Wall clock time and date at job start Mon Mar 30 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48503 * 109.47276 * 239.99768 * 3 2 1 5 5 H 1.48496 * 109.47302 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00098 * 3 2 1 7 7 C 1.37885 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.47238 * 179.97438 * 11 10 9 13 13 O 1.20761 * 119.99727 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99938 * 180.02562 * 12 11 10 15 15 C 1.50707 * 109.47022 * 180.02562 * 14 12 11 16 16 C 1.33391 * 125.20014 * 89.99541 * 15 14 12 17 17 C 1.38424 * 114.91448 * 179.97438 * 16 15 14 18 18 C 1.33390 * 114.92710 * 359.97438 * 17 16 15 19 19 S 1.75880 * 125.20344 * 269.69507 * 15 14 12 20 20 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 21 21 H 1.08992 * 109.46894 * 60.00093 * 9 7 2 22 22 H 1.08996 * 109.46805 * 300.00243 * 9 7 2 23 23 H 1.09001 * 109.47372 * 60.00128 * 10 9 7 24 24 H 1.09004 * 109.47108 * 299.99872 * 10 9 7 25 25 H 1.09001 * 109.46832 * 59.99979 * 11 10 9 26 26 H 1.09000 * 109.47611 * 300.00276 * 11 10 9 27 27 H 1.09003 * 109.47151 * 299.99718 * 14 12 11 28 28 H 1.08995 * 109.47561 * 60.00253 * 14 12 11 29 29 H 1.07998 * 122.54340 * 359.96083 * 16 15 14 30 30 H 1.08004 * 122.53606 * 180.02562 * 17 16 15 31 31 H 1.07991 * 125.20652 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4800 -4.9871 0.0001 12 6 2.4592 -6.1327 -0.0005 13 8 3.6465 -5.9121 -0.0009 14 6 1.9567 -7.5534 -0.0006 15 6 3.1288 -8.5008 -0.0007 16 6 3.7268 -8.9841 1.0893 17 6 4.7857 -9.8407 0.8421 18 6 5.0473 -10.0534 -0.4485 19 16 3.9126 -9.1439 -1.4378 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 -0.8902 22 1 0.6246 -2.5570 0.8896 23 1 2.8717 -3.6045 0.8895 24 1 2.8717 -3.6044 -0.8906 25 1 0.8530 -5.0450 -0.8897 26 1 0.8535 -5.0446 0.8903 27 1 1.3515 -7.7248 0.8896 28 1 1.3509 -7.7245 -0.8904 29 1 3.4091 -8.7265 2.0888 30 1 5.3564 -10.3025 1.6343 31 1 5.8331 -10.6897 -0.8278 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259602014.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:00 Heat of formation + Delta-G solvation = -45.224046 kcal Electronic energy + Delta-G solvation = -13753.874449 eV Core-core repulsion = 11318.630633 eV Total energy + Delta-G solvation = -2435.243816 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.68074 -38.51677 -36.13586 -34.05895 -33.22045 -30.09508 -28.06340 -25.77218 -24.09517 -22.14383 -20.59941 -20.08311 -18.48775 -18.04940 -16.94626 -16.76512 -16.38717 -16.36172 -15.43802 -15.10945 -14.29778 -13.96037 -13.87122 -13.61413 -13.51424 -13.19028 -13.07166 -12.59635 -12.50648 -12.41678 -12.38405 -11.66761 -11.54148 -11.49562 -11.28674 -10.55560 -10.55094 -9.52548 -9.37933 -8.21113 -6.31492 0.07721 0.73895 1.06960 1.11062 1.38747 1.41461 1.49694 1.84678 2.40390 3.11646 3.18527 3.70403 4.15786 4.21953 4.25555 4.33651 4.48849 4.60177 4.72302 4.77416 4.98009 4.99666 5.14796 5.19234 5.21203 5.38752 5.52250 5.60090 5.74795 5.86076 6.26783 6.64358 6.84188 7.37244 8.90074 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.058543 B = 0.003846 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.162818 B = 7278.551359 C = 7416.293181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.551 4.551 8 H 0.050 0.950 9 C 0.025 3.975 10 C -0.091 4.091 11 C -0.164 4.164 12 C 0.361 3.639 13 O -0.486 6.486 14 C -0.097 4.097 15 C -0.178 4.178 16 C -0.145 4.145 17 C -0.143 4.143 18 C -0.217 4.217 19 S 0.075 5.925 20 H 0.265 0.735 21 H 0.000 1.000 22 H 0.001 0.999 23 H 0.039 0.961 24 H 0.037 0.963 25 H 0.113 0.887 26 H 0.116 0.884 27 H 0.147 0.853 28 H 0.131 0.869 29 H 0.150 0.850 30 H 0.160 0.840 31 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.261 -21.576 0.222 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.589 4.589 8 H 0.068 0.932 9 C -0.012 4.012 10 C -0.129 4.129 11 C -0.201 4.201 12 C 0.237 3.763 13 O -0.361 6.361 14 C -0.136 4.136 15 C -0.296 4.296 16 C -0.175 4.175 17 C -0.174 4.174 18 C -0.352 4.352 19 S 0.338 5.662 20 H 0.074 0.926 21 H 0.019 0.981 22 H 0.019 0.981 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.131 0.869 26 H 0.134 0.866 27 H 0.165 0.835 28 H 0.149 0.851 29 H 0.167 0.833 30 H 0.178 0.822 31 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 4.537 -21.201 -1.342 21.722 hybrid contribution 0.545 0.936 1.437 1.800 sum 5.082 -20.264 0.096 20.892 Atomic orbital electron populations 1.70059 1.07504 1.27883 1.51457 1.25908 0.95827 1.03065 0.94640 0.85565 0.78415 0.78421 0.79054 1.19457 1.20289 1.19418 1.21689 0.93300 0.92953 1.50936 0.93165 1.19022 0.94248 0.92441 0.95505 1.21237 0.97780 0.93916 0.99963 1.22167 0.99140 0.92636 1.06149 1.25043 0.89421 0.92623 0.69168 1.90397 1.20898 1.87985 1.36861 1.20821 0.95384 0.89027 1.08365 1.24298 1.03965 1.05180 0.96113 1.20412 0.97596 0.99722 0.99785 1.20448 0.99073 1.00679 0.97155 1.25902 1.05556 1.07087 0.96671 1.84271 1.28148 1.43168 1.10588 0.92621 0.98139 0.98052 0.94250 0.94398 0.86931 0.86638 0.83546 0.85123 0.83283 0.82215 0.79784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 2 C 0.00 0.22 5.46 84.66 0.46 0.68 16 3 Si 0.96 45.21 29.54 68.60 2.03 47.23 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.55 -32.51 9.11 25.60 0.23 -32.28 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 9 C 0.02 1.32 4.97 29.85 0.15 1.46 16 10 C -0.09 -3.94 4.44 30.59 0.14 -3.81 16 11 C -0.16 -4.97 5.64 29.85 0.17 -4.81 16 12 C 0.36 10.23 7.15 29.10 0.21 10.44 16 13 O -0.49 -18.10 15.66 -1.45 -0.02 -18.13 16 14 C -0.10 -1.87 6.13 29.10 0.18 -1.69 16 15 C -0.18 -4.03 5.00 24.59 0.12 -3.91 16 16 C -0.14 -3.10 10.05 21.22 0.21 -2.89 16 17 C -0.14 -2.75 10.18 21.22 0.22 -2.54 16 18 C -0.22 -4.12 11.23 66.72 0.75 -3.37 16 19 S 0.07 1.65 23.33 -56.49 -1.32 0.33 16 20 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 21 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 22 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 23 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 24 H 0.04 1.71 8.10 -2.38 -0.02 1.69 16 25 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 26 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 27 H 0.15 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.13 1.91 8.14 -2.39 -0.02 1.90 16 29 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 30 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 31 H 0.18 2.46 8.06 -2.92 -0.02 2.44 16 Total: -1.00 -71.52 287.77 4.91 -66.62 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: 1.10 Total: 2.86 kcal Atomic # 6 Polarization: -45.53 SS G_CDS: 2.84 Total: -42.70 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.28 Total: -56.22 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.02 Total: -18.13 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -1.32 Total: 0.33 kcal Total: -71.52 4.91 -66.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259602014.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.391 kcal (2) G-P(sol) polarization free energy of solvation -71.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds