Wall clock time and date at job start Mon Mar 30 2020 05:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31047 * 1 3 3 Si 1.86800 * 119.99689 * 2 1 4 4 H 1.48501 * 109.46836 * 271.76586 * 3 2 1 5 5 H 1.48495 * 109.47573 * 31.76613 * 3 2 1 6 6 H 1.48504 * 109.47218 * 151.76901 * 3 2 1 7 7 C 1.39714 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00225 * 343.90795 * 7 2 1 9 9 C 1.40703 * 119.99957 * 163.90456 * 7 2 1 10 10 C 1.41726 * 126.64492 * 341.17405 * 9 7 2 11 11 N 1.30174 * 108.63316 * 180.02562 * 10 9 7 12 12 N 1.39847 * 109.79034 * 359.77036 * 11 10 9 13 13 H 0.96999 * 125.82707 * 180.24228 * 12 11 10 14 14 C 1.36750 * 108.34380 * 0.37899 * 12 11 10 15 15 C 1.41661 * 126.74219 * 179.90095 * 14 12 11 16 16 C 1.38238 * 126.10776 * 314.97770 * 15 14 12 17 17 C 1.40348 * 106.53598 * 180.09097 * 16 15 14 18 18 Cl 1.73604 * 126.39523 * 179.90005 * 17 16 15 19 19 C 1.35291 * 107.20902 * 359.64175 * 17 16 15 20 20 O 1.34258 * 109.03215 * 0.22295 * 19 17 16 21 21 H 0.97000 * 120.00119 * 0.02562 * 1 2 3 22 22 H 1.08006 * 125.67875 * 0.02562 * 10 9 7 23 23 H 1.08005 * 126.72620 * 359.96078 * 16 15 14 24 24 H 1.07994 * 125.48658 * 180.24533 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3105 0.0000 0.0000 3 14 2.2444 1.6178 0.0000 4 1 2.4545 2.0680 -1.3994 5 1 1.4611 2.6416 0.7370 6 1 3.5602 1.4298 0.6623 7 6 2.0091 -1.2099 0.0005 8 1 1.5009 -2.1268 0.2602 9 6 3.3747 -1.2339 -0.3373 10 6 4.0894 -0.2337 -1.0426 11 7 5.3285 -0.6142 -1.1625 12 7 5.5025 -1.8600 -0.5514 13 1 6.3342 -2.3565 -0.5011 14 6 4.2991 -2.2601 -0.0395 15 6 4.0330 -3.4642 0.6577 16 6 4.4645 -4.7270 0.2968 17 6 3.9682 -5.6111 1.2673 18 17 4.2036 -7.3306 1.3107 19 6 3.2770 -4.8726 2.1656 20 8 3.3182 -3.5825 1.7960 21 1 -0.4850 0.8400 -0.0004 22 1 3.6749 0.6903 -1.4180 23 1 5.0639 -4.9831 -0.5643 24 1 2.7735 -5.2585 3.0396 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259735145.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:37 Heat of formation + Delta-G solvation = 54.776728 kcal Electronic energy + Delta-G solvation = -14101.868911 eV Core-core repulsion = 11429.544310 eV Total energy + Delta-G solvation = -2672.324601 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.025 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.41820 -41.29939 -37.61554 -35.59576 -33.90486 -32.75157 -32.38485 -29.53096 -26.73043 -23.60334 -22.92054 -22.33637 -21.00637 -19.85395 -18.33978 -17.20332 -17.03122 -16.64111 -15.88253 -15.57524 -15.19850 -14.72888 -14.19046 -14.09347 -13.71576 -13.30496 -13.13080 -12.92339 -12.78270 -11.91045 -11.78531 -11.38867 -11.23670 -10.68599 -10.30618 -9.82786 -8.99730 -8.83468 -6.26072 0.14686 0.97474 1.11018 1.25840 1.38750 1.48154 1.53747 1.78703 2.07684 2.15396 2.65285 3.20127 3.88577 3.98130 4.07126 4.35189 4.57648 4.75948 4.98703 5.10736 5.21043 5.36189 5.60451 6.09633 6.21200 6.56758 6.70782 6.73558 7.04701 8.25970 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.035746 B = 0.007439 C = 0.006424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.112643 B = 3762.943702 C = 4357.514125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.045 3.955 3 Si 0.958 3.042 4 H -0.242 1.242 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.440 4.440 8 H 0.053 0.947 9 C -0.004 4.004 10 C -0.044 4.044 11 N -0.266 5.266 12 N -0.460 5.460 13 H 0.442 0.558 14 C -0.065 4.065 15 C 0.102 3.898 16 C -0.215 4.215 17 C -0.128 4.128 18 Cl -0.029 7.029 19 C -0.035 4.035 20 O -0.170 6.170 21 H 0.294 0.706 22 H 0.177 0.823 23 H 0.165 0.835 24 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.900 -6.326 2.631 9.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.169 4.169 3 Si 0.781 3.219 4 H -0.167 1.167 5 H -0.200 1.200 6 H -0.180 1.180 7 C -0.472 4.472 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.231 4.231 11 N -0.091 5.091 12 N -0.182 5.182 13 H 0.288 0.712 14 C -0.184 4.184 15 C 0.050 3.950 16 C -0.236 4.236 17 C -0.156 4.156 18 Cl 0.000 7.000 19 C -0.104 4.104 20 O -0.064 6.064 21 H 0.105 0.895 22 H 0.193 0.807 23 H 0.182 0.818 24 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 7.571 -5.835 2.364 9.846 hybrid contribution -0.507 -0.281 0.295 0.650 sum 7.064 -6.116 2.658 9.714 Atomic orbital electron populations 1.69774 1.08968 1.31439 1.37458 1.26696 0.95429 1.03925 0.90843 0.85718 0.79227 0.76572 0.80391 1.16718 1.19973 1.17978 1.18489 0.92041 0.95345 1.41285 0.92895 1.18430 0.93736 0.92218 0.97051 1.23856 0.92116 1.02059 1.05052 1.76168 1.19184 0.96272 1.17499 1.45484 1.08347 1.15341 1.48992 0.71179 1.16674 0.87905 0.99451 1.14392 1.18153 0.97075 0.92743 0.87029 1.21954 1.09062 0.89614 1.02982 1.20912 1.07601 0.87001 1.00108 1.98309 1.96221 1.07165 1.98324 1.24596 1.04006 0.79611 1.02224 1.84365 1.58512 1.28369 1.35153 0.89507 0.80703 0.81760 0.74370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.42 13.94 21.80 0.30 -45.12 14 2 C 0.05 2.36 5.50 85.17 0.47 2.82 14 3 Si 0.96 39.96 24.52 68.60 1.68 41.64 14 4 H -0.24 -9.13 6.69 99.48 0.67 -8.46 14 5 H -0.27 -10.77 7.11 99.48 0.71 -10.07 14 6 H -0.26 -10.98 6.54 99.48 0.65 -10.33 14 7 C -0.44 -24.28 9.63 23.23 0.22 -24.06 14 8 H 0.05 3.22 8.06 -2.91 -0.02 3.19 14 9 C 0.00 -0.22 5.51 -21.07 -0.12 -0.33 14 10 C -0.04 -2.01 9.23 85.80 0.79 -1.22 14 11 N -0.27 -11.38 12.56 -56.12 -0.70 -12.09 14 12 N -0.46 -18.08 7.40 -49.89 -0.37 -18.45 14 13 H 0.44 13.64 8.96 -213.48 -1.91 11.73 14 14 C -0.07 -2.94 6.98 39.97 0.28 -2.66 14 15 C 0.10 4.22 6.73 23.12 0.16 4.38 14 16 C -0.22 -7.45 10.91 22.78 0.25 -7.20 14 17 C -0.13 -3.99 6.70 22.10 0.15 -3.84 14 18 Cl -0.03 -0.73 29.31 -2.72 -0.08 -0.81 14 19 C -0.03 -1.10 12.05 67.14 0.81 -0.29 14 20 O -0.17 -6.99 10.68 -8.36 -0.09 -7.07 14 21 H 0.29 14.08 8.30 -92.71 -0.77 13.31 14 22 H 0.18 7.47 4.24 -2.91 -0.01 7.46 14 23 H 0.16 5.00 8.06 -2.91 -0.02 4.97 14 24 H 0.24 5.27 8.06 -2.91 -0.02 5.24 14 Total: -1.00 -60.27 237.66 3.01 -57.26 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -0.74 Total: 17.05 kcal Atomic # 6 Polarization: -35.41 SS G_CDS: 3.01 Total: -32.40 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -0.77 Total: -75.66 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.09 Total: -7.07 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 1.68 Total: 41.64 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -60.27 3.01 -57.26 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259735145.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.034 kcal (2) G-P(sol) polarization free energy of solvation -60.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds