Wall clock time and date at job start Mon Mar 30 2020 05:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00266 * 2 1 4 4 H 1.48492 * 109.47040 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46976 * 300.00153 * 3 2 1 6 6 H 1.48500 * 109.46862 * 60.00183 * 3 2 1 7 7 C 1.37884 * 119.99587 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99656 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99987 * 359.97438 * 7 2 1 10 10 O 1.42905 * 110.34887 * 299.32484 * 9 7 2 11 11 C 1.54346 * 110.30474 * 177.20100 * 9 7 2 12 12 C 1.54346 * 102.39170 * 267.42909 * 11 9 7 13 13 C 1.51369 * 105.17175 * 333.64482 * 12 11 9 14 14 C 1.38511 * 130.37422 * 197.17429 * 13 12 11 15 15 C 1.38076 * 120.23566 * 180.02562 * 14 13 12 16 16 C 1.38374 * 119.92113 * 359.97438 * 15 14 13 17 17 Cl 1.73599 * 120.04869 * 180.02562 * 16 15 14 18 18 C 1.38223 * 119.90235 * 0.02562 * 16 15 14 19 19 C 1.38219 * 109.75614 * 17.19096 * 13 12 11 20 20 H 0.97005 * 120.00008 * 359.97438 * 1 2 3 21 21 H 0.96702 * 113.99548 * 60.67654 * 10 9 7 22 22 H 1.09001 * 110.81901 * 25.65193 * 11 9 7 23 23 H 1.08993 * 110.82778 * 149.19764 * 11 9 7 24 24 H 1.09005 * 110.30198 * 214.71312 * 12 11 9 25 25 H 1.09000 * 110.30334 * 92.57262 * 12 11 9 26 26 H 1.08000 * 119.88024 * 0.02562 * 14 13 12 27 27 H 1.07996 * 120.04151 * 179.97438 * 15 14 13 28 28 H 1.08002 * 119.89421 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 8 0.4346 -2.6016 1.1679 11 6 2.2351 -3.6859 -0.0719 12 6 2.3300 -3.9467 -1.5902 13 6 1.0204 -3.4463 -2.1607 14 6 0.4193 -3.6988 -3.3828 15 6 -0.7969 -3.1225 -3.6917 16 6 -1.4183 -2.2901 -2.7776 17 17 -2.9477 -1.5643 -3.1623 18 6 -0.8195 -2.0373 -1.5577 19 6 0.4003 -2.6146 -1.2474 20 1 -0.4850 0.8401 0.0004 21 1 -0.2326 -1.9058 1.2437 22 1 3.2074 -3.4080 0.3350 23 1 1.8315 -4.5558 0.4462 24 1 2.4444 -5.0132 -1.7843 25 1 3.1654 -3.3921 -2.0177 26 1 0.9036 -4.3487 -4.0966 27 1 -1.2625 -3.3212 -4.6457 28 1 -1.3045 -1.3872 -0.8445 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259717343.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:02 Heat of formation + Delta-G solvation = -53.146480 kcal Electronic energy + Delta-G solvation = -15035.321437 eV Core-core repulsion = 12461.857277 eV Total energy + Delta-G solvation = -2573.464159 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.98625 -37.99743 -36.96512 -34.98124 -34.19740 -31.52836 -29.69177 -28.49795 -25.69468 -23.49527 -21.74717 -21.25042 -19.05665 -17.83443 -16.96528 -16.47823 -16.08274 -15.55223 -15.42671 -14.57990 -14.30774 -14.09602 -13.77869 -13.35683 -12.96574 -12.80816 -12.62307 -12.40836 -12.29024 -12.13858 -11.94397 -11.90168 -11.61569 -11.24046 -10.64806 -10.21693 -9.46963 -9.14803 -8.17184 -6.38803 0.45595 0.70621 1.32913 1.37717 1.41352 1.50479 2.35994 2.93378 3.06074 3.75297 3.99064 4.13677 4.30137 4.39727 4.57456 4.64623 4.84061 4.92391 5.11158 5.19160 5.22578 5.30968 5.51418 5.54715 5.60690 5.82248 6.08415 6.13252 6.19554 6.67572 7.30652 7.39851 8.78941 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.020344 B = 0.012030 C = 0.009025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.986007 B = 2327.026160 C = 3101.651044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.031 3.969 3 Si 0.957 3.043 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.548 4.548 8 H 0.061 0.939 9 C 0.261 3.739 10 O -0.598 6.598 11 C -0.105 4.105 12 C -0.061 4.061 13 C -0.120 4.120 14 C -0.108 4.108 15 C -0.129 4.129 16 C -0.063 4.063 17 Cl -0.085 7.085 18 C -0.088 4.088 19 C -0.082 4.082 20 H 0.269 0.731 21 H 0.373 0.627 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.156 0.844 27 H 0.151 0.849 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.100 -5.218 -6.475 8.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.170 4.170 3 Si 0.783 3.217 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.204 1.204 7 C -0.585 4.585 8 H 0.079 0.921 9 C 0.222 3.778 10 O -0.406 6.406 11 C -0.142 4.142 12 C -0.098 4.098 13 C -0.121 4.121 14 C -0.126 4.126 15 C -0.147 4.147 16 C -0.089 4.089 17 Cl -0.056 7.056 18 C -0.107 4.107 19 C -0.083 4.083 20 H 0.078 0.922 21 H 0.222 0.778 22 H 0.093 0.907 23 H 0.084 0.916 24 H 0.116 0.884 25 H 0.101 0.899 26 H 0.174 0.826 27 H 0.168 0.832 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.004 -5.559 -6.390 8.470 hybrid contribution -0.367 1.945 0.071 1.981 sum -0.363 -3.614 -6.319 7.289 Atomic orbital electron populations 1.69652 1.06610 1.27740 1.49557 1.25678 0.95840 1.02141 0.93364 0.85523 0.79130 0.79596 0.77475 1.19334 1.21059 1.20400 1.21893 0.93562 0.91432 1.51632 0.92099 1.18674 0.86210 0.93542 0.79332 1.86161 1.52052 1.55339 1.47061 1.22263 0.98792 0.96786 0.96387 1.20902 0.93595 1.01713 0.93549 1.21029 0.97775 0.98267 0.95000 1.20719 0.94904 1.01165 0.95829 1.21038 0.96168 0.98065 0.99456 1.21006 0.89393 1.01548 0.96996 1.98290 1.30271 1.82913 1.94142 1.21123 0.95703 0.97881 0.95970 1.21590 0.93268 0.93709 0.99780 0.92170 0.77779 0.90727 0.91637 0.88350 0.89889 0.82596 0.83152 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.76 8.13 21.45 0.17 -46.58 15 2 C 0.03 1.61 5.25 84.66 0.44 2.05 15 3 Si 0.96 42.07 29.54 68.60 2.03 44.09 15 4 H -0.27 -11.59 7.11 99.48 0.71 -10.89 15 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 15 6 H -0.28 -12.03 7.11 99.48 0.71 -11.32 15 7 C -0.55 -28.78 8.24 25.60 0.21 -28.57 15 8 H 0.06 3.17 7.57 -2.91 -0.02 3.14 15 9 C 0.26 12.86 0.92 -11.62 -0.01 12.85 15 10 O -0.60 -31.44 13.03 -148.98 -1.94 -33.38 15 11 C -0.10 -4.24 6.31 31.51 0.20 -4.04 15 12 C -0.06 -2.08 6.76 30.52 0.21 -1.87 15 13 C -0.12 -4.73 6.14 -19.59 -0.12 -4.85 15 14 C -0.11 -3.57 10.04 22.30 0.22 -3.35 15 15 C -0.13 -4.35 9.83 22.26 0.22 -4.13 15 16 C -0.06 -2.50 6.32 22.30 0.14 -2.36 15 17 Cl -0.08 -2.98 28.96 -2.72 -0.08 -3.05 15 18 C -0.09 -4.07 8.47 22.32 0.19 -3.88 15 19 C -0.08 -3.85 4.81 -19.60 -0.09 -3.95 15 20 H 0.27 13.48 8.31 -92.70 -0.77 12.71 15 21 H 0.37 19.99 7.23 -74.06 -0.54 19.45 15 22 H 0.07 2.91 7.73 -2.39 -0.02 2.89 15 23 H 0.06 2.54 8.11 -2.39 -0.02 2.52 15 24 H 0.10 2.64 8.14 -2.38 -0.02 2.62 15 25 H 0.08 2.72 8.14 -2.39 -0.02 2.70 15 26 H 0.16 3.81 8.06 -2.91 -0.02 3.78 15 27 H 0.15 4.04 8.06 -2.91 -0.02 4.01 15 28 H 0.14 6.85 6.01 -2.91 -0.02 6.83 15 Total: -1.00 -56.84 251.42 2.44 -54.40 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.65 Total: 26.63 kcal Atomic # 6 Polarization: -43.72 SS G_CDS: 1.61 Total: -42.11 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.17 Total: -46.58 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -1.94 Total: -33.38 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 17 Polarization: -2.98 SS G_CDS: -0.08 Total: -3.05 kcal Total: -56.84 2.44 -54.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259717343.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.252 kcal (2) G-P(sol) polarization free energy of solvation -56.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds