Wall clock time and date at job start Mon Mar 30 2020 05:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00115 * 2 1 4 4 H 1.48507 * 109.47201 * 270.00449 * 3 2 1 5 5 H 1.48501 * 109.47147 * 30.00243 * 3 2 1 6 6 H 1.48495 * 109.47308 * 150.00305 * 3 2 1 7 7 C 1.37881 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99914 * 185.54083 * 7 2 1 9 9 C 1.50698 * 120.00141 * 5.53818 * 7 2 1 10 10 O 1.42898 * 110.26789 * 303.01271 * 9 7 2 11 11 C 1.54347 * 110.30081 * 65.08379 * 9 7 2 12 12 C 1.54346 * 102.38860 * 145.37415 * 11 9 7 13 13 C 1.51367 * 105.17248 * 333.64649 * 12 11 9 14 14 C 1.38512 * 130.37433 * 197.16642 * 13 12 11 15 15 C 1.38088 * 120.23533 * 180.02562 * 14 13 12 16 16 C 1.38371 * 119.91784 * 359.97438 * 15 14 13 17 17 Cl 1.73600 * 120.04577 * 180.02562 * 16 15 14 18 18 C 1.38226 * 119.90504 * 0.27861 * 16 15 14 19 19 C 1.38226 * 109.75618 * 17.19662 * 13 12 11 20 20 H 0.96998 * 120.00064 * 359.97438 * 1 2 3 21 21 H 0.96696 * 113.99978 * 302.07207 * 10 9 7 22 22 H 1.08991 * 110.82305 * 27.14862 * 11 9 7 23 23 H 1.09002 * 110.99536 * 263.67075 * 11 9 7 24 24 H 1.09003 * 110.30045 * 214.72286 * 12 11 9 25 25 H 1.08997 * 110.30407 * 92.57334 * 12 11 9 26 26 H 1.07995 * 119.88263 * 0.02562 * 14 13 12 27 27 H 1.07998 * 120.04097 * 179.97438 * 15 14 13 28 28 H 1.08006 * 119.89592 * 179.69786 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0807 -1.1963 0.0898 9 6 1.2563 -2.4961 -0.1271 10 8 0.2856 -2.6125 0.9151 11 6 0.5732 -2.5891 -1.5080 12 6 0.6745 -4.0960 -1.8266 13 6 1.8841 -4.5830 -1.0581 14 6 2.6326 -5.7396 -1.2020 15 6 3.7113 -5.9773 -0.3734 16 6 4.0468 -5.0571 0.6040 17 17 5.4028 -5.3523 1.6471 18 6 3.2976 -3.9050 0.7521 19 6 2.2184 -3.6638 -0.0815 20 1 -0.4850 0.8400 0.0004 21 1 0.6572 -2.5611 1.8063 22 1 1.1139 -1.9994 -2.2482 23 1 -0.4688 -2.2745 -1.4503 24 1 0.8198 -4.2474 -2.8963 25 1 -0.2225 -4.6151 -1.4888 26 1 2.3715 -6.4580 -1.9649 27 1 4.2925 -6.8804 -0.4880 28 1 3.5566 -3.1891 1.5182 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259717345.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:05 Heat of formation + Delta-G solvation = -36.337494 kcal Electronic energy + Delta-G solvation = -14743.924083 eV Core-core repulsion = 12171.188816 eV Total energy + Delta-G solvation = -2572.735267 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.59518 -36.64838 -35.55565 -33.08154 -32.21513 -30.57137 -28.08572 -26.83564 -23.83188 -22.13218 -20.41924 -19.64878 -17.09018 -16.37885 -15.04591 -14.84115 -14.65923 -14.20767 -13.60210 -13.17216 -12.97679 -12.79735 -12.24099 -11.61502 -11.21783 -11.18996 -10.97236 -10.79579 -10.77856 -10.64692 -10.46680 -10.20197 -10.08791 -9.11482 -8.63427 -8.37184 -8.26089 -7.90361 -6.06533 -4.24504 1.66233 1.82707 2.48640 3.24666 3.32419 3.35395 4.13712 4.35378 5.03473 5.18634 5.34277 5.42129 5.73251 5.82409 5.91028 6.03486 6.17713 6.23507 6.41205 6.60367 6.66327 6.70881 7.06541 7.20788 7.31666 7.37960 7.61115 7.77361 8.09273 8.74653 9.27240 9.50829 10.95307 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.025706 B = 0.008934 C = 0.007257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.961292 B = 3133.511713 C = 3857.514021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.083 3.917 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.564 4.564 8 H 0.059 0.941 9 C 0.289 3.711 10 O -0.548 6.548 11 C -0.082 4.082 12 C -0.087 4.087 13 C -0.090 4.090 14 C -0.109 4.109 15 C -0.125 4.125 16 C -0.043 4.043 17 Cl -0.091 7.091 18 C -0.088 4.088 19 C -0.073 4.073 20 H 0.260 0.740 21 H 0.352 0.648 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.120 0.880 27 H 0.124 0.876 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.603 -8.732 -1.014 9.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.124 4.124 3 Si 0.714 3.286 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.601 4.601 8 H 0.078 0.922 9 C 0.249 3.751 10 O -0.351 6.351 11 C -0.120 4.120 12 C -0.124 4.124 13 C -0.090 4.090 14 C -0.127 4.127 15 C -0.144 4.144 16 C -0.070 4.070 17 Cl -0.062 7.062 18 C -0.107 4.107 19 C -0.074 4.074 20 H 0.070 0.930 21 H 0.196 0.804 22 H 0.088 0.912 23 H 0.099 0.901 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.138 0.862 27 H 0.142 0.858 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.130 -8.696 -1.444 9.735 hybrid contribution 1.179 0.913 0.552 1.591 sum 5.310 -7.783 -0.892 9.464 Atomic orbital electron populations 1.70114 1.05724 1.26398 1.46394 1.24995 0.94719 0.98908 0.93774 0.86695 0.80087 0.83500 0.78312 1.20456 1.21131 1.19792 1.21502 0.93541 0.90531 1.54565 0.92250 1.18209 0.82904 0.87711 0.86278 1.86510 1.36894 1.95687 1.15984 1.22070 1.02356 0.91188 0.96409 1.21244 0.94390 0.98724 0.98058 1.20928 0.96843 0.93767 0.97483 1.20477 0.95382 0.97127 0.99723 1.20709 0.98654 0.99070 0.95993 1.20732 0.92402 0.97686 0.96133 1.98320 1.45042 1.96019 1.66815 1.20588 0.94495 0.95295 1.00344 1.21985 0.94657 0.97906 0.92868 0.92974 0.80350 0.91208 0.90109 0.91837 0.90836 0.86163 0.85778 0.85296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.46 12.16 55.43 0.67 -22.79 15 2 C 0.08 2.19 5.27 -17.82 -0.09 2.10 15 3 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 15 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 7 C -0.56 -14.75 7.98 -34.44 -0.27 -15.03 15 8 H 0.06 1.57 7.58 -52.49 -0.40 1.17 15 9 C 0.29 6.92 0.80 -91.89 -0.07 6.85 15 10 O -0.55 -13.61 12.18 -35.23 -0.43 -14.04 15 11 C -0.08 -1.86 5.66 -25.32 -0.14 -2.00 15 12 C -0.09 -1.62 6.77 -26.85 -0.18 -1.80 15 13 C -0.09 -1.72 6.14 -104.20 -0.64 -2.36 15 14 C -0.11 -1.76 10.04 -39.54 -0.40 -2.16 15 15 C -0.13 -1.98 9.83 -39.59 -0.39 -2.37 15 16 C -0.04 -0.74 6.32 -39.54 -0.25 -0.99 15 17 Cl -0.09 -1.37 28.96 -51.86 -1.50 -2.87 15 18 C -0.09 -1.73 9.41 -39.50 -0.37 -2.10 15 19 C -0.07 -1.56 5.25 -104.21 -0.55 -2.11 15 20 H 0.26 6.88 8.31 -40.82 -0.34 6.54 15 21 H 0.35 7.95 9.07 45.56 0.41 8.37 15 22 H 0.07 1.60 7.91 -51.93 -0.41 1.19 15 23 H 0.08 1.95 8.08 -51.93 -0.42 1.53 15 24 H 0.06 1.02 8.14 -51.93 -0.42 0.59 15 25 H 0.07 1.31 8.14 -51.93 -0.42 0.88 15 26 H 0.12 1.58 8.06 -52.49 -0.42 1.16 15 27 H 0.12 1.61 8.06 -52.49 -0.42 1.19 15 28 H 0.13 2.51 8.06 -52.48 -0.42 2.09 15 LS Contribution 259.03 15.07 3.90 3.90 Total: -1.00 -27.86 259.03 -7.80 -35.66 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -2.06 Total: 6.63 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -3.36 Total: -21.97 kcal Atomic # 7 Polarization: -23.46 SS G_CDS: 0.67 Total: -22.79 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.43 Total: -14.04 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -1.50 Total: -2.87 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.86 -7.80 -35.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259717345.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.674 kcal (2) G-P(sol) polarization free energy of solvation -27.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds