Wall clock time and date at job start Mon Mar 30 2020 05:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99391 * 3 2 1 5 5 H 1.48498 * 109.47340 * 29.99642 * 3 2 1 6 6 H 1.48501 * 109.47391 * 149.99714 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.46817 * 179.97438 * 9 7 2 11 11 O 1.20759 * 120.00113 * 359.72402 * 10 9 7 12 12 C 1.50700 * 119.99815 * 179.97438 * 10 9 7 13 13 C 1.50697 * 109.47266 * 179.97438 * 12 10 9 14 14 C 1.38239 * 119.98700 * 269.73028 * 13 12 10 15 15 C 1.38217 * 120.00886 * 179.72837 * 14 13 12 16 16 C 1.38356 * 119.98828 * 0.54394 * 15 14 13 17 17 Cl 1.73593 * 120.01440 * 179.70994 * 16 15 14 18 18 C 1.38356 * 119.97034 * 359.72711 * 16 15 14 19 19 C 1.38205 * 119.98936 * 0.02562 * 18 16 15 20 20 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 22 22 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 23 23 H 1.08997 * 109.47392 * 300.00326 * 12 10 9 24 24 H 1.09004 * 109.46932 * 59.99665 * 12 10 9 25 25 H 1.07995 * 119.99511 * 359.97438 * 14 13 12 26 26 H 1.08000 * 120.00402 * 180.27038 * 15 14 13 27 27 H 1.08005 * 120.00081 * 179.97438 * 18 16 15 28 28 H 1.08001 * 119.99462 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2305 -3.6446 0.0005 11 8 3.4177 -3.4239 -0.0045 12 6 1.7282 -5.0654 0.0011 13 6 2.9003 -6.0126 0.0004 14 6 3.4333 -6.4514 -1.1973 15 6 4.5119 -7.3157 -1.1986 16 6 5.0510 -7.7505 -0.0009 17 17 6.4009 -8.8420 -0.0017 18 6 4.5135 -7.3154 1.1975 19 6 3.4383 -6.4471 1.1975 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5568 0.8903 23 1 1.1229 -5.2365 0.8913 24 1 1.1223 -5.2369 -0.8886 25 1 3.0093 -6.1157 -2.1321 26 1 4.9309 -7.6551 -2.1343 27 1 4.9337 -7.6548 2.1327 28 1 3.0184 -6.1077 2.1328 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259754312.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:57 Heat of formation + Delta-G solvation = -52.041304 kcal Electronic energy + Delta-G solvation = -13747.075432 eV Core-core repulsion = 11173.659196 eV Total energy + Delta-G solvation = -2573.416235 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.83144 -39.51628 -37.43539 -35.09808 -33.64288 -32.01370 -31.25322 -28.52166 -25.50780 -23.80280 -22.60548 -20.27313 -18.54134 -18.00892 -16.99078 -16.76143 -16.32727 -16.12467 -15.58205 -15.18994 -14.44237 -14.41259 -14.29492 -13.92720 -13.37838 -12.93245 -12.91707 -12.55801 -12.44606 -12.29155 -12.28236 -12.03757 -11.75675 -11.43918 -10.62335 -10.26893 -9.98371 -9.45835 -8.24878 -6.32621 0.15561 0.35241 1.14290 1.34906 1.38772 1.38955 1.51165 2.39183 2.62059 3.09824 3.61269 3.77846 3.81568 3.97148 4.30938 4.39241 4.64389 4.66930 4.76754 4.95683 5.01584 5.18179 5.24915 5.28780 5.33954 5.59457 5.70939 5.85505 6.14025 6.79613 6.98212 7.36471 8.86370 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.050943 B = 0.004533 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.501189 B = 6175.055747 C = 6414.521124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.010 3.990 3 Si 0.958 3.042 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.053 0.947 9 C -0.030 4.030 10 C 0.364 3.636 11 O -0.494 6.494 12 C -0.129 4.129 13 C -0.073 4.073 14 C -0.109 4.109 15 C -0.114 4.114 16 C -0.051 4.051 17 Cl -0.072 7.072 18 C -0.114 4.114 19 C -0.109 4.109 20 H 0.266 0.734 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.128 0.872 24 H 0.128 0.872 25 H 0.142 0.858 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.161 -16.746 -0.011 17.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.189 4.189 3 Si 0.783 3.217 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.581 4.581 8 H 0.071 0.929 9 C -0.067 4.067 10 C 0.242 3.758 11 O -0.370 6.370 12 C -0.166 4.166 13 C -0.073 4.073 14 C -0.127 4.127 15 C -0.132 4.132 16 C -0.077 4.077 17 Cl -0.043 7.043 18 C -0.132 4.132 19 C -0.128 4.128 20 H 0.075 0.925 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.146 0.854 24 H 0.146 0.854 25 H 0.160 0.840 26 H 0.166 0.834 27 H 0.166 0.834 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.757 -16.619 -0.011 17.587 hybrid contribution 0.311 0.984 -0.005 1.032 sum 6.068 -15.635 -0.016 16.771 Atomic orbital electron populations 1.70025 1.07059 1.27952 1.51302 1.25758 0.95798 1.02645 0.94669 0.85556 0.78542 0.79097 0.78527 1.19773 1.19984 1.19998 1.21460 0.93624 0.91975 1.51020 0.92923 1.19572 0.95575 0.92397 0.99183 1.25198 0.89652 0.92529 0.68437 1.90257 1.21002 1.88216 1.37486 1.21281 0.97174 0.90439 1.07670 1.19876 0.97280 0.96238 0.93953 1.21240 0.96147 0.96849 0.98501 1.21220 0.96423 0.98022 0.97573 1.21053 0.93090 0.97969 0.95611 1.98349 1.44472 1.62496 1.98981 1.21217 0.96475 0.97982 0.97565 1.21240 0.96164 0.96827 0.98519 0.92484 0.93430 0.93431 0.85371 0.85365 0.84030 0.83378 0.83380 0.84042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.48 13.29 21.45 0.28 -53.20 15 2 C 0.01 0.57 5.46 84.65 0.46 1.03 15 3 Si 0.96 44.85 29.54 68.60 2.03 46.88 15 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 15 5 H -0.27 -12.28 7.11 99.48 0.71 -11.57 15 6 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15 7 C -0.54 -31.18 8.92 25.60 0.23 -30.95 15 8 H 0.05 3.17 6.76 -2.91 -0.02 3.15 15 9 C -0.03 -1.49 5.40 29.10 0.16 -1.33 15 10 C 0.36 14.96 7.14 29.10 0.21 15.16 15 11 O -0.49 -23.81 15.14 -1.45 -0.02 -23.83 15 12 C -0.13 -3.61 5.77 29.10 0.17 -3.44 15 13 C -0.07 -2.04 4.37 -19.86 -0.09 -2.13 15 14 C -0.11 -2.83 9.70 22.27 0.22 -2.62 15 15 C -0.11 -2.74 9.83 22.29 0.22 -2.52 15 16 C -0.05 -1.23 6.32 22.33 0.14 -1.09 15 17 Cl -0.07 -1.54 28.96 -2.72 -0.08 -1.62 15 18 C -0.11 -2.74 9.83 22.29 0.22 -2.52 15 19 C -0.11 -2.84 9.70 22.26 0.22 -2.63 15 20 H 0.27 14.50 8.31 -92.71 -0.77 13.73 15 21 H 0.05 2.35 8.14 -2.39 -0.02 2.33 15 22 H 0.05 2.35 8.14 -2.39 -0.02 2.33 15 23 H 0.13 2.96 8.09 -2.39 -0.02 2.94 15 24 H 0.13 2.96 8.08 -2.38 -0.02 2.94 15 25 H 0.14 3.22 8.06 -2.91 -0.02 3.19 15 26 H 0.15 2.89 8.06 -2.91 -0.02 2.87 15 27 H 0.15 2.89 8.06 -2.91 -0.02 2.87 15 28 H 0.14 3.22 8.06 -2.91 -0.02 3.20 15 Total: -1.00 -66.16 270.43 5.52 -60.64 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: 1.16 Total: 4.16 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: 2.15 Total: -33.03 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.28 Total: -53.20 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.02 Total: -23.83 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -66.16 5.52 -60.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259754312.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.601 kcal (2) G-P(sol) polarization free energy of solvation -66.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds