Wall clock time and date at job start Mon Mar 30 2020 05:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99792 * 2 1 4 4 H 1.48496 * 109.46552 * 239.99665 * 3 2 1 5 5 H 1.48501 * 109.47030 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47404 * 119.99756 * 3 2 1 7 7 C 1.37878 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99842 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00411 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47388 * 179.97438 * 9 7 2 11 11 C 1.38521 * 120.80197 * 100.00139 * 10 9 7 12 12 N 1.32364 * 119.11878 * 180.02562 * 11 10 9 13 13 C 1.31804 * 120.85581 * 359.97438 * 12 11 10 14 14 C 1.50692 * 119.12010 * 179.97438 * 13 12 11 15 15 C 1.53000 * 117.50104 * 240.00379 * 14 13 12 16 16 C 1.53002 * 60.02940 * 252.47218 * 15 14 13 17 17 N 1.31783 * 121.76682 * 0.26147 * 13 12 11 18 18 C 1.32465 * 120.79385 * 359.47585 * 17 13 12 19 19 Cl 1.73598 * 120.46545 * 180.23364 * 18 17 13 20 20 H 0.96991 * 120.00385 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46559 * 60.00037 * 9 7 2 22 22 H 1.08994 * 109.47301 * 300.00240 * 9 7 2 23 23 H 1.07997 * 120.44209 * 0.04341 * 11 10 9 24 24 H 1.09008 * 115.54779 * 25.66993 * 14 13 12 25 25 H 1.09002 * 117.49833 * 359.97323 * 15 14 13 26 26 H 1.09002 * 117.49953 * 144.97364 * 15 14 13 27 27 H 1.09000 * 117.49996 * 107.50493 * 16 15 14 28 28 H 1.08999 * 117.49664 * 252.51862 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.5343 -4.3181 1.1723 12 7 3.3996 -5.3190 1.1341 13 6 3.9690 -5.6774 0.0007 14 6 4.9490 -6.8222 0.0023 15 6 6.3774 -6.5301 -0.4616 16 6 5.4345 -7.3399 -1.3539 17 7 3.7086 -5.0580 -1.1329 18 6 2.8493 -4.0506 -1.1734 19 17 2.5080 -3.2445 -2.6725 20 1 -0.4850 0.8399 -0.0004 21 1 0.6249 -2.5571 -0.8897 22 1 0.6241 -2.5568 0.8902 23 1 2.0712 -4.0305 2.1045 24 1 4.8187 -7.5514 0.8020 25 1 6.6082 -5.5099 -0.7683 26 1 7.1869 -7.0668 0.0331 27 1 5.0451 -6.8525 -2.2477 28 1 5.6236 -8.4094 -1.4459 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259672943.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:58 Heat of formation + Delta-G solvation = 54.172357 kcal Electronic energy + Delta-G solvation = -14154.466098 eV Core-core repulsion = 11617.948383 eV Total energy + Delta-G solvation = -2536.517714 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.71152 -37.08370 -36.12857 -33.87929 -33.07348 -31.75713 -27.79246 -24.72607 -24.06124 -22.30515 -22.15239 -20.67930 -17.56858 -16.84103 -16.45408 -15.20572 -14.78860 -14.56801 -14.13336 -13.43713 -13.41139 -12.39641 -12.09466 -11.83418 -11.62686 -11.47381 -11.26779 -10.86363 -10.71330 -10.60399 -10.46145 -10.38064 -9.90510 -9.69678 -9.59265 -8.91707 -8.49761 -8.30181 -6.14138 -4.18552 1.31781 1.40316 2.26234 3.27408 3.31787 3.35018 3.70221 4.06437 4.26469 4.38715 4.61086 4.93516 5.09184 5.16210 5.18877 5.23807 5.54256 5.65516 5.79109 6.02026 6.11343 6.17690 6.27574 6.72324 7.31080 7.33256 7.41670 7.78933 8.12756 8.40881 8.83073 9.45681 10.95875 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.034028 B = 0.006864 C = 0.006595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.663932 B = 4078.236608 C = 4244.368775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.056 3.944 10 C -0.122 4.122 11 C 0.147 3.853 12 N -0.514 5.514 13 C 0.327 3.673 14 C -0.091 4.091 15 C -0.159 4.159 16 C -0.157 4.157 17 N -0.516 5.516 18 C 0.213 3.787 19 Cl -0.008 7.008 20 H 0.264 0.736 21 H 0.045 0.955 22 H 0.037 0.963 23 H 0.175 0.825 24 H 0.127 0.873 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.109 0.891 28 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.032 -10.617 -1.215 12.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.018 3.982 10 C -0.127 4.127 11 C -0.019 4.019 12 N -0.228 5.228 13 C 0.060 3.940 14 C -0.111 4.111 15 C -0.198 4.198 16 C -0.195 4.195 17 N -0.233 5.233 18 C 0.040 3.960 19 Cl 0.021 6.979 20 H 0.074 0.926 21 H 0.063 0.937 22 H 0.056 0.944 23 H 0.192 0.808 24 H 0.145 0.855 25 H 0.114 0.886 26 H 0.118 0.882 27 H 0.127 0.873 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.468 -11.156 -1.347 13.492 hybrid contribution -0.219 1.823 -0.119 1.840 sum 7.249 -9.334 -1.466 11.908 Atomic orbital electron populations 1.69922 1.05966 1.27172 1.49756 1.24921 0.94854 0.99111 0.94829 0.86604 0.79610 0.82754 0.78845 1.20046 1.21105 1.20122 1.20810 0.92716 0.89335 1.52089 0.92745 1.18342 0.91929 0.88302 0.99604 1.22295 0.99586 0.98886 0.91932 1.23209 0.91564 0.88845 0.98262 1.67994 1.09529 1.15851 1.29385 1.21727 0.94668 0.94535 0.83093 1.20514 0.93541 0.96682 1.00363 1.22969 0.91520 1.02024 1.03242 1.23013 1.02394 0.99729 0.94325 1.67322 1.16261 1.08717 1.30987 1.21913 0.93265 0.91601 0.89183 1.98405 1.92737 1.76187 1.30597 0.92590 0.93717 0.94438 0.80841 0.85549 0.88614 0.88204 0.87254 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.07 13.29 55.43 0.74 -24.33 15 2 C 0.07 1.76 5.46 -17.82 -0.10 1.67 15 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.95 15 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 15 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 7 C -0.51 -13.53 8.98 -34.44 -0.31 -13.84 15 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 15 9 C 0.06 1.35 4.63 -29.04 -0.13 1.21 15 10 C -0.12 -2.58 5.11 -104.32 -0.53 -3.11 15 11 C 0.15 2.78 10.97 -17.22 -0.19 2.59 15 12 N -0.51 -9.50 10.33 -10.74 -0.11 -9.61 15 13 C 0.33 5.83 7.31 -157.20 -1.15 4.68 15 14 C -0.09 -1.24 6.24 -91.74 -0.57 -1.82 15 15 C -0.16 -1.87 10.23 -26.73 -0.27 -2.15 15 16 C -0.16 -1.83 10.01 -26.69 -0.27 -2.10 15 17 N -0.52 -9.88 9.35 -7.85 -0.07 -9.96 15 18 C 0.21 4.38 7.33 -17.08 -0.13 4.26 15 19 Cl -0.01 -0.16 27.77 -51.86 -1.44 -1.60 15 20 H 0.26 7.09 8.31 -40.82 -0.34 6.75 15 21 H 0.04 1.14 7.46 -51.93 -0.39 0.75 15 22 H 0.04 0.92 8.04 -51.93 -0.42 0.50 15 23 H 0.17 2.86 8.06 -52.49 -0.42 2.44 15 24 H 0.13 1.52 8.14 -51.92 -0.42 1.10 15 25 H 0.10 1.27 8.14 -51.93 -0.42 0.84 15 26 H 0.10 0.92 8.14 -51.93 -0.42 0.50 15 27 H 0.11 1.45 7.55 -51.93 -0.39 1.06 15 28 H 0.10 0.88 8.14 -51.93 -0.42 0.46 15 LS Contribution 267.59 15.07 4.03 4.03 Total: -1.00 -28.50 267.59 -8.38 -36.88 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -2.85 Total: -2.77 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -3.65 Total: -8.60 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.55 Total: -43.90 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.44 Total: -1.60 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.50 -8.38 -36.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259672943.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.052 kcal (2) G-P(sol) polarization free energy of solvation -28.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds