Wall clock time and date at job start Mon Mar 30 2020 05:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08997 * 109.55002 * 299.51926 * 9 7 2 11 11 C 1.53527 * 109.55477 * 59.71757 * 9 7 2 12 12 S 1.81602 * 107.31792 * 192.38855 * 11 9 7 13 13 C 1.76458 * 102.63725 * 313.61789 * 12 11 9 14 14 C 1.39807 * 117.72016 * 193.33576 * 13 12 11 15 15 F 1.35104 * 119.70613 * 0.49411 * 14 13 12 16 16 C 1.37903 * 120.59278 * 180.52226 * 14 13 12 17 17 C 1.38368 * 119.48401 * 0.11660 * 16 14 13 18 18 C 1.37724 * 120.01776 * 359.67533 * 17 16 14 19 19 C 1.38076 * 122.31767 * 13.39456 * 13 12 11 20 20 C 1.50054 * 124.74691 * 358.07660 * 19 13 12 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.88903 * 311.84505 * 11 9 7 23 23 H 1.09002 * 109.88578 * 72.94045 * 11 9 7 24 24 H 1.07995 * 120.25933 * 180.09672 * 16 14 13 25 25 H 1.08000 * 119.99337 * 179.69776 * 17 16 14 26 26 H 1.08000 * 119.45192 * 179.97438 * 18 17 16 27 27 H 1.09002 * 108.66753 * 262.21790 * 20 19 13 28 28 H 1.09004 * 108.66250 * 144.33214 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6264 -2.5638 0.8856 11 6 0.3676 -2.5769 -1.2586 12 16 -0.7749 -3.9697 -1.0293 13 6 0.2909 -5.2524 -0.4527 14 6 -0.2093 -6.5579 -0.4419 15 9 -1.4668 -6.7966 -0.8745 16 6 0.5690 -7.6040 0.0069 17 6 1.8552 -7.3540 0.4517 18 6 2.3515 -6.0694 0.4379 19 6 1.5784 -5.0037 -0.0203 20 6 2.2360 -3.6549 -0.0232 21 1 -0.4850 0.8401 -0.0004 22 1 -0.1953 -1.6506 -1.3735 23 1 0.9873 -2.7468 -2.1391 24 1 0.1777 -8.6106 0.0114 25 1 2.4702 -8.1665 0.8096 26 1 3.3564 -5.8845 0.7876 27 1 2.8561 -3.5710 -0.9158 28 1 2.8794 -3.5786 0.8534 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259812189.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:08 Heat of formation + Delta-G solvation = -34.553563 kcal Electronic energy + Delta-G solvation = -14411.165125 eV Core-core repulsion = 11852.923711 eV Total energy + Delta-G solvation = -2558.241414 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.51410 -38.84656 -35.40013 -32.38942 -30.25061 -29.91486 -26.18979 -25.29994 -22.53832 -21.87598 -19.68746 -17.35639 -16.54043 -16.25998 -16.00938 -15.27690 -14.73949 -14.60896 -14.10141 -13.22829 -13.06245 -12.66947 -12.52115 -12.11638 -11.89558 -11.62673 -11.16526 -10.98364 -10.74544 -10.53582 -10.35962 -10.08255 -9.50214 -9.35407 -8.71322 -8.55265 -8.27503 -6.73250 -6.18813 -4.29003 1.41712 1.47174 2.34577 3.18692 3.28244 3.31130 3.35619 3.82308 4.28659 4.53733 4.99994 5.12095 5.16500 5.46267 5.53129 5.90260 6.04646 6.07640 6.26813 6.28627 6.43547 6.53029 6.63970 6.73664 6.90068 7.14688 7.34500 7.60496 7.77339 8.12217 8.75076 9.37794 10.86207 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.042084 B = 0.007464 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.174462 B = 3750.304072 C = 4323.824598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.047 3.953 10 H 0.044 0.956 11 C -0.077 4.077 12 S -0.154 6.154 13 C -0.101 4.101 14 C 0.103 3.897 15 F -0.135 7.135 16 C -0.154 4.154 17 C -0.107 4.107 18 C -0.124 4.124 19 C -0.045 4.045 20 C -0.082 4.082 21 H 0.265 0.735 22 H 0.141 0.859 23 H 0.062 0.938 24 H 0.132 0.868 25 H 0.127 0.873 26 H 0.125 0.875 27 H 0.072 0.928 28 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.830 -10.427 -0.444 10.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.027 3.973 10 H 0.062 0.938 11 C -0.225 4.225 12 S 0.092 5.908 13 C -0.215 4.215 14 C 0.078 3.922 15 F -0.114 7.114 16 C -0.175 4.175 17 C -0.129 4.129 18 C -0.145 4.145 19 C -0.052 4.052 20 C -0.119 4.119 21 H 0.075 0.925 22 H 0.158 0.842 23 H 0.081 0.919 24 H 0.150 0.850 25 H 0.145 0.855 26 H 0.143 0.857 27 H 0.090 0.910 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.356 -10.189 -0.739 10.306 hybrid contribution 1.490 0.809 0.154 1.702 sum 2.845 -9.381 -0.584 9.820 Atomic orbital electron populations 1.69838 1.05966 1.27001 1.49469 1.25026 0.94936 0.99469 0.94572 0.86443 0.80076 0.83228 0.77765 1.19631 1.20866 1.20830 1.21119 0.93074 0.89625 1.51453 0.91916 1.18732 0.92935 0.92317 0.93271 0.93776 1.24393 0.99165 0.96479 1.02420 1.85379 1.17446 1.07437 1.80514 1.21660 0.98344 0.95695 1.05767 1.17342 0.80643 0.92446 1.01778 1.91473 1.37678 1.94852 1.87377 1.20852 0.95318 0.97940 1.03343 1.20757 0.94847 0.96941 1.00317 1.21321 1.00010 0.92188 1.00937 1.19965 0.91888 0.97351 0.95979 1.20520 0.99352 0.89780 1.02288 0.92508 0.84154 0.91905 0.85024 0.85509 0.85708 0.91023 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.00 11.32 55.43 0.63 -23.37 15 2 C 0.06 1.63 5.25 -17.82 -0.09 1.53 15 3 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 15 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 15 7 C -0.51 -13.10 8.57 -34.44 -0.29 -13.40 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 15 9 C 0.05 1.12 2.01 -92.07 -0.19 0.94 15 10 H 0.04 1.17 8.03 -51.93 -0.42 0.76 15 11 C -0.08 -1.78 5.69 37.43 0.21 -1.56 15 12 S -0.15 -3.34 21.48 -107.50 -2.31 -5.65 15 13 C -0.10 -2.00 6.05 -39.05 -0.24 -2.24 15 14 C 0.10 1.86 7.24 -39.12 -0.28 1.58 15 15 F -0.14 -2.49 16.57 2.25 0.04 -2.45 15 16 C -0.15 -2.25 10.03 -39.66 -0.40 -2.65 15 17 C -0.11 -1.44 10.03 -39.72 -0.40 -1.84 15 18 C -0.12 -1.89 9.48 -39.34 -0.37 -2.26 15 19 C -0.05 -0.84 5.77 -104.56 -0.60 -1.45 15 20 C -0.08 -1.64 4.49 -28.77 -0.13 -1.77 15 21 H 0.26 6.86 8.31 -40.82 -0.34 6.52 15 22 H 0.14 3.59 5.89 -51.93 -0.31 3.29 15 23 H 0.06 1.38 8.08 -51.93 -0.42 0.96 15 24 H 0.13 1.54 8.06 -52.49 -0.42 1.11 15 25 H 0.13 1.25 8.06 -52.49 -0.42 0.83 15 26 H 0.12 1.59 8.01 -52.49 -0.42 1.17 15 27 H 0.07 1.38 8.14 -51.93 -0.42 0.96 15 28 H 0.07 1.41 8.02 -51.93 -0.42 1.00 15 LS Contribution 253.18 15.07 3.82 3.82 Total: -1.00 -26.99 253.18 -8.42 -35.42 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -2.79 Total: 0.27 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -2.78 Total: -23.12 kcal Atomic # 7 Polarization: -24.00 SS G_CDS: 0.63 Total: -23.37 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -2.31 Total: -5.65 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -26.99 -8.42 -35.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259812189.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.862 kcal (2) G-P(sol) polarization free energy of solvation -26.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds