * 274.99075 * 3 2 1 5 5 H 1.48502 * 109.47057 * 34.99023 * 3 2 1 6 6 H 1.48501 * 109.46992 * 154.99160 * 3 2 1 7 7 C 1.37875 * 120.00578 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00304 * 189.51620 * 7 2 1 9 9 C 1.50699 * 119.99589 * 9.51123 * 7 2 1 10 10 H 1.08997 * 109.63479 * 305.21426 * 9 7 2 11 11 C 1.53514 * 109.55141 * 65.46632 * 9 7 2 12 12 S 1.81606 * 107.35333 * 192.28962 * 11 9 7 13 13 C 1.76458 * 102.65331 * 313.56814 * 12 11 9 14 14 C 1.39602 * 117.70849 * 193.48680 * 13 12 11 15 15 C 1.37757 * 120.65791 * 181.70324 * 14 13 12 16 16 C 1.38521 * 119.49020 * 359.51105 * 15 14 13 17 17 F 1.35105 * 120.02120 * 179.83626 * 16 15 14 18 18 C 1.37945 * 119.95529 * 359.85561 * 16 15 14 19 19 C 1.38144 * 122.29070 * 13.91791 * 13 12 11 20 20 C 1.50050 * 124.71283 * 357.14336 * 19 13 12 21 21 H 0.96999 * 120.00880 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.87925 * 72.83502 * 11 9 7 23 23 H 1.08996 * 109.87972 * 311.75223 * 11 9 7 24 24 H 1.08003 * 119.67257 * 1.47313 * 14 13 12 25 25 H 1.07996 * 120.25470 * 179.78759 * 15 14 13 26 26 H 1.08001 * 119.48721 * 180.02562 * 18 16 15 27 27 H 1.09000 * 108.67381 * 145.06210 * 20 19 13 28 28 H 1.09006 * 108.67084 * 262.96927 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.3911 2.1075 -1.3947 5 1 1.5031 2.6200 0.8029 6 1 3.5954 1.4121 0.5919 7 6 2.0046 -1.1940 -0.0005 8 1 3.0734 -1.2004 0.1541 9 6 1.2667 -2.4900 -0.2168 10 1 0.4582 -2.5766 0.5091 11 6 0.6868 -2.5201 -1.6379 12 16 -0.4813 -3.9084 -1.7170 13 6 0.4250 -5.2197 -0.9600 14 6 -0.0660 -6.5181 -1.1082 15 6 0.5738 -7.5832 -0.5134 16 6 1.7213 -7.3607 0.2300 17 9 2.3556 -8.3970 0.8207 18 6 2.2157 -6.0802 0.3670 19 6 1.5782 -4.9961 -0.2331 20 6 2.2265 -3.6553 -0.0500 21 1 -0.4851 0.8400 -0.0004 22 1 1.4880 -2.6681 -2.3620 23 1 0.1662 -1.5853 -1.8456 24 1 -0.9586 -6.6888 -1.6918 25 1 0.1863 -8.5845 -0.6294 26 1 3.1112 -5.9154 0.9479 27 1 2.6595 -3.6105 0.9493 28 1 3.0294 -3.5533 -0.7801 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259409577.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:21 Heat of formation + Delta-G solvation = -50.594146 kcal Electronic energy + Delta-G solvation = -14265.351938 eV Core-core repulsion = 11706.414952 eV Total energy + Delta-G solvation = -2558.936986 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.86757 -40.21741 -37.09841 -34.16075 -31.96885 -31.18148 -27.92201 -27.10555 -23.82281 -23.52533 -21.35002 -18.76463 -18.27695 -17.97204 -17.39556 -16.60421 -16.48130 -16.08002 -15.34306 -14.75126 -14.69977 -14.43488 -14.15523 -13.87232 -13.64213 -13.02622 -12.86035 -12.78242 -12.29386 -12.26586 -12.05295 -11.80383 -11.21574 -10.77557 -10.53723 -10.32100 -9.84442 -8.27565 -8.17465 -6.30956 0.04596 0.20429 0.82204 1.41179 1.44659 1.53734 1.62661 2.40746 2.49253 3.12220 3.25373 3.71894 3.83601 4.15123 4.27333 4.31474 4.40813 4.63369 4.74289 4.82914 4.86088 4.97653 5.11013 5.17713 5.40440 5.45010 5.68292 5.77687 5.85980 6.18242 6.78972 7.37737 8.88505 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.040207 B = 0.006911 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.236617 B = 4050.389249 C = 4612.183946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.021 3.979 3 Si 0.954 3.046 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.533 4.533 8 H 0.063 0.937 9 C 0.049 3.951 10 H 0.012 0.988 11 C -0.065 4.065 12 S -0.167 6.167 13 C -0.095 4.095 14 C -0.076 4.076 15 C -0.135 4.135 16 C 0.084 3.916 17 F -0.142 7.142 18 C -0.149 4.149 19 C -0.060 4.060 20 C -0.075 4.075 21 H 0.264 0.736 22 H 0.074 0.926 23 H 0.091 0.909 24 H 0.154 0.846 25 H 0.171 0.829 26 H 0.145 0.855 27 H 0.076 0.924 28 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.954 -11.625 -2.160 11.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.180 4.180 3 Si 0.780 3.220 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.572 4.572 8 H 0.082 0.918 9 C 0.029 3.971 10 H 0.030 0.970 11 C -0.214 4.214 12 S 0.079 5.921 13 C -0.208 4.208 14 C -0.099 4.099 15 C -0.155 4.155 16 C 0.062 3.938 17 F -0.121 7.121 18 C -0.169 4.169 19 C -0.066 4.066 20 C -0.112 4.112 21 H 0.073 0.927 22 H 0.092 0.908 23 H 0.110 0.890 24 H 0.172 0.828 25 H 0.188 0.812 26 H 0.163 0.837 27 H 0.095 0.905 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.666 -11.422 -2.673 11.749 hybrid contribution 1.559 1.088 0.707 2.029 sum 2.225 -10.333 -1.966 10.751 Atomic orbital electron populations 1.70095 1.07359 1.27729 1.49739 1.25733 0.95489 1.02491 0.94253 0.85599 0.78947 0.79322 0.78174 1.20028 1.21258 1.18984 1.21384 0.94504 0.91244 1.50108 0.91834 1.18577 0.94506 0.93170 0.90826 0.97025 1.23940 0.98314 0.96131 1.02972 1.84975 1.27492 1.05848 1.73800 1.21678 0.98768 0.97553 1.02781 1.20996 1.00473 0.88980 0.99461 1.21231 0.94663 1.01203 0.98370 1.17587 0.94226 0.83877 0.98141 1.91476 1.81505 1.56867 1.82234 1.21315 1.02192 0.90712 1.02730 1.19813 0.94557 0.96138 0.96114 1.20347 0.98648 0.89664 1.02588 0.92675 0.90782 0.89030 0.82822 0.81190 0.83689 0.90526 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.84 12.24 21.45 0.26 -50.58 15 2 C 0.02 1.10 5.09 84.65 0.43 1.54 15 3 Si 0.95 41.48 29.55 68.60 2.03 43.51 15 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 15 5 H -0.29 -12.44 7.11 99.48 0.71 -11.74 15 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 7 C -0.53 -27.58 8.48 25.60 0.22 -27.37 15 8 H 0.06 3.18 7.77 -2.91 -0.02 3.16 15 9 C 0.05 2.35 1.87 -11.74 -0.02 2.33 15 10 H 0.01 0.64 7.99 -2.39 -0.02 0.62 15 11 C -0.07 -2.95 5.74 72.15 0.41 -2.53 15 12 S -0.17 -6.59 21.99 -56.49 -1.24 -7.83 15 13 C -0.09 -3.37 6.05 22.58 0.14 -3.23 15 14 C -0.08 -2.13 9.65 22.49 0.22 -1.91 15 15 C -0.13 -3.30 10.04 22.22 0.22 -3.07 15 16 C 0.08 2.32 7.28 22.27 0.16 2.48 15 17 F -0.14 -3.79 17.27 44.97 0.78 -3.02 15 18 C -0.15 -4.56 9.46 22.47 0.21 -4.35 15 19 C -0.06 -2.15 5.77 -19.82 -0.11 -2.27 15 20 C -0.08 -2.99 4.50 29.28 0.13 -2.86 15 21 H 0.26 14.05 8.31 -92.71 -0.77 13.28 15 22 H 0.07 3.13 8.08 -2.39 -0.02 3.11 15 23 H 0.09 4.64 6.77 -2.39 -0.02 4.63 15 24 H 0.15 3.61 8.05 -2.91 -0.02 3.59 15 25 H 0.17 2.93 8.06 -2.91 -0.02 2.91 15 26 H 0.15 3.94 8.01 -2.91 -0.02 3.92 15 27 H 0.08 2.94 8.00 -2.39 -0.02 2.92 15 28 H 0.08 2.90 8.14 -2.38 -0.02 2.88 15 Total: -1.00 -56.29 255.47 5.00 -51.29 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 1.16 Total: 7.88 kcal Atomic # 6 Polarization: -43.26 SS G_CDS: 2.01 Total: -41.25 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.26 Total: -50.58 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.78 Total: -3.02 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Atomic # 16 Polarization: -6.59 SS G_CDS: -1.24 Total: -7.83 kcal Total: -56.29 5.00 -51.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259409577.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.698 kcal (2) G-P(sol) polarization free energy of solvation -56.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds