Wall clock time and date at job start Mon Mar 30 2020 05:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00396 * 2 1 4 4 H 1.48500 * 109.46997 * 239.99673 * 3 2 1 5 5 H 1.48496 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47297 * 119.99900 * 3 2 1 7 7 C 1.37880 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00426 * 185.06952 * 7 2 1 9 9 C 1.50705 * 119.99964 * 5.06687 * 7 2 1 10 10 H 1.08998 * 108.60930 * 24.86324 * 9 7 2 11 11 C 1.51870 * 108.65733 * 266.82905 * 9 7 2 12 12 C 1.53542 * 108.96417 * 178.63128 * 11 9 7 13 13 S 1.81621 * 107.27340 * 72.69649 * 12 11 9 14 14 C 1.76465 * 102.61154 * 313.58271 * 13 12 11 15 15 C 1.39611 * 117.68469 * 192.81279 * 14 13 12 16 16 C 1.37743 * 120.66939 * 180.47752 * 15 14 13 17 17 C 1.38521 * 119.48411 * 0.09026 * 16 15 14 18 18 F 1.35101 * 120.02747 * 179.71586 * 17 16 15 19 19 C 1.37938 * 119.95476 * 359.69546 * 17 16 15 20 20 C 1.38003 * 122.25609 * 13.01762 * 14 13 12 21 21 H 0.97000 * 119.99564 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.55598 * 298.48022 * 11 9 7 23 23 H 1.09004 * 109.55241 * 58.79129 * 11 9 7 24 24 H 1.08993 * 109.89681 * 192.13926 * 12 11 9 25 25 H 1.09001 * 109.89034 * 313.25912 * 12 11 9 26 26 H 1.07999 * 119.66073 * 0.49306 * 15 14 13 27 27 H 1.08002 * 120.26066 * 180.02562 * 16 15 14 28 28 H 1.07994 * 119.47999 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0813 -1.1960 0.0832 9 6 1.2553 -2.4967 -0.1142 10 1 0.3055 -2.3088 -0.6149 11 6 0.9726 -3.0193 1.2835 12 6 0.1792 -4.3294 1.1754 13 16 1.3277 -5.6087 0.5897 14 6 2.1526 -4.8034 -0.7464 15 6 2.9197 -5.5927 -1.6053 16 6 3.5974 -5.0265 -2.6624 17 6 3.5160 -3.6595 -2.8708 18 9 4.1810 -3.0919 -3.9008 19 6 2.7552 -2.8782 -2.0263 20 6 2.0623 -3.4421 -0.9545 21 1 -0.4849 0.8401 -0.0004 22 1 1.9139 -3.2044 1.8011 23 1 0.3887 -2.2838 1.8369 24 1 -0.2161 -4.6053 2.1529 25 1 -0.6378 -4.2105 0.4638 26 1 2.9820 -6.6580 -1.4393 27 1 4.1886 -5.6435 -3.3230 28 1 2.6968 -1.8133 -2.1961 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259837438.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:31 Heat of formation + Delta-G solvation = -49.452781 kcal Electronic energy + Delta-G solvation = -14578.239783 eV Core-core repulsion = 12019.352290 eV Total energy + Delta-G solvation = -2558.887493 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.82956 -40.20182 -36.88090 -34.10467 -32.03237 -31.16392 -28.97820 -25.54344 -23.91678 -23.65827 -21.37529 -18.69549 -18.46863 -17.96479 -17.26152 -16.56813 -16.53179 -16.12915 -15.09941 -14.77993 -14.62962 -14.44657 -14.08640 -13.71355 -13.57463 -13.50170 -12.87442 -12.64943 -12.40493 -12.29632 -11.81488 -11.54944 -11.20960 -10.95588 -10.57843 -10.31945 -9.71353 -8.27671 -8.17434 -6.31353 0.12343 0.36206 0.76903 1.38437 1.40037 1.46860 1.47158 2.36165 2.62623 3.07954 3.35772 3.87303 3.99768 4.10899 4.18030 4.31820 4.46156 4.56438 4.83627 4.96308 4.98437 5.09213 5.18495 5.24487 5.36411 5.50444 5.69649 5.82439 5.98487 6.21972 6.79455 7.34948 8.85837 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.020122 B = 0.011270 C = 0.007577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.189650 B = 2483.971727 C = 3694.448392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.022 3.978 3 Si 0.948 3.052 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.520 4.520 8 H 0.049 0.951 9 C 0.058 3.942 10 H 0.042 0.958 11 C -0.092 4.092 12 C -0.097 4.097 13 S -0.120 6.120 14 C -0.116 4.116 15 C -0.073 4.073 16 C -0.143 4.143 17 C 0.074 3.926 18 F -0.149 7.149 19 C -0.144 4.144 20 C -0.037 4.037 21 H 0.265 0.735 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.127 0.873 25 H 0.081 0.919 26 H 0.162 0.838 27 H 0.170 0.830 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.272 -10.015 -1.211 10.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.177 4.177 3 Si 0.773 3.227 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.558 4.558 8 H 0.067 0.933 9 C 0.039 3.961 10 H 0.060 0.940 11 C -0.131 4.131 12 C -0.245 4.245 13 S 0.121 5.879 14 C -0.228 4.228 15 C -0.096 4.096 16 C -0.163 4.163 17 C 0.052 3.948 18 F -0.128 7.128 19 C -0.165 4.165 20 C -0.042 4.042 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.145 0.855 25 H 0.100 0.900 26 H 0.180 0.820 27 H 0.187 0.813 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.184 -10.987 -0.714 11.461 hybrid contribution 0.162 2.853 -0.729 2.949 sum 3.346 -8.133 -1.443 8.912 Atomic orbital electron populations 1.69996 1.07089 1.27784 1.50719 1.25625 0.95577 1.02133 0.94415 0.85760 0.78588 0.79406 0.78933 1.19914 1.20736 1.19483 1.21142 0.92936 0.90836 1.50841 0.93259 1.17619 0.95097 0.91737 0.91600 0.94039 1.21506 0.98501 0.94257 0.98829 1.23882 0.98829 0.96475 1.05309 1.84655 1.45039 1.22330 1.35848 1.21646 1.04657 0.95101 1.01429 1.20997 0.95457 1.00481 0.92644 1.21174 1.02816 0.92054 1.00272 1.17811 0.96795 0.92682 0.87463 1.91436 1.78840 1.85804 1.56699 1.21444 0.98572 1.00708 0.95732 1.20243 0.96316 0.92269 0.95394 0.92582 0.92606 0.92125 0.85501 0.89998 0.82017 0.81274 0.86236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.24 12.81 21.45 0.27 -50.96 15 2 C 0.02 1.19 5.45 84.66 0.46 1.66 15 3 Si 0.95 42.67 29.54 68.60 2.03 44.70 15 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 15 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 15 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 15 7 C -0.52 -27.46 6.42 25.60 0.16 -27.30 15 8 H 0.05 2.64 7.73 -2.91 -0.02 2.62 15 9 C 0.06 2.79 2.01 -12.86 -0.03 2.76 15 10 H 0.04 2.27 7.31 -2.39 -0.02 2.25 15 11 C -0.09 -3.87 5.03 30.40 0.15 -3.72 15 12 C -0.10 -3.27 6.53 72.16 0.47 -2.80 15 13 S -0.12 -3.84 21.99 -56.49 -1.24 -5.09 15 14 C -0.12 -4.23 6.04 22.55 0.14 -4.09 15 15 C -0.07 -2.17 9.65 22.48 0.22 -1.95 15 16 C -0.14 -4.19 10.04 22.22 0.22 -3.96 15 17 C 0.07 2.69 7.28 22.27 0.16 2.85 15 18 F -0.15 -5.35 17.27 44.97 0.78 -4.57 15 19 C -0.14 -6.19 8.87 22.51 0.20 -5.99 15 20 C -0.04 -1.58 5.52 -19.81 -0.11 -1.69 15 21 H 0.27 14.15 8.31 -92.71 -0.77 13.38 15 22 H 0.06 2.35 8.03 -2.39 -0.02 2.33 15 23 H 0.06 2.76 8.14 -2.38 -0.02 2.74 15 24 H 0.13 3.51 8.14 -2.39 -0.02 3.49 15 25 H 0.08 2.85 8.08 -2.39 -0.02 2.83 15 26 H 0.16 3.67 8.05 -2.91 -0.02 3.65 15 27 H 0.17 3.59 8.06 -2.91 -0.02 3.57 15 28 H 0.12 5.69 6.87 -2.91 -0.02 5.67 15 Total: -1.00 -57.06 254.49 5.05 -52.00 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 1.17 Total: 8.16 kcal Atomic # 6 Polarization: -46.29 SS G_CDS: 2.05 Total: -44.24 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.27 Total: -50.96 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.78 Total: -4.57 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -1.24 Total: -5.09 kcal Total: -57.06 5.05 -52.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259837438.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.549 kcal (2) G-P(sol) polarization free energy of solvation -57.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds