Wall clock time and date at job start Mon Mar 30 2020 05:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08997 * 109.55002 * 299.51926 * 9 7 2 11 11 C 1.53527 * 109.55477 * 59.71757 * 9 7 2 12 12 S 1.81602 * 107.31792 * 192.38855 * 11 9 7 13 13 C 1.76458 * 102.63725 * 313.61789 * 12 11 9 14 14 C 1.39807 * 117.72016 * 193.33576 * 13 12 11 15 15 F 1.35104 * 119.70613 * 0.49411 * 14 13 12 16 16 C 1.37903 * 120.59278 * 180.52226 * 14 13 12 17 17 C 1.38368 * 119.48401 * 0.11660 * 16 14 13 18 18 C 1.37724 * 120.01776 * 359.67533 * 17 16 14 19 19 C 1.38076 * 122.31767 * 13.39456 * 13 12 11 20 20 C 1.50054 * 124.74691 * 358.07660 * 19 13 12 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.88903 * 311.84505 * 11 9 7 23 23 H 1.09002 * 109.88578 * 72.94045 * 11 9 7 24 24 H 1.07995 * 120.25933 * 180.09672 * 16 14 13 25 25 H 1.08000 * 119.99337 * 179.69776 * 17 16 14 26 26 H 1.08000 * 119.45192 * 179.97438 * 18 17 16 27 27 H 1.09002 * 108.66753 * 262.21790 * 20 19 13 28 28 H 1.09004 * 108.66250 * 144.33214 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6264 -2.5638 0.8856 11 6 0.3676 -2.5769 -1.2586 12 16 -0.7749 -3.9697 -1.0293 13 6 0.2909 -5.2524 -0.4527 14 6 -0.2093 -6.5579 -0.4419 15 9 -1.4668 -6.7966 -0.8745 16 6 0.5690 -7.6040 0.0069 17 6 1.8552 -7.3540 0.4517 18 6 2.3515 -6.0694 0.4379 19 6 1.5784 -5.0037 -0.0203 20 6 2.2360 -3.6549 -0.0232 21 1 -0.4850 0.8401 -0.0004 22 1 -0.1953 -1.6506 -1.3735 23 1 0.9873 -2.7468 -2.1391 24 1 0.1777 -8.6106 0.0114 25 1 2.4702 -8.1665 0.8096 26 1 3.3564 -5.8845 0.7876 27 1 2.8561 -3.5710 -0.9158 28 1 2.8794 -3.5786 0.8534 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259812189.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:08 Heat of formation + Delta-G solvation = -47.821495 kcal Electronic energy + Delta-G solvation = -14411.740466 eV Core-core repulsion = 11852.923711 eV Total energy + Delta-G solvation = -2558.816755 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.89197 -40.17710 -37.11372 -34.15371 -31.57457 -31.46649 -27.88921 -27.11293 -23.90269 -23.31143 -21.36639 -18.91140 -18.26144 -17.70433 -17.42555 -16.67726 -16.49869 -16.14559 -15.55134 -14.88427 -14.59246 -14.18360 -14.01276 -13.79147 -13.37518 -12.93969 -12.91471 -12.71123 -12.41060 -12.18046 -12.11317 -11.86058 -11.17280 -10.88333 -10.58629 -10.39260 -9.56769 -8.38566 -8.16108 -6.34330 0.13248 0.20222 0.75743 1.41036 1.44421 1.55353 1.63154 2.40371 2.57789 3.12124 3.23103 3.78404 3.98168 4.22193 4.28046 4.35066 4.47849 4.63421 4.74853 4.85226 5.00294 5.07606 5.11322 5.35560 5.44531 5.50708 5.67240 5.80696 5.93178 6.16747 6.76502 7.36181 8.87649 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.042084 B = 0.007464 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.174462 B = 3750.304072 C = 4323.824598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.962 3.038 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.527 4.527 8 H 0.068 0.932 9 C 0.048 3.952 10 H 0.004 0.996 11 C -0.066 4.066 12 S -0.188 6.188 13 C -0.128 4.128 14 C 0.082 3.918 15 F -0.145 7.145 16 C -0.140 4.140 17 C -0.085 4.085 18 C -0.119 4.119 19 C -0.067 4.067 20 C -0.074 4.074 21 H 0.264 0.736 22 H 0.111 0.889 23 H 0.066 0.934 24 H 0.168 0.832 25 H 0.178 0.822 26 H 0.155 0.845 27 H 0.076 0.924 28 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.048 -12.641 0.189 13.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.787 3.213 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.567 4.567 8 H 0.086 0.914 9 C 0.028 3.972 10 H 0.022 0.978 11 C -0.214 4.214 12 S 0.057 5.943 13 C -0.241 4.241 14 C 0.057 3.943 15 F -0.124 7.124 16 C -0.160 4.160 17 C -0.105 4.105 18 C -0.139 4.139 19 C -0.073 4.073 20 C -0.111 4.111 21 H 0.073 0.927 22 H 0.129 0.871 23 H 0.084 0.916 24 H 0.186 0.814 25 H 0.196 0.804 26 H 0.173 0.827 27 H 0.094 0.906 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.595 -12.428 -0.100 12.938 hybrid contribution 0.819 1.340 0.007 1.570 sum 4.414 -11.088 -0.092 11.935 Atomic orbital electron populations 1.69992 1.07457 1.27613 1.50438 1.25818 0.95616 1.02796 0.94292 0.85438 0.79267 0.79118 0.77452 1.18497 1.20757 1.20913 1.21480 0.93491 0.90628 1.51062 0.91354 1.18613 0.93199 0.93732 0.91688 0.97771 1.24045 0.99012 0.96085 1.02299 1.85274 1.18784 1.08354 1.81907 1.21701 0.98807 0.95383 1.08232 1.17696 0.80929 0.92652 1.03065 1.91446 1.38413 1.94819 1.87699 1.21350 0.95251 0.98434 1.00929 1.21344 0.94393 0.97402 0.97408 1.21662 1.00850 0.91902 0.99468 1.19970 0.91990 0.97744 0.97607 1.20346 0.98404 0.89361 1.03009 0.92664 0.87110 0.91579 0.81443 0.80447 0.82719 0.90561 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.67 11.32 21.45 0.24 -51.42 15 2 C 0.01 0.76 5.25 84.66 0.44 1.20 15 3 Si 0.96 41.71 29.54 68.60 2.03 43.73 15 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 15 5 H -0.28 -12.08 7.11 99.48 0.71 -11.38 15 6 H -0.28 -12.23 7.11 99.48 0.71 -11.53 15 7 C -0.53 -27.41 8.57 25.60 0.22 -27.19 15 8 H 0.07 3.39 7.74 -2.91 -0.02 3.37 15 9 C 0.05 2.34 2.01 -11.73 -0.02 2.31 15 10 H 0.00 0.23 8.03 -2.39 -0.02 0.21 15 11 C -0.07 -3.22 5.69 72.16 0.41 -2.81 15 12 S -0.19 -8.54 21.48 -56.49 -1.21 -9.75 15 13 C -0.13 -5.06 6.05 22.61 0.14 -4.92 15 14 C 0.08 2.81 7.24 22.57 0.16 2.97 15 15 F -0.15 -5.28 16.57 44.97 0.75 -4.53 15 16 C -0.14 -3.46 10.03 22.22 0.22 -3.23 15 17 C -0.09 -1.79 10.03 22.18 0.22 -1.57 15 18 C -0.12 -3.12 9.48 22.43 0.21 -2.91 15 19 C -0.07 -2.41 5.77 -19.83 -0.11 -2.52 15 20 C -0.07 -2.92 4.49 29.27 0.13 -2.79 15 21 H 0.26 14.19 8.31 -92.70 -0.77 13.42 15 22 H 0.11 6.04 5.89 -2.39 -0.01 6.03 15 23 H 0.07 3.05 8.08 -2.39 -0.02 3.03 15 24 H 0.17 2.96 8.06 -2.91 -0.02 2.93 15 25 H 0.18 2.07 8.06 -2.91 -0.02 2.05 15 26 H 0.16 3.13 8.01 -2.91 -0.02 3.11 15 27 H 0.08 2.88 8.14 -2.39 -0.02 2.86 15 28 H 0.09 3.13 8.02 -2.39 -0.02 3.11 15 Total: -1.00 -61.29 253.18 4.99 -56.29 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 1.17 Total: 7.15 kcal Atomic # 6 Polarization: -43.49 SS G_CDS: 2.03 Total: -41.46 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.24 Total: -51.42 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 0.75 Total: -4.53 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.21 Total: -9.75 kcal Total: -61.29 4.99 -56.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259812189.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.472 kcal (2) G-P(sol) polarization free energy of solvation -61.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds