Wall clock time and date at job start Mon Mar 30 2020 05:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99391 * 3 2 1 5 5 H 1.48498 * 109.47340 * 29.99642 * 3 2 1 6 6 H 1.48501 * 109.47391 * 149.99714 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.46817 * 179.97438 * 9 7 2 11 11 O 1.20759 * 120.00113 * 359.72402 * 10 9 7 12 12 C 1.50700 * 119.99815 * 179.97438 * 10 9 7 13 13 C 1.50697 * 109.47266 * 179.97438 * 12 10 9 14 14 C 1.38239 * 119.98700 * 269.73028 * 13 12 10 15 15 C 1.38217 * 120.00886 * 179.72837 * 14 13 12 16 16 C 1.38356 * 119.98828 * 0.54394 * 15 14 13 17 17 Cl 1.73593 * 120.01440 * 179.70994 * 16 15 14 18 18 C 1.38356 * 119.97034 * 359.72711 * 16 15 14 19 19 C 1.38205 * 119.98936 * 0.02562 * 18 16 15 20 20 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 22 22 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 23 23 H 1.08997 * 109.47392 * 300.00326 * 12 10 9 24 24 H 1.09004 * 109.46932 * 59.99665 * 12 10 9 25 25 H 1.07995 * 119.99511 * 359.97438 * 14 13 12 26 26 H 1.08000 * 120.00402 * 180.27038 * 15 14 13 27 27 H 1.08005 * 120.00081 * 179.97438 * 18 16 15 28 28 H 1.08001 * 119.99462 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2305 -3.6446 0.0005 11 8 3.4177 -3.4239 -0.0045 12 6 1.7282 -5.0654 0.0011 13 6 2.9003 -6.0126 0.0004 14 6 3.4333 -6.4514 -1.1973 15 6 4.5119 -7.3157 -1.1986 16 6 5.0510 -7.7505 -0.0009 17 17 6.4009 -8.8420 -0.0017 18 6 4.5135 -7.3154 1.1975 19 6 3.4383 -6.4471 1.1975 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5568 0.8903 23 1 1.1229 -5.2365 0.8913 24 1 1.1223 -5.2369 -0.8886 25 1 3.0093 -6.1157 -2.1321 26 1 4.9309 -7.6551 -2.1343 27 1 4.9337 -7.6548 2.1327 28 1 3.0184 -6.1077 2.1328 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259754312.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:57 Heat of formation + Delta-G solvation = -35.248806 kcal Electronic energy + Delta-G solvation = -13746.347255 eV Core-core repulsion = 11173.659196 eV Total energy + Delta-G solvation = -2572.688058 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.60579 -38.05705 -36.45697 -32.97811 -32.45570 -31.02523 -29.40439 -27.11464 -23.61286 -22.80665 -21.41524 -18.68380 -17.06515 -16.36091 -15.64342 -15.38690 -14.98119 -14.35228 -14.03986 -13.77692 -13.46659 -13.33847 -12.89300 -12.03683 -11.97684 -11.47823 -11.36296 -11.25267 -11.09483 -10.80866 -10.80201 -10.64399 -10.04045 -9.32620 -8.98865 -8.78504 -8.47180 -8.20207 -6.09365 -4.10285 1.19677 1.35010 2.11519 2.99380 3.31462 3.37199 3.43833 3.66598 4.42272 4.78768 4.83700 4.90428 5.16630 5.28065 5.33629 5.38334 5.65869 5.69431 5.92234 5.99855 6.23229 6.24178 6.61004 6.63369 6.87821 7.18758 7.30170 7.89793 8.18210 8.65181 8.99410 9.55178 11.02483 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.050943 B = 0.004533 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.501189 B = 6175.055747 C = 6414.521124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.517 4.517 8 H 0.072 0.928 9 C -0.025 4.025 10 C 0.356 3.644 11 O -0.457 6.457 12 C -0.145 4.145 13 C -0.052 4.052 14 C -0.099 4.099 15 C -0.109 4.109 16 C -0.043 4.043 17 Cl -0.083 7.083 18 C -0.109 4.109 19 C -0.099 4.099 20 H 0.262 0.738 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.103 0.897 24 H 0.103 0.897 25 H 0.130 0.870 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.887 -16.019 0.012 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.555 4.555 8 H 0.090 0.910 9 C -0.062 4.062 10 C 0.232 3.768 11 O -0.330 6.330 12 C -0.183 4.183 13 C -0.052 4.052 14 C -0.118 4.118 15 C -0.127 4.127 16 C -0.069 4.069 17 Cl -0.054 7.054 18 C -0.128 4.128 19 C -0.118 4.118 20 H 0.071 0.929 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.121 0.879 24 H 0.121 0.879 25 H 0.148 0.852 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.497 -15.878 0.014 16.803 hybrid contribution 0.373 0.803 -0.013 0.885 sum 5.870 -15.076 0.001 16.178 Atomic orbital electron populations 1.69955 1.06028 1.26931 1.50938 1.25004 0.94893 0.99472 0.95101 0.86477 0.79887 0.82813 0.78210 1.20584 1.21208 1.19712 1.21185 0.94129 0.89647 1.50549 0.91011 1.19605 0.95046 0.91851 0.99693 1.25147 0.91117 0.90575 0.69996 1.90272 1.19791 1.87282 1.35655 1.21453 0.96585 0.94998 1.05265 1.19803 0.96819 0.95470 0.93155 1.21003 0.95855 0.96717 0.98192 1.20971 0.96698 0.98376 0.96704 1.20854 0.92814 0.97911 0.95369 1.98346 1.45113 1.62963 1.98990 1.20969 0.96752 0.98339 0.96696 1.21003 0.95869 0.96682 0.98208 0.92871 0.92955 0.92957 0.87893 0.87889 0.85167 0.85199 0.85198 0.85165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.03 13.29 55.43 0.74 -25.29 15 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 15 3 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 15 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 15 7 C -0.52 -14.63 8.92 -34.44 -0.31 -14.94 15 8 H 0.07 2.11 6.76 -52.48 -0.35 1.76 15 9 C -0.03 -0.61 5.40 -29.03 -0.16 -0.77 15 10 C 0.36 7.39 7.14 -29.03 -0.21 7.18 15 11 O -0.46 -10.95 15.14 6.00 0.09 -10.86 15 12 C -0.15 -2.17 5.77 -29.04 -0.17 -2.34 15 13 C -0.05 -0.77 4.37 -104.62 -0.46 -1.23 15 14 C -0.10 -1.37 9.70 -39.59 -0.38 -1.76 15 15 C -0.11 -1.40 9.83 -39.55 -0.39 -1.79 15 16 C -0.04 -0.56 6.32 -39.49 -0.25 -0.81 15 17 Cl -0.08 -0.97 28.96 -51.86 -1.50 -2.47 15 18 C -0.11 -1.40 9.83 -39.55 -0.39 -1.79 15 19 C -0.10 -1.37 9.70 -39.59 -0.38 -1.76 15 20 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 21 H 0.05 1.28 8.14 -51.93 -0.42 0.86 15 22 H 0.05 1.28 8.14 -51.93 -0.42 0.86 15 23 H 0.10 1.32 8.09 -51.93 -0.42 0.90 15 24 H 0.10 1.32 8.08 -51.93 -0.42 0.90 15 25 H 0.13 1.59 8.06 -52.49 -0.42 1.17 15 26 H 0.13 1.40 8.06 -52.49 -0.42 0.98 15 27 H 0.13 1.40 8.06 -52.48 -0.42 0.98 15 28 H 0.13 1.59 8.06 -52.49 -0.42 1.17 15 LS Contribution 270.43 15.07 4.08 4.08 Total: -1.00 -31.09 270.43 -7.67 -38.77 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -2.87 Total: -2.54 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -3.19 Total: -18.52 kcal Atomic # 7 Polarization: -26.03 SS G_CDS: 0.74 Total: -25.29 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.09 -7.67 -38.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259754312.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.517 kcal (2) G-P(sol) polarization free energy of solvation -31.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds