Wall clock time and date at job start Mon Mar 30 2020 05:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00109 * 2 1 4 4 H 1.48501 * 109.47415 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47059 * 300.00277 * 3 2 1 6 6 H 1.48501 * 109.47201 * 60.00323 * 3 2 1 7 7 C 1.37874 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00197 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00207 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47260 * 179.97438 * 9 7 2 11 11 C 1.38263 * 120.12315 * 264.99723 * 10 9 7 12 12 C 1.37936 * 120.36265 * 179.83433 * 11 10 9 13 13 C 1.39300 * 120.27086 * 0.02562 * 12 11 10 14 14 C 1.38863 * 118.88515 * 0.33012 * 13 12 11 15 15 C 1.37858 * 120.77200 * 359.47232 * 14 13 12 16 16 Cl 1.73599 * 120.02176 * 180.34688 * 15 14 13 17 17 C 1.51638 * 107.04762 * 179.47265 * 14 13 12 18 18 C 1.54706 * 101.95770 * 344.59472 * 17 14 13 19 19 O 1.36132 * 129.87823 * 180.98701 * 13 12 11 20 20 H 0.97003 * 119.99890 * 359.97438 * 1 2 3 21 21 H 1.08993 * 109.47129 * 59.99118 * 9 7 2 22 22 H 1.09007 * 109.46770 * 299.99299 * 9 7 2 23 23 H 1.08000 * 119.82038 * 359.85766 * 11 10 9 24 24 H 1.08001 * 119.86803 * 180.02562 * 12 11 10 25 25 H 1.09002 * 110.93994 * 102.77347 * 17 14 13 26 26 H 1.08997 * 110.93769 * 226.42527 * 17 14 13 27 27 H 1.09003 * 110.75074 * 143.61902 * 18 17 14 28 28 H 1.08994 * 110.75591 * 266.97977 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0005 11 6 2.6019 -4.2398 -1.1908 12 6 3.5004 -5.2863 -1.1969 13 6 4.0418 -5.7539 -0.0016 14 6 3.6559 -5.1538 1.1897 15 6 2.7608 -4.1053 1.1937 16 17 2.2987 -3.3635 2.6937 17 6 4.3880 -5.8718 2.3068 18 6 4.8782 -7.1553 1.5956 19 8 4.9455 -6.7482 0.2173 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5570 -0.8895 22 1 0.6240 -2.5567 0.8904 23 1 2.1866 -3.8831 -2.1218 24 1 3.7854 -5.7451 -2.1321 25 1 5.2298 -5.2791 2.6649 26 1 3.7092 -6.1146 3.1243 27 1 5.8627 -7.4473 1.9611 28 1 4.1611 -7.9661 1.7244 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259522580.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:52 Heat of formation + Delta-G solvation = -25.011444 kcal Electronic energy + Delta-G solvation = -14370.017223 eV Core-core repulsion = 11797.773090 eV Total energy + Delta-G solvation = -2572.244133 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.75947 -37.50888 -35.60868 -33.22898 -32.31077 -30.75166 -28.81375 -26.86216 -23.59502 -22.84772 -21.50985 -20.30146 -17.17365 -16.53222 -16.33261 -15.94779 -14.87029 -14.16857 -14.14320 -13.32506 -13.10703 -13.02096 -12.59763 -12.15034 -11.69684 -11.57725 -11.32985 -11.18202 -10.87618 -10.64490 -10.44582 -10.29593 -10.12251 -9.56335 -9.32379 -8.39532 -8.24129 -7.48617 -6.01642 -4.04371 1.61059 1.81311 2.84006 3.31130 3.38852 3.43904 3.46967 4.08317 4.47937 4.61511 4.74315 5.03934 5.29556 5.33654 5.42469 5.56168 5.76150 5.84345 5.89973 6.00357 6.22614 6.56421 6.77997 6.88394 6.99102 7.46356 7.56578 7.71949 7.93404 8.31416 8.99038 9.58696 11.08353 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.034930 B = 0.007446 C = 0.006881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.407527 B = 3759.466629 C = 4068.328352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.502 4.502 8 H 0.056 0.944 9 C 0.050 3.950 10 C -0.051 4.051 11 C -0.083 4.083 12 C -0.132 4.132 13 C 0.082 3.918 14 C -0.173 4.173 15 C 0.011 3.989 16 Cl -0.063 7.063 17 C -0.105 4.105 18 C 0.054 3.946 19 O -0.308 6.308 20 H 0.261 0.739 21 H 0.031 0.969 22 H 0.040 0.960 23 H 0.137 0.863 24 H 0.124 0.876 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.102 0.898 28 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.804 -11.900 2.860 14.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.541 4.541 8 H 0.074 0.926 9 C 0.013 3.987 10 C -0.052 4.052 11 C -0.101 4.101 12 C -0.151 4.151 13 C 0.037 3.963 14 C -0.174 4.174 15 C -0.015 4.015 16 Cl -0.034 7.034 17 C -0.142 4.142 18 C -0.021 4.021 19 O -0.223 6.223 20 H 0.070 0.930 21 H 0.049 0.951 22 H 0.058 0.942 23 H 0.155 0.845 24 H 0.142 0.858 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.120 0.880 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.770 -11.826 2.856 13.923 hybrid contribution 0.406 1.067 0.334 1.190 sum 7.176 -10.759 3.189 13.320 Atomic orbital electron populations 1.69960 1.05962 1.26608 1.50742 1.24943 0.94820 0.99054 0.95253 0.86528 0.80223 0.83713 0.77573 1.19682 1.21005 1.20989 1.20973 0.92892 0.89557 1.50645 0.92570 1.18386 0.92319 0.88936 0.99065 1.20588 0.97985 0.96747 0.89863 1.20816 0.96662 0.94361 0.98307 1.20269 0.99599 0.99904 0.95353 1.19207 0.92252 0.90668 0.94171 1.20370 1.02022 0.99625 0.95419 1.19983 0.98447 0.94885 0.88217 1.98336 1.91279 1.82055 1.31692 1.21715 1.00048 0.95207 0.97188 1.23764 1.02428 0.96605 0.79339 1.86796 1.54667 1.51614 1.29247 0.92960 0.95092 0.94156 0.84499 0.85758 0.89310 0.89235 0.88022 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.29 55.43 0.74 -25.40 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 15 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 7 C -0.50 -13.84 9.09 -34.44 -0.31 -14.15 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 15 9 C 0.05 1.25 4.63 -29.04 -0.13 1.12 15 10 C -0.05 -1.10 5.08 -104.53 -0.53 -1.63 15 11 C -0.08 -1.56 9.66 -39.68 -0.38 -1.94 15 12 C -0.13 -2.23 10.06 -39.30 -0.40 -2.63 15 13 C 0.08 1.40 7.04 -38.96 -0.27 1.13 15 14 C -0.17 -3.02 6.13 -104.07 -0.64 -3.66 15 15 C 0.01 0.23 6.30 -39.63 -0.25 -0.02 15 16 Cl -0.06 -1.25 27.27 -51.86 -1.41 -2.66 15 17 C -0.10 -1.38 6.93 -26.52 -0.18 -1.56 15 18 C 0.05 0.61 8.02 38.06 0.31 0.92 15 19 O -0.31 -4.75 11.11 -20.16 -0.22 -4.97 15 20 H 0.26 7.21 8.31 -40.82 -0.34 6.88 15 21 H 0.03 0.81 8.05 -51.93 -0.42 0.39 15 22 H 0.04 1.08 7.14 -51.93 -0.37 0.71 15 23 H 0.14 2.36 8.06 -52.49 -0.42 1.94 15 24 H 0.12 1.75 8.06 -52.49 -0.42 1.33 15 25 H 0.09 1.10 8.14 -51.93 -0.42 0.68 15 26 H 0.09 1.06 8.14 -51.93 -0.42 0.63 15 27 H 0.10 0.86 8.14 -51.93 -0.42 0.44 15 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 15 LS Contribution 260.85 15.07 3.93 3.93 Total: -1.00 -30.08 260.85 -7.75 -37.83 By element: Atomic # 1 Polarization: -1.61 SS G_CDS: -2.87 Total: -4.48 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -2.90 Total: -20.83 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: 0.74 Total: -25.40 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.22 Total: -4.97 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.41 Total: -2.66 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.08 -7.75 -37.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259522580.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.822 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds