Wall clock time and date at job start Mon Mar 30 2020 05:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99897 * 2 1 4 4 H 1.48495 * 109.46860 * 270.00045 * 3 2 1 5 5 H 1.48498 * 109.47259 * 30.00009 * 3 2 1 6 6 H 1.48498 * 109.46915 * 150.00175 * 3 2 1 7 7 C 1.37879 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00001 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99583 * 180.02562 * 7 2 1 10 10 H 1.08997 * 109.55910 * 59.79403 * 9 7 2 11 11 C 1.53542 * 109.64211 * 299.52659 * 9 7 2 12 12 S 1.81615 * 107.27431 * 167.43169 * 11 9 7 13 13 C 1.76464 * 102.60628 * 46.40469 * 12 11 9 14 14 C 1.39816 * 117.70355 * 167.19343 * 13 12 11 15 15 F 1.35096 * 119.70202 * 359.52732 * 14 13 12 16 16 C 1.37891 * 120.59567 * 179.54751 * 14 13 12 17 17 C 1.38371 * 119.47802 * 359.88240 * 16 14 13 18 18 C 1.37721 * 120.01955 * 0.28701 * 17 16 14 19 19 C 1.38068 * 122.32269 * 347.11182 * 13 12 11 20 20 C 1.50045 * 124.79520 * 0.90937 * 19 13 12 21 21 H 0.96999 * 120.00052 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.89654 * 286.87875 * 11 9 7 23 23 H 1.09009 * 109.89095 * 47.99235 * 11 9 7 24 24 H 1.08003 * 120.26323 * 179.86584 * 16 14 13 25 25 H 1.07997 * 119.99025 * 180.30428 * 17 16 14 26 26 H 1.08004 * 119.44246 * 180.02562 * 18 17 16 27 27 H 1.08999 * 108.65685 * 216.53469 * 20 19 13 28 28 H 1.08996 * 108.66203 * 98.65967 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8760 -0.6779 0.8882 11 6 4.0281 -0.4805 -1.2575 12 16 5.8034 -0.1823 -1.0175 13 6 6.3784 -1.7402 -0.4205 14 6 7.7597 -1.9535 -0.3861 15 9 8.5977 -0.9831 -0.8119 16 6 8.2745 -3.1455 0.0781 17 6 7.4120 -4.1354 0.5151 18 6 6.0509 -3.9287 0.4788 19 6 5.5166 -2.7311 0.0058 20 6 4.0199 -2.6252 -0.0007 21 1 -0.4850 0.8400 0.0004 22 1 3.8729 -1.1118 -2.1324 23 1 3.5067 0.4681 -1.3863 24 1 9.3424 -3.3054 0.1003 25 1 7.8064 -5.0703 0.8849 26 1 5.3863 -4.7075 0.8225 27 1 3.6305 -3.1339 0.8811 28 1 3.6383 -3.1302 -0.8880 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259812192.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:10 Heat of formation + Delta-G solvation = -41.959839 kcal Electronic energy + Delta-G solvation = -14504.089203 eV Core-core repulsion = 11945.526629 eV Total energy + Delta-G solvation = -2558.562574 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.93446 -40.26240 -37.29373 -34.31434 -32.05384 -31.57488 -28.08852 -27.20323 -24.03989 -23.27239 -21.33692 -19.16765 -18.68115 -17.75615 -17.54091 -16.72170 -16.63004 -16.34481 -15.66450 -15.07848 -14.58728 -14.47112 -14.25652 -14.18564 -13.52698 -13.31658 -12.97393 -12.72218 -12.43767 -12.30869 -11.90271 -11.83093 -11.31206 -11.01410 -10.82418 -10.57146 -9.60446 -8.51903 -8.39376 -6.44096 0.07427 0.16153 0.54360 1.19142 1.31003 1.33855 1.40626 2.22402 2.53691 2.94717 3.16875 3.69331 3.85566 4.00676 4.11578 4.16012 4.33096 4.45595 4.62024 4.62812 4.71118 4.99194 5.06478 5.22151 5.32832 5.37711 5.45429 5.52435 5.89194 6.17705 6.62930 7.21576 8.75904 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.037147 B = 0.008853 C = 0.007400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.571875 B = 3162.170140 C = 3782.711732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.029 3.971 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.245 1.245 7 C -0.511 4.511 8 H 0.053 0.947 9 C 0.018 3.982 10 H 0.031 0.969 11 C -0.092 4.092 12 S -0.172 6.172 13 C -0.128 4.128 14 C 0.088 3.912 15 F -0.143 7.143 16 C -0.139 4.139 17 C -0.081 4.081 18 C -0.118 4.118 19 C -0.062 4.062 20 C -0.068 4.068 21 H 0.269 0.731 22 H 0.094 0.906 23 H 0.084 0.916 24 H 0.169 0.831 25 H 0.178 0.822 26 H 0.155 0.845 27 H 0.090 0.910 28 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.733 -7.564 0.397 17.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.171 4.171 3 Si 0.742 3.258 4 H -0.192 1.192 5 H -0.216 1.216 6 H -0.169 1.169 7 C -0.551 4.551 8 H 0.071 0.929 9 C -0.002 4.002 10 H 0.049 0.951 11 C -0.240 4.240 12 S 0.072 5.928 13 C -0.242 4.242 14 C 0.063 3.937 15 F -0.122 7.122 16 C -0.159 4.159 17 C -0.101 4.101 18 C -0.138 4.138 19 C -0.068 4.068 20 C -0.105 4.105 21 H 0.078 0.922 22 H 0.112 0.888 23 H 0.102 0.898 24 H 0.186 0.814 25 H 0.195 0.805 26 H 0.172 0.828 27 H 0.108 0.892 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 16.154 -6.290 0.110 17.336 hybrid contribution -0.922 0.378 -0.082 0.999 sum 15.233 -5.912 0.028 16.340 Atomic orbital electron populations 1.69982 1.07767 1.28199 1.51490 1.25662 0.95240 1.02107 0.94043 0.86314 0.80173 0.80325 0.79016 1.19176 1.21618 1.16851 1.21128 0.89727 0.93702 1.50554 0.92857 1.19105 0.95040 0.94098 0.92001 0.95093 1.24509 0.90302 1.04672 1.04489 1.85272 1.10836 1.15120 1.81543 1.21552 0.95116 0.98710 1.08809 1.17637 0.85169 0.88183 1.02717 1.91457 1.70368 1.62505 1.87865 1.21367 1.02733 0.91056 1.00709 1.21365 0.91919 0.99778 0.97024 1.21661 0.96889 0.96009 0.99237 1.19890 0.95414 0.93986 0.97539 1.20187 0.89017 0.97599 1.03693 0.92179 0.88777 0.89782 0.81370 0.80487 0.82755 0.89199 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.22 13.96 21.45 0.30 -55.93 15 2 C 0.03 1.62 5.45 84.65 0.46 2.08 15 3 Si 0.92 43.77 24.46 68.60 1.68 45.44 15 4 H -0.27 -12.19 6.78 99.48 0.67 -11.52 15 5 H -0.29 -13.74 7.11 99.48 0.71 -13.04 15 6 H -0.24 -11.37 6.53 99.48 0.65 -10.72 15 7 C -0.51 -27.52 9.14 25.60 0.23 -27.29 15 8 H 0.05 3.09 7.99 -2.91 -0.02 3.07 15 9 C 0.02 0.80 1.58 -11.73 -0.02 0.78 15 10 H 0.03 1.48 7.08 -2.39 -0.02 1.46 15 11 C -0.09 -3.95 5.24 72.16 0.38 -3.57 15 12 S -0.17 -6.85 21.47 -56.49 -1.21 -8.06 15 13 C -0.13 -4.54 6.05 22.61 0.14 -4.40 15 14 C 0.09 2.69 7.24 22.57 0.16 2.85 15 15 F -0.14 -4.66 16.57 44.97 0.75 -3.92 15 16 C -0.14 -3.01 10.03 22.22 0.22 -2.79 15 17 C -0.08 -1.49 10.03 22.18 0.22 -1.27 15 18 C -0.12 -2.79 9.48 22.43 0.21 -2.58 15 19 C -0.06 -2.03 5.78 -19.83 -0.11 -2.14 15 20 C -0.07 -2.50 4.48 29.27 0.13 -2.37 15 21 H 0.27 15.22 8.31 -92.71 -0.77 14.45 15 22 H 0.09 3.82 8.08 -2.39 -0.02 3.81 15 23 H 0.08 3.83 3.43 -2.38 -0.01 3.82 15 24 H 0.17 2.52 8.06 -2.91 -0.02 2.49 15 25 H 0.18 1.70 8.06 -2.91 -0.02 1.68 15 26 H 0.15 2.84 8.02 -2.91 -0.02 2.81 15 27 H 0.09 3.12 8.02 -2.39 -0.02 3.10 15 28 H 0.08 2.85 8.14 -2.39 -0.02 2.83 15 Total: -1.00 -63.52 246.55 4.62 -58.90 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: 1.08 Total: 4.25 kcal Atomic # 6 Polarization: -42.72 SS G_CDS: 2.03 Total: -40.69 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.30 Total: -55.93 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.75 Total: -3.92 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.68 Total: 45.44 kcal Atomic # 16 Polarization: -6.85 SS G_CDS: -1.21 Total: -8.06 kcal Total: -63.52 4.62 -58.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259812192.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.941 kcal (2) G-P(sol) polarization free energy of solvation -63.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds