Wall clock time and date at job start Mon Mar 30 2020 05:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00097 * 2 1 4 4 H 1.48496 * 109.47597 * 95.21265 * 3 2 1 5 5 H 1.48500 * 109.47300 * 215.21209 * 3 2 1 6 6 H 1.48500 * 109.47095 * 335.21040 * 3 2 1 7 7 C 1.37883 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99633 * 6.73424 * 7 2 1 9 9 C 1.50695 * 120.00369 * 186.73049 * 7 2 1 10 10 H 1.09001 * 108.61156 * 333.10932 * 9 7 2 11 11 C 1.51870 * 108.65410 * 91.01134 * 9 7 2 12 12 C 1.53551 * 108.96539 * 181.38226 * 11 9 7 13 13 S 1.81618 * 107.26698 * 287.31373 * 12 11 9 14 14 C 1.76464 * 102.61562 * 46.44489 * 13 12 11 15 15 C 1.39602 * 117.68748 * 167.23604 * 14 13 12 16 16 C 1.37759 * 120.66670 * 179.27627 * 15 14 13 17 17 C 1.38513 * 119.48239 * 0.02583 * 16 15 14 18 18 F 1.35097 * 120.02177 * 180.27575 * 17 16 15 19 19 C 1.37934 * 119.95439 * 0.26170 * 17 16 15 20 20 C 1.38155 * 122.29770 * 347.02258 * 14 13 12 21 21 H 0.96999 * 119.99936 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.56057 * 301.22958 * 11 9 7 23 23 H 1.09006 * 109.55374 * 61.53674 * 11 9 7 24 24 H 1.09002 * 109.88890 * 167.87582 * 12 11 9 25 25 H 1.08992 * 109.96381 * 46.78982 * 12 11 9 26 26 H 1.07993 * 119.66786 * 359.30710 * 15 14 13 27 27 H 1.08001 * 120.25547 * 180.02562 * 16 15 14 28 28 H 1.08004 * 119.47772 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6068 1.9829 1.3942 5 1 3.4873 1.4744 -0.8073 6 1 1.3958 2.6819 -0.5870 7 6 2.0046 -1.1941 0.0005 8 1 1.4701 -2.1262 -0.1087 9 6 3.5037 -1.1985 0.1535 10 1 3.8945 -0.2527 -0.2216 11 6 3.8410 -1.3090 1.6301 12 6 5.3672 -1.2793 1.7970 13 16 6.0048 -2.8753 1.2101 14 6 5.1513 -3.0926 -0.3190 15 6 5.6038 -4.0961 -1.1776 16 6 4.9736 -4.3288 -2.3803 17 6 3.8806 -3.5567 -2.7377 18 9 3.2509 -3.7792 -3.9121 19 6 3.4353 -2.5608 -1.8937 20 6 4.0677 -2.3139 -0.6767 21 1 -0.4850 0.8400 -0.0004 22 1 3.3987 -0.4712 2.1692 23 1 3.4490 -2.2465 2.0248 24 1 5.6227 -1.1413 2.8476 25 1 5.7907 -0.4695 1.2030 26 1 6.4562 -4.6963 -0.8959 27 1 5.3291 -5.1072 -3.0392 28 1 2.5826 -1.9631 -2.1803 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259837441.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:33 Heat of formation + Delta-G solvation = -47.383003 kcal Electronic energy + Delta-G solvation = -14624.780851 eV Core-core repulsion = 12065.983111 eV Total energy + Delta-G solvation = -2558.797741 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.85519 -40.29721 -36.99119 -34.27940 -32.12168 -31.21308 -29.44953 -25.25904 -23.99770 -23.67843 -21.35405 -19.30379 -18.45609 -18.01388 -17.37618 -16.57659 -16.42853 -16.20494 -15.13850 -14.82783 -14.68257 -14.50007 -14.44779 -14.00649 -13.65612 -13.58603 -12.86680 -12.71878 -12.44727 -12.04780 -11.80739 -11.77360 -11.27152 -10.91597 -10.80716 -10.37478 -9.75075 -8.33884 -8.24802 -6.38846 0.07839 0.30975 0.72279 1.30237 1.34125 1.41663 1.44116 2.28566 2.55835 2.98508 3.32745 3.79204 3.92698 3.99917 4.12267 4.23904 4.41810 4.43633 4.68831 4.82549 4.84647 4.97163 5.04792 5.20734 5.25403 5.30165 5.56962 5.67516 5.93445 6.23366 6.66308 7.24403 8.82482 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.020405 B = 0.011901 C = 0.008187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.872761 B = 2352.104123 C = 3419.395900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.020 3.980 3 Si 0.932 3.068 4 H -0.251 1.251 5 H -0.250 1.250 6 H -0.289 1.289 7 C -0.506 4.506 8 H 0.031 0.969 9 C 0.031 3.969 10 H 0.053 0.947 11 C -0.108 4.108 12 C -0.103 4.103 13 S -0.115 6.115 14 C -0.112 4.112 15 C -0.073 4.073 16 C -0.139 4.139 17 C 0.072 3.928 18 F -0.150 7.150 19 C -0.144 4.144 20 C -0.037 4.037 21 H 0.267 0.733 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.135 0.865 25 H 0.094 0.906 26 H 0.165 0.835 27 H 0.170 0.830 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.163 -4.107 0.394 14.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.178 4.178 3 Si 0.756 3.244 4 H -0.175 1.175 5 H -0.175 1.175 6 H -0.216 1.216 7 C -0.543 4.543 8 H 0.050 0.950 9 C 0.012 3.988 10 H 0.071 0.929 11 C -0.147 4.147 12 C -0.251 4.251 13 S 0.126 5.874 14 C -0.224 4.224 15 C -0.096 4.096 16 C -0.159 4.159 17 C 0.051 3.949 18 F -0.129 7.129 19 C -0.165 4.165 20 C -0.043 4.043 21 H 0.077 0.923 22 H 0.090 0.910 23 H 0.080 0.920 24 H 0.153 0.847 25 H 0.112 0.888 26 H 0.182 0.818 27 H 0.188 0.812 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 14.812 -4.648 1.008 15.557 hybrid contribution -1.804 1.622 -1.066 2.650 sum 13.008 -3.025 -0.058 13.355 Atomic orbital electron populations 1.70039 1.08216 1.28215 1.51785 1.25862 0.95372 1.02620 0.93996 0.85939 0.79182 0.79008 0.80309 1.17497 1.17452 1.21566 1.20944 0.90326 0.93173 1.49903 0.95044 1.18084 0.94843 0.93432 0.92426 0.92925 1.21759 0.92868 1.02762 0.97290 1.23975 0.98512 0.96308 1.06282 1.84791 1.54824 1.28584 1.19198 1.21678 0.99317 1.01322 1.00080 1.21019 1.00175 0.96371 0.92012 1.21211 0.95034 1.01123 0.98571 1.17827 0.95322 0.98858 0.82882 1.91438 1.81877 1.94177 1.45361 1.21426 1.01140 0.98826 0.95062 1.19917 0.92658 0.97113 0.94612 0.92345 0.90956 0.92028 0.84676 0.88777 0.81765 0.81206 0.86527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.17 13.96 21.45 0.30 -56.87 15 2 C 0.02 1.09 5.47 84.66 0.46 1.55 15 3 Si 0.93 41.59 26.97 68.60 1.85 43.44 15 4 H -0.25 -10.31 7.11 99.48 0.71 -9.60 15 5 H -0.25 -10.50 6.34 99.48 0.63 -9.86 15 6 H -0.29 -13.04 7.11 99.48 0.71 -12.33 15 7 C -0.51 -27.55 6.99 25.60 0.18 -27.37 15 8 H 0.03 1.96 7.91 -2.91 -0.02 1.93 15 9 C 0.03 1.36 1.62 -12.87 -0.02 1.34 15 10 H 0.05 2.34 4.98 -2.39 -0.01 2.33 15 11 C -0.11 -4.05 4.99 30.41 0.15 -3.90 15 12 C -0.10 -2.93 6.53 72.17 0.47 -2.46 15 13 S -0.12 -3.35 21.99 -56.49 -1.24 -4.59 15 14 C -0.11 -3.83 6.05 22.58 0.14 -3.70 15 15 C -0.07 -2.06 9.65 22.49 0.22 -1.85 15 16 C -0.14 -3.98 10.04 22.22 0.22 -3.76 15 17 C 0.07 2.64 7.28 22.26 0.16 2.80 15 18 F -0.15 -5.48 17.27 44.97 0.78 -4.71 15 19 C -0.14 -6.17 8.83 22.47 0.20 -5.97 15 20 C -0.04 -1.54 5.52 -19.82 -0.11 -1.65 15 21 H 0.27 15.20 8.31 -92.71 -0.77 14.43 15 22 H 0.07 2.73 7.80 -2.39 -0.02 2.71 15 23 H 0.06 2.44 8.03 -2.38 -0.02 2.42 15 24 H 0.14 2.99 8.14 -2.39 -0.02 2.97 15 25 H 0.09 2.56 8.08 -2.39 -0.02 2.54 15 26 H 0.16 3.47 8.05 -2.91 -0.02 3.44 15 27 H 0.17 3.52 8.06 -2.91 -0.02 3.49 15 28 H 0.12 5.69 6.87 -2.91 -0.02 5.67 15 Total: -1.00 -62.40 249.93 4.85 -57.55 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 1.10 Total: 10.15 kcal Atomic # 6 Polarization: -47.04 SS G_CDS: 2.07 Total: -44.97 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.30 Total: -56.87 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.78 Total: -4.71 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.85 Total: 43.44 kcal Atomic # 16 Polarization: -3.35 SS G_CDS: -1.24 Total: -4.59 kcal Total: -62.40 4.85 -57.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259837441.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.167 kcal (2) G-P(sol) polarization free energy of solvation -62.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds