Wall clock time and date at job start Mon Mar 30 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48503 * 109.47276 * 239.99768 * 3 2 1 5 5 H 1.48496 * 109.47302 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00098 * 3 2 1 7 7 C 1.37885 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.47238 * 179.97438 * 11 10 9 13 13 O 1.20761 * 119.99727 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99938 * 180.02562 * 12 11 10 15 15 C 1.50707 * 109.47022 * 180.02562 * 14 12 11 16 16 C 1.33391 * 125.20014 * 89.99541 * 15 14 12 17 17 C 1.38424 * 114.91448 * 179.97438 * 16 15 14 18 18 C 1.33390 * 114.92710 * 359.97438 * 17 16 15 19 19 S 1.75880 * 125.20344 * 269.69507 * 15 14 12 20 20 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 21 21 H 1.08992 * 109.46894 * 60.00093 * 9 7 2 22 22 H 1.08996 * 109.46805 * 300.00243 * 9 7 2 23 23 H 1.09001 * 109.47372 * 60.00128 * 10 9 7 24 24 H 1.09004 * 109.47108 * 299.99872 * 10 9 7 25 25 H 1.09001 * 109.46832 * 59.99979 * 11 10 9 26 26 H 1.09000 * 109.47611 * 300.00276 * 11 10 9 27 27 H 1.09003 * 109.47151 * 299.99718 * 14 12 11 28 28 H 1.08995 * 109.47561 * 60.00253 * 14 12 11 29 29 H 1.07998 * 122.54340 * 359.96083 * 16 15 14 30 30 H 1.08004 * 122.53606 * 180.02562 * 17 16 15 31 31 H 1.07991 * 125.20652 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4800 -4.9871 0.0001 12 6 2.4592 -6.1327 -0.0005 13 8 3.6465 -5.9121 -0.0009 14 6 1.9567 -7.5534 -0.0006 15 6 3.1288 -8.5008 -0.0007 16 6 3.7268 -8.9841 1.0893 17 6 4.7857 -9.8407 0.8421 18 6 5.0473 -10.0534 -0.4485 19 16 3.9126 -9.1439 -1.4378 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 -0.8902 22 1 0.6246 -2.5570 0.8896 23 1 2.8717 -3.6045 0.8895 24 1 2.8717 -3.6044 -0.8906 25 1 0.8530 -5.0450 -0.8897 26 1 0.8535 -5.0446 0.8903 27 1 1.3515 -7.7248 0.8896 28 1 1.3509 -7.7245 -0.8904 29 1 3.4091 -8.7265 2.0888 30 1 5.3564 -10.3025 1.6343 31 1 5.8331 -10.6897 -0.8278 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259602014.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:00 Heat of formation + Delta-G solvation = -26.555645 kcal Electronic energy + Delta-G solvation = -13753.064927 eV Core-core repulsion = 11318.630633 eV Total energy + Delta-G solvation = -2434.434293 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.48137 -37.65118 -34.22506 -32.44320 -31.93388 -28.52736 -26.83817 -24.12620 -22.97284 -20.40265 -19.43954 -19.15256 -17.19499 -16.33189 -15.71958 -15.58969 -15.27559 -14.41059 -14.20434 -13.73578 -13.00167 -12.82414 -12.63926 -12.39371 -12.19763 -11.77218 -11.62193 -11.33732 -10.83520 -10.78778 -10.61881 -10.56442 -9.70486 -9.68661 -9.27301 -9.04998 -8.60161 -8.52776 -8.32257 -5.97961 -3.99636 0.91049 1.55685 1.91932 2.23193 2.66710 3.36211 3.39722 3.43406 4.27440 4.49837 4.57469 4.94924 5.04747 5.32751 5.37963 5.40517 5.48258 5.61614 5.71763 5.81769 6.01504 6.18886 6.33505 6.39958 6.69237 6.89628 7.12787 7.69514 7.80011 7.82794 8.02420 8.46266 9.07220 9.64334 11.13449 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.058543 B = 0.003846 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.162818 B = 7278.551359 C = 7416.293181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.102 4.102 11 C -0.167 4.167 12 C 0.352 3.648 13 O -0.441 6.441 14 C -0.106 4.106 15 C -0.158 4.158 16 C -0.137 4.137 17 C -0.132 4.132 18 C -0.219 4.219 19 S 0.101 5.899 20 H 0.261 0.739 21 H 0.016 0.984 22 H 0.016 0.984 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.115 0.885 28 H 0.107 0.893 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.089 -20.756 -0.121 21.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.140 4.140 11 C -0.205 4.205 12 C 0.225 3.775 13 O -0.313 6.313 14 C -0.146 4.146 15 C -0.275 4.275 16 C -0.167 4.167 17 C -0.162 4.162 18 C -0.355 4.355 19 S 0.364 5.636 20 H 0.070 0.930 21 H 0.034 0.966 22 H 0.034 0.966 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.133 0.867 28 H 0.125 0.875 29 H 0.156 0.844 30 H 0.156 0.844 31 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.376 -20.363 -1.684 20.896 hybrid contribution 0.599 0.703 1.531 1.788 sum 4.975 -19.660 -0.153 20.281 Atomic orbital electron populations 1.69952 1.06041 1.26670 1.51054 1.25020 0.94857 0.99241 0.95345 0.86653 0.79584 0.83065 0.78687 1.20219 1.21297 1.20232 1.21244 0.93122 0.91091 1.50383 0.92695 1.19118 0.93942 0.91428 0.97149 1.21493 0.98785 0.92302 1.01385 1.22222 0.99044 0.95106 1.04100 1.24797 0.90572 0.91045 0.71043 1.90398 1.19232 1.87194 1.34442 1.20826 0.95346 0.92647 1.05765 1.24089 1.03125 1.04311 0.95987 1.20080 0.97503 0.99849 0.99255 1.20128 0.99015 1.00694 0.96390 1.25559 1.05602 1.07394 0.96903 1.84224 1.27160 1.42433 1.09739 0.92990 0.96578 0.96591 0.92906 0.92900 0.88845 0.88799 0.86667 0.87505 0.84440 0.84431 0.82077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 10 C -0.10 -2.18 4.44 -26.73 -0.12 -2.29 16 11 C -0.17 -2.65 5.64 -27.88 -0.16 -2.81 16 12 C 0.35 5.23 7.15 -29.03 -0.21 5.03 16 13 O -0.44 -8.25 15.66 6.00 0.09 -8.15 16 14 C -0.11 -1.16 6.13 -29.03 -0.18 -1.34 16 15 C -0.16 -1.92 5.00 -36.00 -0.18 -2.10 16 16 C -0.14 -1.59 10.05 -41.21 -0.41 -2.00 16 17 C -0.13 -1.39 10.18 -41.21 -0.42 -1.81 16 18 C -0.22 -2.27 11.23 29.04 0.33 -1.94 16 19 S 0.10 1.16 23.33 -107.50 -2.51 -1.34 16 20 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 21 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.05 1.17 8.10 -51.93 -0.42 0.74 16 24 H 0.05 1.17 8.10 -51.93 -0.42 0.75 16 25 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 31 H 0.16 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 287.77 15.07 4.34 4.34 Total: -1.00 -32.89 287.77 -8.45 -41.34 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: -4.19 Total: -4.06 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -1.90 Total: -22.75 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.74 Total: -26.41 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.09 Total: -8.15 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.51 Total: -1.34 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.89 -8.45 -41.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259602014.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.781 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds