Wall clock time and date at job start Mon Mar 30 2020 05:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00115 * 2 1 4 4 H 1.48507 * 109.47201 * 270.00449 * 3 2 1 5 5 H 1.48501 * 109.47147 * 30.00243 * 3 2 1 6 6 H 1.48495 * 109.47308 * 150.00305 * 3 2 1 7 7 C 1.37881 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99914 * 185.54083 * 7 2 1 9 9 C 1.50698 * 120.00141 * 5.53818 * 7 2 1 10 10 O 1.42898 * 110.26789 * 303.01271 * 9 7 2 11 11 C 1.54347 * 110.30081 * 65.08379 * 9 7 2 12 12 C 1.54346 * 102.38860 * 145.37415 * 11 9 7 13 13 C 1.51367 * 105.17248 * 333.64649 * 12 11 9 14 14 C 1.38512 * 130.37433 * 197.16642 * 13 12 11 15 15 C 1.38088 * 120.23533 * 180.02562 * 14 13 12 16 16 C 1.38371 * 119.91784 * 359.97438 * 15 14 13 17 17 Cl 1.73600 * 120.04577 * 180.02562 * 16 15 14 18 18 C 1.38226 * 119.90504 * 0.27861 * 16 15 14 19 19 C 1.38226 * 109.75618 * 17.19662 * 13 12 11 20 20 H 0.96998 * 120.00064 * 359.97438 * 1 2 3 21 21 H 0.96696 * 113.99978 * 302.07207 * 10 9 7 22 22 H 1.08991 * 110.82305 * 27.14862 * 11 9 7 23 23 H 1.09002 * 110.99536 * 263.67075 * 11 9 7 24 24 H 1.09003 * 110.30045 * 214.72286 * 12 11 9 25 25 H 1.08997 * 110.30407 * 92.57334 * 12 11 9 26 26 H 1.07995 * 119.88263 * 0.02562 * 14 13 12 27 27 H 1.07998 * 120.04097 * 179.97438 * 15 14 13 28 28 H 1.08006 * 119.89592 * 179.69786 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0807 -1.1963 0.0898 9 6 1.2563 -2.4961 -0.1271 10 8 0.2856 -2.6125 0.9151 11 6 0.5732 -2.5891 -1.5080 12 6 0.6745 -4.0960 -1.8266 13 6 1.8841 -4.5830 -1.0581 14 6 2.6326 -5.7396 -1.2020 15 6 3.7113 -5.9773 -0.3734 16 6 4.0468 -5.0571 0.6040 17 17 5.4028 -5.3523 1.6471 18 6 3.2976 -3.9050 0.7521 19 6 2.2184 -3.6638 -0.0815 20 1 -0.4850 0.8400 0.0004 21 1 0.6572 -2.5611 1.8063 22 1 1.1139 -1.9994 -2.2482 23 1 -0.4688 -2.2745 -1.4503 24 1 0.8198 -4.2474 -2.8963 25 1 -0.2225 -4.6151 -1.4888 26 1 2.3715 -6.4580 -1.9649 27 1 4.2925 -6.8804 -0.4880 28 1 3.5566 -3.1891 1.5182 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259717345.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:04 Heat of formation + Delta-G solvation = -53.105520 kcal Electronic energy + Delta-G solvation = -14744.651199 eV Core-core repulsion = 12171.188816 eV Total energy + Delta-G solvation = -2573.462383 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.09236 -38.11082 -37.04914 -34.71762 -34.24049 -32.02556 -29.60785 -28.62400 -25.62507 -23.59266 -21.84319 -21.36705 -19.03689 -17.89132 -16.70804 -16.46165 -16.33634 -15.80975 -15.14115 -14.70835 -14.50130 -14.23766 -13.91190 -13.33376 -12.98564 -12.92555 -12.62486 -12.56201 -12.21220 -12.15287 -12.07899 -11.84832 -11.68111 -10.93747 -10.62840 -10.15975 -9.76360 -9.32266 -8.08696 -6.32426 0.27401 0.44145 1.17954 1.38901 1.41393 1.49972 2.39658 2.73967 3.15258 3.64657 3.88363 4.06572 4.15881 4.34923 4.49241 4.51244 4.70326 4.77146 5.01373 5.07299 5.25007 5.31174 5.39026 5.53378 5.66055 5.70982 5.90585 5.95294 6.16458 6.71994 7.32873 7.53026 8.92157 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.025706 B = 0.008934 C = 0.007257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.961292 B = 3133.511713 C = 3857.514021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.040 3.960 3 Si 0.945 3.055 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.574 4.574 8 H 0.049 0.951 9 C 0.276 3.724 10 O -0.564 6.564 11 C -0.083 4.083 12 C -0.076 4.076 13 C -0.101 4.101 14 C -0.097 4.097 15 C -0.113 4.113 16 C -0.047 4.047 17 Cl -0.072 7.072 18 C -0.104 4.104 19 C -0.106 4.106 20 H 0.260 0.740 21 H 0.356 0.644 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.161 0.839 27 H 0.162 0.838 28 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.922 -10.617 -1.835 12.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.164 4.164 3 Si 0.770 3.230 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.612 4.612 8 H 0.067 0.933 9 C 0.237 3.763 10 O -0.368 6.368 11 C -0.121 4.121 12 C -0.113 4.113 13 C -0.101 4.101 14 C -0.115 4.115 15 C -0.131 4.131 16 C -0.073 4.073 17 Cl -0.043 7.043 18 C -0.123 4.123 19 C -0.107 4.107 20 H 0.069 0.931 21 H 0.200 0.800 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.112 0.888 25 H 0.099 0.901 26 H 0.179 0.821 27 H 0.179 0.821 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.462 -10.586 -2.264 12.125 hybrid contribution 0.840 1.439 0.853 1.872 sum 6.302 -9.147 -1.411 11.197 Atomic orbital electron populations 1.70225 1.06913 1.26931 1.47640 1.25652 0.95400 1.01773 0.93603 0.85785 0.78849 0.79981 0.78343 1.19979 1.20833 1.19664 1.21780 0.93223 0.92167 1.54038 0.93316 1.18318 0.83448 0.88245 0.86338 1.86466 1.37936 1.95807 1.16541 1.21922 1.00191 0.94371 0.95657 1.21125 0.94860 0.95307 0.99970 1.21065 0.97364 0.94648 0.97009 1.20873 0.94225 0.96338 1.00046 1.21170 0.98201 0.99470 0.94304 1.20834 0.92583 0.97127 0.96765 1.98327 1.43855 1.95804 1.66361 1.20537 0.95029 0.96412 1.00324 1.21714 0.95633 0.98040 0.95269 0.93105 0.79988 0.92587 0.92689 0.88766 0.90079 0.82103 0.82093 0.86664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.99 12.16 21.45 0.26 -49.73 15 2 C 0.04 2.14 5.27 84.66 0.45 2.59 15 3 Si 0.94 42.86 29.54 68.60 2.03 44.89 15 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 6 H -0.27 -12.15 7.11 99.48 0.71 -11.45 15 7 C -0.57 -30.96 7.98 25.60 0.20 -30.76 15 8 H 0.05 2.65 7.58 -2.91 -0.02 2.63 15 9 C 0.28 13.58 0.80 -11.62 -0.01 13.57 15 10 O -0.56 -29.07 12.18 -148.98 -1.82 -30.89 15 11 C -0.08 -3.85 5.66 31.51 0.18 -3.67 15 12 C -0.08 -2.70 6.77 30.52 0.21 -2.50 15 13 C -0.10 -3.64 6.14 -19.59 -0.12 -3.76 15 14 C -0.10 -2.73 10.04 22.30 0.22 -2.51 15 15 C -0.11 -3.08 9.83 22.27 0.22 -2.87 15 16 C -0.05 -1.50 6.32 22.30 0.14 -1.36 15 17 Cl -0.07 -2.02 28.96 -2.72 -0.08 -2.10 15 18 C -0.10 -4.05 9.41 22.32 0.21 -3.84 15 19 C -0.11 -4.50 5.25 -19.60 -0.10 -4.60 15 20 H 0.26 14.09 8.31 -92.71 -0.77 13.32 15 21 H 0.36 16.90 9.07 -74.06 -0.67 16.22 15 22 H 0.06 2.65 7.91 -2.39 -0.02 2.63 15 23 H 0.05 2.75 8.08 -2.39 -0.02 2.73 15 24 H 0.09 2.75 8.14 -2.39 -0.02 2.73 15 25 H 0.08 2.75 8.14 -2.39 -0.02 2.73 15 26 H 0.16 3.25 8.06 -2.91 -0.02 3.22 15 27 H 0.16 3.24 8.06 -2.91 -0.02 3.21 15 28 H 0.12 4.64 8.06 -2.91 -0.02 4.62 15 Total: -1.00 -60.78 259.03 2.50 -58.28 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.51 Total: 19.25 kcal Atomic # 6 Polarization: -41.30 SS G_CDS: 1.60 Total: -39.70 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.26 Total: -49.73 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -1.82 Total: -30.89 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.08 Total: -2.10 kcal Total: -60.78 2.50 -58.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259717345.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.174 kcal (2) G-P(sol) polarization free energy of solvation -60.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds