Wall clock time and date at job start Mon Mar 30 2020 05:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99898 * 2 1 4 4 H 1.48504 * 109.46878 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47235 * 300.00080 * 3 2 1 6 6 H 1.48496 * 109.46923 * 60.00480 * 3 2 1 7 7 C 1.37879 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99689 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00323 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.69433 * 299.44341 * 9 7 2 11 11 C 1.53403 * 109.69569 * 60.00338 * 9 7 2 12 12 O 1.42828 * 108.38500 * 184.37377 * 11 9 7 13 13 C 1.35865 * 117.86874 * 310.85324 * 12 11 9 14 14 C 1.39250 * 118.49453 * 197.10823 * 13 12 11 15 15 Cl 1.73600 * 119.90766 * 0.26587 * 14 13 12 16 16 C 1.38060 * 120.18929 * 180.28730 * 14 13 12 17 17 C 1.38290 * 119.94659 * 0.04818 * 16 14 13 18 18 C 1.38097 * 119.99134 * 359.90017 * 17 16 14 19 19 C 1.38326 * 121.81035 * 17.56146 * 13 12 11 20 20 C 1.50772 * 121.39932 * 358.80973 * 19 13 12 21 21 H 0.97003 * 120.00007 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.68106 * 64.65449 * 11 9 7 23 23 H 1.08996 * 109.71498 * 304.11906 * 11 9 7 24 24 H 1.08004 * 120.02861 * 180.02562 * 16 14 13 25 25 H 1.08005 * 120.00824 * 179.97438 * 17 16 14 26 26 H 1.08002 * 119.82863 * 179.97438 * 18 17 16 27 27 H 1.09009 * 109.64907 * 258.29744 * 20 19 13 28 28 H 1.08998 * 109.26039 * 138.35900 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6308 -2.5653 0.8934 11 6 0.3667 -2.5856 -1.2510 12 8 -0.4093 -3.7821 -1.1722 13 6 0.2378 -4.9407 -0.8808 14 6 -0.4052 -6.1464 -1.1491 15 17 -1.9948 -6.1430 -1.8469 16 6 0.2176 -7.3444 -0.8614 17 6 1.4833 -7.3481 -0.3042 18 6 2.1239 -6.1540 -0.0381 19 6 1.5029 -4.9485 -0.3214 20 6 2.2409 -3.6665 -0.0301 21 1 -0.4850 0.8401 0.0004 22 1 0.9933 -2.6126 -2.1425 23 1 -0.2953 -1.7208 -1.2937 24 1 -0.2834 -8.2780 -1.0709 25 1 1.9713 -8.2848 -0.0783 26 1 3.1121 -6.1600 0.3975 27 1 2.9875 -3.4893 -0.8044 28 1 2.7347 -3.7479 0.9382 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259805706.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:49 Heat of formation + Delta-G solvation = -49.397634 kcal Electronic energy + Delta-G solvation = -14597.118633 eV Core-core repulsion = 12023.817036 eV Total energy + Delta-G solvation = -2573.301597 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.48235 -38.50560 -37.33482 -36.06417 -33.90937 -31.35107 -30.94425 -27.19442 -26.42859 -23.95592 -23.27746 -20.72190 -18.82033 -18.48325 -17.47888 -16.90623 -16.38484 -15.89169 -15.51374 -14.88714 -14.66861 -14.49695 -14.21997 -13.91834 -13.14096 -13.05581 -12.87180 -12.64388 -12.34109 -12.18351 -11.91578 -11.80355 -11.63983 -11.21613 -10.88082 -10.56661 -9.57778 -9.03051 -8.20815 -6.36111 0.21264 0.42680 1.26421 1.41172 1.43515 1.55083 2.37268 2.54552 2.73013 3.09540 3.81680 3.99104 4.18043 4.30639 4.39649 4.47506 4.59455 4.65735 4.84048 4.93848 5.03187 5.24717 5.42213 5.42750 5.57427 5.60537 5.78358 5.84160 6.14840 6.58838 6.75681 7.34373 8.86098 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.038490 B = 0.007195 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.279616 B = 3890.472428 C = 4539.794641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.532 4.532 8 H 0.068 0.932 9 C 0.014 3.986 10 H 0.000 1.000 11 C 0.073 3.927 12 O -0.334 6.334 13 C 0.113 3.887 14 C -0.091 4.091 15 Cl -0.073 7.073 16 C -0.083 4.083 17 C -0.137 4.137 18 C -0.082 4.082 19 C -0.163 4.163 20 C -0.063 4.063 21 H 0.266 0.734 22 H 0.039 0.961 23 H 0.108 0.892 24 H 0.163 0.837 25 H 0.172 0.828 26 H 0.154 0.846 27 H 0.074 0.926 28 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.146 -13.208 -1.604 13.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.570 4.570 8 H 0.086 0.914 9 C -0.005 4.005 10 H 0.019 0.981 11 C -0.002 4.002 12 O -0.248 6.248 13 C 0.067 3.933 14 C -0.118 4.118 15 Cl -0.045 7.045 16 C -0.101 4.101 17 C -0.154 4.154 18 C -0.100 4.100 19 C -0.164 4.164 20 C -0.100 4.100 21 H 0.075 0.925 22 H 0.057 0.943 23 H 0.126 0.874 24 H 0.181 0.819 25 H 0.190 0.810 26 H 0.172 0.828 27 H 0.093 0.907 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.657 -13.038 -1.707 13.415 hybrid contribution -0.051 1.461 -0.021 1.462 sum 2.606 -11.577 -1.729 11.992 Atomic orbital electron populations 1.69971 1.07484 1.27820 1.50704 1.25875 0.95685 1.02979 0.94121 0.85397 0.79168 0.78884 0.77594 1.18562 1.20538 1.20754 1.21421 0.93517 0.90670 1.51398 0.91425 1.19218 0.93868 0.94258 0.93121 0.98148 1.23258 0.95613 0.82958 0.98354 1.85988 1.38434 1.15320 1.85062 1.18992 0.92313 0.86095 0.95917 1.20687 0.89496 0.93123 1.08512 1.98317 1.24086 1.98907 1.83153 1.21192 0.95647 0.95576 0.97693 1.21358 0.94277 0.99201 1.00611 1.21376 1.00605 0.90488 0.97493 1.20289 0.94607 0.98094 1.03449 1.20528 0.97423 0.90144 1.01915 0.92496 0.94250 0.87419 0.81928 0.81022 0.82830 0.90734 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.50 11.32 21.45 0.24 -52.26 15 2 C 0.01 0.67 5.30 84.65 0.45 1.12 15 3 Si 0.96 42.12 29.54 68.60 2.03 44.15 15 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 15 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 15 6 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15 7 C -0.53 -28.29 8.55 25.60 0.22 -28.07 15 8 H 0.07 3.44 7.75 -2.91 -0.02 3.42 15 9 C 0.01 0.71 2.33 -11.38 -0.03 0.68 15 10 H 0.00 0.02 8.14 -2.38 -0.02 0.00 15 11 C 0.07 3.65 6.14 72.12 0.44 4.09 15 12 O -0.33 -15.97 9.65 -92.03 -0.89 -16.86 15 13 C 0.11 4.65 6.47 22.53 0.15 4.80 15 14 C -0.09 -3.13 6.34 22.47 0.14 -2.99 15 15 Cl -0.07 -2.44 28.40 -2.72 -0.08 -2.52 15 16 C -0.08 -2.12 9.82 22.24 0.22 -1.90 15 17 C -0.14 -3.06 10.04 22.25 0.22 -2.84 15 18 C -0.08 -2.23 9.67 22.31 0.22 -2.02 15 19 C -0.16 -6.06 5.75 -19.75 -0.11 -6.17 15 20 C -0.06 -2.57 5.14 29.90 0.15 -2.41 15 21 H 0.27 14.35 8.31 -92.71 -0.77 13.58 15 22 H 0.04 1.91 8.14 -2.39 -0.02 1.89 15 23 H 0.11 6.03 6.02 -2.39 -0.01 6.01 15 24 H 0.16 3.07 8.06 -2.91 -0.02 3.05 15 25 H 0.17 2.33 8.06 -2.91 -0.02 2.31 15 26 H 0.15 3.26 8.06 -2.91 -0.02 3.24 15 27 H 0.07 2.91 8.09 -2.38 -0.02 2.89 15 28 H 0.08 3.00 8.14 -2.39 -0.02 2.98 15 Total: -1.00 -61.35 254.53 4.54 -56.81 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: 1.17 Total: 6.38 kcal Atomic # 6 Polarization: -37.78 SS G_CDS: 2.07 Total: -35.71 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.24 Total: -52.26 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.89 Total: -16.86 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -0.08 Total: -2.52 kcal Total: -61.35 4.54 -56.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259805706.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.416 kcal (2) G-P(sol) polarization free energy of solvation -61.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds