Wall clock time and date at job start Mon Mar 30 2020 05:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00109 * 2 1 4 4 H 1.48501 * 109.47415 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47059 * 300.00277 * 3 2 1 6 6 H 1.48501 * 109.47201 * 60.00323 * 3 2 1 7 7 C 1.37874 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00197 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00207 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47260 * 179.97438 * 9 7 2 11 11 C 1.38263 * 120.12315 * 264.99723 * 10 9 7 12 12 C 1.37936 * 120.36265 * 179.83433 * 11 10 9 13 13 C 1.39300 * 120.27086 * 0.02562 * 12 11 10 14 14 C 1.38863 * 118.88515 * 0.33012 * 13 12 11 15 15 C 1.37858 * 120.77200 * 359.47232 * 14 13 12 16 16 Cl 1.73599 * 120.02176 * 180.34688 * 15 14 13 17 17 C 1.51638 * 107.04762 * 179.47265 * 14 13 12 18 18 C 1.54706 * 101.95770 * 344.59472 * 17 14 13 19 19 O 1.36132 * 129.87823 * 180.98701 * 13 12 11 20 20 H 0.97003 * 119.99890 * 359.97438 * 1 2 3 21 21 H 1.08993 * 109.47129 * 59.99118 * 9 7 2 22 22 H 1.09007 * 109.46770 * 299.99299 * 9 7 2 23 23 H 1.08000 * 119.82038 * 359.85766 * 11 10 9 24 24 H 1.08001 * 119.86803 * 180.02562 * 12 11 10 25 25 H 1.09002 * 110.93994 * 102.77347 * 17 14 13 26 26 H 1.08997 * 110.93769 * 226.42527 * 17 14 13 27 27 H 1.09003 * 110.75074 * 143.61902 * 18 17 14 28 28 H 1.08994 * 110.75591 * 266.97977 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0005 11 6 2.6019 -4.2398 -1.1908 12 6 3.5004 -5.2863 -1.1969 13 6 4.0418 -5.7539 -0.0016 14 6 3.6559 -5.1538 1.1897 15 6 2.7608 -4.1053 1.1937 16 17 2.2987 -3.3635 2.6937 17 6 4.3880 -5.8718 2.3068 18 6 4.8782 -7.1553 1.5956 19 8 4.9455 -6.7482 0.2173 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5570 -0.8895 22 1 0.6240 -2.5567 0.8904 23 1 2.1866 -3.8831 -2.1218 24 1 3.7854 -5.7451 -2.1321 25 1 5.2298 -5.2791 2.6649 26 1 3.7092 -6.1146 3.1243 27 1 5.8627 -7.4473 1.9611 28 1 4.1611 -7.9661 1.7244 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259522580.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:52 Heat of formation + Delta-G solvation = -42.019122 kcal Electronic energy + Delta-G solvation = -14370.754731 eV Core-core repulsion = 11797.773090 eV Total energy + Delta-G solvation = -2572.981641 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.00254 -38.92742 -37.12441 -35.22309 -33.54378 -32.48215 -30.04923 -28.65936 -25.32930 -24.16227 -22.81622 -21.83991 -18.50540 -18.39727 -17.79978 -17.07759 -16.70587 -15.79644 -15.51272 -14.71177 -14.68885 -14.25130 -14.02080 -13.76940 -13.33112 -13.22585 -12.73241 -12.63864 -12.51556 -12.44424 -11.97312 -11.87525 -11.76194 -11.35790 -11.18758 -10.55077 -9.64217 -8.96047 -8.14541 -6.25608 0.20410 0.35943 1.33149 1.39505 1.41016 1.53188 2.31172 2.41444 2.69024 3.16612 3.49387 3.67469 4.04906 4.17099 4.22310 4.41386 4.48091 4.55215 4.81430 4.88140 4.96555 5.15008 5.21588 5.34791 5.40504 5.56885 5.78518 5.84455 6.15993 6.23630 6.84337 7.41201 8.94361 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.034930 B = 0.007446 C = 0.006881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.407527 B = 3759.466629 C = 4068.328352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.280 1.280 7 C -0.510 4.510 8 H 0.048 0.952 9 C 0.061 3.939 10 C -0.086 4.086 11 C -0.087 4.087 12 C -0.127 4.127 13 C 0.087 3.913 14 C -0.179 4.179 15 C -0.004 4.004 16 Cl -0.072 7.072 17 C -0.105 4.105 18 C 0.053 3.947 19 O -0.314 6.314 20 H 0.264 0.736 21 H 0.010 0.990 22 H 0.016 0.984 23 H 0.144 0.856 24 H 0.156 0.844 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.138 0.862 28 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.837 -13.171 2.992 16.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.188 4.188 3 Si 0.780 3.220 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.206 1.206 7 C -0.548 4.548 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.087 4.087 11 C -0.105 4.105 12 C -0.146 4.146 13 C 0.042 3.958 14 C -0.181 4.181 15 C -0.030 4.030 16 Cl -0.043 7.043 17 C -0.142 4.142 18 C -0.020 4.020 19 O -0.229 6.229 20 H 0.072 0.928 21 H 0.028 0.972 22 H 0.034 0.966 23 H 0.162 0.838 24 H 0.173 0.827 25 H 0.116 0.884 26 H 0.121 0.879 27 H 0.156 0.844 28 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.814 -13.114 2.992 16.082 hybrid contribution -0.175 1.328 0.312 1.376 sum 8.640 -11.786 3.305 14.982 Atomic orbital electron populations 1.70070 1.07413 1.27577 1.51787 1.25750 0.95617 1.02502 0.94947 0.85541 0.79036 0.79567 0.77818 1.19181 1.20149 1.20554 1.21204 0.92602 0.90913 1.50089 0.93333 1.18065 0.92585 0.90161 0.96753 1.20336 0.99246 0.97244 0.91903 1.20896 0.97147 0.94846 0.97591 1.20508 0.98395 0.98840 0.96854 1.19422 0.91701 0.90697 0.94027 1.20762 1.01047 0.98574 0.97687 1.20070 0.99550 0.96015 0.87401 1.98321 1.91501 1.82423 1.32045 1.21881 1.00119 0.95688 0.96486 1.24135 1.05126 0.95919 0.76868 1.86800 1.53728 1.50709 1.31637 0.92754 0.97210 0.96599 0.83790 0.82652 0.88394 0.87875 0.84415 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.55 13.29 21.45 0.28 -55.26 15 2 C 0.01 0.56 5.46 84.65 0.46 1.02 15 3 Si 0.96 44.62 29.54 68.60 2.03 46.65 15 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 6 H -0.28 -12.81 7.11 99.48 0.71 -12.11 15 7 C -0.51 -28.78 9.09 25.60 0.23 -28.55 15 8 H 0.05 2.75 7.74 -2.91 -0.02 2.73 15 9 C 0.06 3.23 4.63 29.10 0.13 3.36 15 10 C -0.09 -3.80 5.08 -19.80 -0.10 -3.90 15 11 C -0.09 -3.23 9.66 22.20 0.21 -3.01 15 12 C -0.13 -4.04 10.06 22.45 0.23 -3.81 15 13 C 0.09 2.76 7.04 22.68 0.16 2.92 15 14 C -0.18 -5.96 6.13 -19.51 -0.12 -6.08 15 15 C 0.00 -0.15 6.30 22.24 0.14 -0.01 15 16 Cl -0.07 -2.89 27.27 -2.72 -0.07 -2.97 15 17 C -0.10 -2.44 6.93 30.73 0.21 -2.23 15 18 C 0.05 0.99 8.02 72.56 0.58 1.57 15 19 O -0.31 -8.49 11.11 -95.05 -1.06 -9.54 15 20 H 0.26 14.84 8.31 -92.71 -0.77 14.07 15 21 H 0.01 0.53 8.05 -2.39 -0.02 0.51 15 22 H 0.02 0.89 7.14 -2.38 -0.02 0.87 15 23 H 0.14 4.99 8.06 -2.91 -0.02 4.96 15 24 H 0.16 3.89 8.06 -2.91 -0.02 3.86 15 25 H 0.10 2.13 8.14 -2.39 -0.02 2.11 15 26 H 0.10 2.13 8.14 -2.39 -0.02 2.11 15 27 H 0.14 1.60 8.14 -2.39 -0.02 1.58 15 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 15 Total: -1.00 -65.46 260.85 4.49 -60.97 By element: Atomic # 1 Polarization: -2.30 SS G_CDS: 1.17 Total: -1.13 kcal Atomic # 6 Polarization: -40.86 SS G_CDS: 2.14 Total: -38.71 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.28 Total: -55.26 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -1.06 Total: -9.54 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 17 Polarization: -2.89 SS G_CDS: -0.07 Total: -2.97 kcal Total: -65.46 4.49 -60.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259522580.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.950 kcal (2) G-P(sol) polarization free energy of solvation -65.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds