Wall clock time and date at job start Mon Mar 30 2020 05:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99792 * 2 1 4 4 H 1.48496 * 109.46552 * 239.99665 * 3 2 1 5 5 H 1.48501 * 109.47030 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47404 * 119.99756 * 3 2 1 7 7 C 1.37878 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99842 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00411 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47388 * 179.97438 * 9 7 2 11 11 C 1.38521 * 120.80197 * 100.00139 * 10 9 7 12 12 N 1.32364 * 119.11878 * 180.02562 * 11 10 9 13 13 C 1.31804 * 120.85581 * 359.97438 * 12 11 10 14 14 C 1.50692 * 119.12010 * 179.97438 * 13 12 11 15 15 C 1.53000 * 117.50104 * 240.00379 * 14 13 12 16 16 C 1.53002 * 60.02940 * 252.47218 * 15 14 13 17 17 N 1.31783 * 121.76682 * 0.26147 * 13 12 11 18 18 C 1.32465 * 120.79385 * 359.47585 * 17 13 12 19 19 Cl 1.73598 * 120.46545 * 180.23364 * 18 17 13 20 20 H 0.96991 * 120.00385 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46559 * 60.00037 * 9 7 2 22 22 H 1.08994 * 109.47301 * 300.00240 * 9 7 2 23 23 H 1.07997 * 120.44209 * 0.04341 * 11 10 9 24 24 H 1.09008 * 115.54779 * 25.66993 * 14 13 12 25 25 H 1.09002 * 117.49833 * 359.97323 * 15 14 13 26 26 H 1.09002 * 117.49953 * 144.97364 * 15 14 13 27 27 H 1.09000 * 117.49996 * 107.50493 * 16 15 14 28 28 H 1.08999 * 117.49664 * 252.51862 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.5343 -4.3181 1.1723 12 7 3.3996 -5.3190 1.1341 13 6 3.9690 -5.6774 0.0007 14 6 4.9490 -6.8222 0.0023 15 6 6.3774 -6.5301 -0.4616 16 6 5.4345 -7.3399 -1.3539 17 7 3.7086 -5.0580 -1.1329 18 6 2.8493 -4.0506 -1.1734 19 17 2.5080 -3.2445 -2.6725 20 1 -0.4850 0.8399 -0.0004 21 1 0.6249 -2.5571 -0.8897 22 1 0.6241 -2.5568 0.8902 23 1 2.0712 -4.0305 2.1045 24 1 4.8187 -7.5514 0.8020 25 1 6.6082 -5.5099 -0.7683 26 1 7.1869 -7.0668 0.0331 27 1 5.0451 -6.8525 -2.2477 28 1 5.6236 -8.4094 -1.4459 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259672943.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:58 Heat of formation + Delta-G solvation = 38.765326 kcal Electronic energy + Delta-G solvation = -14155.134197 eV Core-core repulsion = 11617.948383 eV Total energy + Delta-G solvation = -2537.185813 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.057 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.18820 -38.25450 -37.62581 -35.72045 -34.57914 -33.56342 -29.54005 -26.40314 -25.59807 -23.80115 -23.21017 -22.05346 -19.04769 -18.55502 -18.14264 -16.72569 -16.36727 -16.00978 -15.38731 -15.13392 -14.83256 -14.32255 -13.57286 -13.42415 -13.23838 -12.99821 -12.67571 -12.47385 -12.32985 -12.15982 -11.95723 -11.49236 -11.47093 -11.33718 -11.30458 -10.62905 -10.36763 -9.89757 -8.20231 -6.30560 -0.23226 -0.10533 0.69010 1.41400 1.42296 1.50022 2.36664 2.48753 2.80117 3.01207 3.13204 3.26008 3.61430 3.92153 4.00936 4.10998 4.13832 4.42948 4.65410 4.80109 4.95628 5.16624 5.22658 5.33445 5.34896 5.48241 5.69572 5.79755 6.10976 6.76753 6.92259 7.36815 8.89575 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.034028 B = 0.006864 C = 0.006595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.663932 B = 4078.236608 C = 4244.368775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.952 3.048 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.518 4.518 8 H 0.047 0.953 9 C 0.069 3.931 10 C -0.149 4.149 11 C 0.156 3.844 12 N -0.517 5.517 13 C 0.328 3.672 14 C -0.113 4.113 15 C -0.147 4.147 16 C -0.144 4.144 17 N -0.522 5.522 18 C 0.206 3.794 19 Cl -0.011 7.011 20 H 0.266 0.734 21 H 0.024 0.976 22 H 0.027 0.973 23 H 0.195 0.805 24 H 0.148 0.852 25 H 0.076 0.924 26 H 0.133 0.867 27 H 0.090 0.910 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.740 -11.687 -0.768 14.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.181 4.181 3 Si 0.777 3.223 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.556 4.556 8 H 0.065 0.935 9 C 0.031 3.969 10 C -0.154 4.154 11 C -0.009 4.009 12 N -0.230 5.230 13 C 0.062 3.938 14 C -0.133 4.133 15 C -0.185 4.185 16 C -0.182 4.182 17 N -0.239 5.239 18 C 0.034 3.966 19 Cl 0.018 6.982 20 H 0.075 0.925 21 H 0.042 0.958 22 H 0.045 0.955 23 H 0.212 0.788 24 H 0.165 0.835 25 H 0.095 0.905 26 H 0.151 0.849 27 H 0.108 0.892 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.186 -12.237 -0.904 15.328 hybrid contribution -0.696 2.048 -0.262 2.179 sum 8.490 -10.189 -1.166 13.314 Atomic orbital electron populations 1.70021 1.07242 1.27973 1.50831 1.25655 0.95579 1.02234 0.94613 0.85700 0.78531 0.79137 0.78958 1.19832 1.20570 1.19395 1.21031 0.92457 0.90652 1.51449 0.93501 1.18023 0.92030 0.88865 0.98017 1.22048 1.00684 0.99455 0.93261 1.23525 0.90944 0.88195 0.98279 1.68153 1.09645 1.15651 1.29579 1.22704 0.94114 0.94601 0.82421 1.20800 0.93822 0.96107 1.02589 1.23066 0.91199 1.01557 1.02697 1.23094 1.01193 1.01481 0.92406 1.67462 1.16198 1.08586 1.31631 1.22013 0.93521 0.92035 0.89038 1.98395 1.92801 1.76346 1.30664 0.92491 0.95777 0.95488 0.78791 0.83484 0.90495 0.84914 0.89178 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.46 13.29 21.45 0.28 -52.18 15 2 C 0.02 1.01 5.46 84.65 0.46 1.47 15 3 Si 0.95 42.88 29.54 68.60 2.03 44.91 15 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 5 H -0.28 -12.32 7.11 99.48 0.71 -11.62 15 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 7 C -0.52 -27.66 8.98 25.60 0.23 -27.43 15 8 H 0.05 2.52 7.74 -2.91 -0.02 2.50 15 9 C 0.07 3.38 4.63 29.10 0.13 3.51 15 10 C -0.15 -6.36 5.11 -19.67 -0.10 -6.46 15 11 C 0.16 5.82 10.97 84.68 0.93 6.74 15 12 N -0.52 -18.34 10.33 -187.90 -1.94 -20.28 15 13 C 0.33 11.20 7.31 138.75 1.01 12.22 15 14 C -0.11 -2.78 6.24 -11.52 -0.07 -2.86 15 15 C -0.15 -3.00 10.23 30.60 0.31 -2.68 15 16 C -0.14 -2.92 10.01 30.62 0.31 -2.61 15 17 N -0.52 -19.64 9.35 -178.76 -1.67 -21.32 15 18 C 0.21 8.51 7.33 84.73 0.62 9.13 15 19 Cl -0.01 -0.43 27.77 -2.72 -0.08 -0.51 15 20 H 0.27 14.38 8.31 -92.72 -0.77 13.61 15 21 H 0.02 1.27 7.46 -2.39 -0.02 1.25 15 22 H 0.03 1.35 8.04 -2.39 -0.02 1.33 15 23 H 0.20 6.21 8.06 -2.91 -0.02 6.18 15 24 H 0.15 3.01 8.14 -2.38 -0.02 2.99 15 25 H 0.08 1.89 8.14 -2.39 -0.02 1.87 15 26 H 0.13 1.86 8.14 -2.39 -0.02 1.84 15 27 H 0.09 2.22 7.55 -2.39 -0.02 2.20 15 28 H 0.13 1.80 8.14 -2.39 -0.02 1.78 15 Total: -1.00 -60.51 267.59 3.63 -56.87 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: 1.17 Total: 1.47 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 3.84 Total: -8.98 kcal Atomic # 7 Polarization: -90.45 SS G_CDS: -3.33 Total: -93.77 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.08 Total: -0.51 kcal Total: -60.51 3.63 -56.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259672943.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.640 kcal (2) G-P(sol) polarization free energy of solvation -60.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds