Wall clock time and date at job start Mon Mar 30 2020 05:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47270 * 88.05024 * 3 2 1 5 5 H 1.48507 * 109.47147 * 208.05440 * 3 2 1 6 6 H 1.48500 * 109.47045 * 328.05026 * 3 2 1 7 7 C 1.37879 * 119.99667 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00331 * 357.97443 * 7 2 1 9 9 C 1.50700 * 119.99645 * 177.97955 * 7 2 1 10 10 H 1.08998 * 108.62161 * 26.78123 * 9 7 2 11 11 C 1.51879 * 108.66384 * 268.85893 * 9 7 2 12 12 C 1.53527 * 108.96079 * 178.39121 * 11 9 7 13 13 S 1.81604 * 107.31177 * 72.55658 * 12 11 9 14 14 C 1.76456 * 102.63630 * 313.60399 * 13 12 11 15 15 C 1.39809 * 117.71206 * 192.64842 * 14 13 12 16 16 F 1.35101 * 119.70979 * 1.43484 * 15 14 13 17 17 C 1.37902 * 120.58662 * 181.43742 * 15 14 13 18 18 C 1.38366 * 119.48350 * 359.94310 * 17 15 14 19 19 C 1.37724 * 120.01871 * 359.63832 * 18 17 15 20 20 C 1.38070 * 122.31094 * 13.36810 * 14 13 12 21 21 H 0.96993 * 119.99673 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.55375 * 298.23609 * 11 9 7 23 23 H 1.09002 * 109.55567 * 58.54251 * 11 9 7 24 24 H 1.08996 * 109.88841 * 313.09907 * 12 11 9 25 25 H 1.09005 * 109.94547 * 192.04118 * 12 11 9 26 26 H 1.08003 * 120.25828 * 179.97438 * 17 15 14 27 27 H 1.07998 * 119.99007 * 179.61879 * 18 17 15 28 28 H 1.08002 * 119.44480 * 180.12933 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4555 2.0702 1.3992 5 1 3.5668 1.4286 -0.6585 6 1 1.4679 2.6404 -0.7409 7 6 2.0046 -1.1941 0.0005 8 1 1.4651 -2.1290 0.0340 9 6 3.5109 -1.1945 -0.0455 10 1 3.8727 -0.2642 0.3924 11 6 3.9527 -1.2493 -1.4975 12 6 5.4865 -1.2093 -1.5541 13 16 6.0907 -2.8224 -0.9789 14 6 5.1316 -3.0972 0.4766 15 6 5.5270 -4.1316 1.3300 16 9 6.6279 -4.8578 1.0367 17 6 4.8032 -4.4174 2.4685 18 6 3.6772 -3.6700 2.7651 19 6 3.2909 -2.6451 1.9302 20 6 4.0162 -2.3418 0.7789 21 1 -0.4849 0.8400 -0.0004 22 1 3.5948 -2.1725 -1.9532 23 1 3.5453 -0.3933 -2.0355 24 1 5.8610 -0.4194 -0.9032 25 1 5.8163 -1.0334 -2.5780 26 1 5.1132 -5.2179 3.1239 27 1 3.1008 -3.8907 3.6513 28 1 2.4116 -2.0663 2.1717 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259845144.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:59 Heat of formation + Delta-G solvation = -44.323700 kcal Electronic energy + Delta-G solvation = -14678.500555 eV Core-core repulsion = 12119.835476 eV Total energy + Delta-G solvation = -2558.665079 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.88683 -40.28787 -36.96411 -34.27442 -31.81361 -31.58276 -29.29314 -25.21763 -24.19489 -23.48193 -21.36558 -19.27476 -18.72633 -17.69633 -17.25405 -16.64842 -16.40028 -16.22714 -15.60223 -15.00466 -14.59064 -14.36913 -14.20169 -13.96722 -13.49225 -13.26893 -12.89797 -12.75228 -12.51475 -12.05805 -11.79955 -11.72686 -11.25554 -11.04784 -10.74702 -10.55892 -9.49767 -8.39425 -8.30446 -6.35725 0.13946 0.27506 0.61412 1.33647 1.37099 1.38780 1.45980 2.32175 2.62916 3.01443 3.24145 3.81391 3.96548 4.00312 4.18172 4.23731 4.42986 4.44068 4.64090 4.79355 4.84154 5.01119 5.10208 5.16662 5.32254 5.44178 5.57383 5.76042 5.98376 6.27329 6.69609 7.28137 8.85165 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.029158 B = 0.010137 C = 0.008126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.052123 B = 2761.453894 C = 3444.744393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.023 3.977 3 Si 0.928 3.072 4 H -0.271 1.271 5 H -0.234 1.234 6 H -0.287 1.287 7 C -0.503 4.503 8 H 0.037 0.963 9 C 0.039 3.961 10 H 0.050 0.950 11 C -0.110 4.110 12 C -0.098 4.098 13 S -0.133 6.133 14 C -0.140 4.140 15 C 0.087 3.913 16 F -0.139 7.139 17 C -0.142 4.142 18 C -0.094 4.094 19 C -0.113 4.113 20 C -0.041 4.041 21 H 0.267 0.733 22 H 0.059 0.941 23 H 0.075 0.925 24 H 0.093 0.907 25 H 0.134 0.866 26 H 0.169 0.831 27 H 0.163 0.837 28 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.258 -3.417 2.326 11.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.175 4.175 3 Si 0.752 3.248 4 H -0.197 1.197 5 H -0.157 1.157 6 H -0.213 1.213 7 C -0.541 4.541 8 H 0.055 0.945 9 C 0.020 3.980 10 H 0.068 0.932 11 C -0.149 4.149 12 C -0.246 4.246 13 S 0.108 5.892 14 C -0.253 4.253 15 C 0.063 3.937 16 F -0.118 7.118 17 C -0.162 4.162 18 C -0.114 4.114 19 C -0.133 4.133 20 C -0.047 4.047 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.094 0.906 24 H 0.111 0.889 25 H 0.152 0.848 26 H 0.186 0.814 27 H 0.180 0.820 28 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.035 -3.955 1.695 12.782 hybrid contribution -1.149 1.413 0.433 1.871 sum 10.887 -2.543 2.128 11.380 Atomic orbital electron populations 1.70024 1.08127 1.28141 1.51779 1.25802 0.95322 1.02428 0.93997 0.86018 0.80348 0.79285 0.79182 1.19666 1.15747 1.21315 1.20891 0.89369 0.93174 1.50642 0.94483 1.17983 0.95302 0.92670 0.92065 0.93184 1.21806 0.92056 1.02688 0.98347 1.23969 0.99214 0.95257 1.06134 1.85064 1.50285 1.27739 1.26129 1.21582 1.01274 1.01840 1.00646 1.17480 0.86575 0.93178 0.96473 1.91450 1.50990 1.75855 1.93473 1.21248 0.96247 1.02634 0.96089 1.21284 0.95945 0.94084 1.00076 1.21671 0.99463 0.98226 0.93951 1.20003 0.91478 0.96698 0.96508 0.92372 0.92190 0.90634 0.88868 0.84771 0.81385 0.81970 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.34 13.96 21.45 0.30 -55.04 15 2 C 0.02 1.22 5.47 84.65 0.46 1.69 15 3 Si 0.93 40.42 26.50 68.60 1.82 42.23 15 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 5 H -0.23 -9.10 6.17 99.48 0.61 -8.49 15 6 H -0.29 -12.54 7.11 99.48 0.71 -11.84 15 7 C -0.50 -26.45 6.99 25.60 0.18 -26.27 15 8 H 0.04 2.21 7.90 -2.91 -0.02 2.19 15 9 C 0.04 1.68 1.56 -12.86 -0.02 1.66 15 10 H 0.05 2.17 5.30 -2.39 -0.01 2.16 15 11 C -0.11 -4.24 4.79 30.40 0.15 -4.09 15 12 C -0.10 -3.04 6.53 72.16 0.47 -2.57 15 13 S -0.13 -4.55 21.47 -56.49 -1.21 -5.76 15 14 C -0.14 -5.33 6.05 22.61 0.14 -5.19 15 15 C 0.09 3.00 7.24 22.57 0.16 3.16 15 16 F -0.14 -4.65 16.57 44.97 0.75 -3.91 15 17 C -0.14 -4.08 10.03 22.22 0.22 -3.86 15 18 C -0.09 -2.83 10.03 22.18 0.22 -2.61 15 19 C -0.11 -4.38 8.85 22.43 0.20 -4.18 15 20 C -0.04 -1.70 5.53 -19.83 -0.11 -1.80 15 21 H 0.27 14.76 8.31 -92.71 -0.77 13.99 15 22 H 0.06 2.44 8.03 -2.39 -0.02 2.42 15 23 H 0.08 2.88 7.24 -2.39 -0.02 2.86 15 24 H 0.09 2.77 8.07 -2.39 -0.02 2.75 15 25 H 0.13 3.32 8.14 -2.38 -0.02 3.30 15 26 H 0.17 3.52 8.06 -2.91 -0.02 3.50 15 27 H 0.16 3.69 8.06 -2.91 -0.02 3.66 15 28 H 0.12 5.31 6.84 -2.91 -0.02 5.29 15 Total: -1.00 -60.45 247.91 4.80 -55.65 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 1.08 Total: 10.90 kcal Atomic # 6 Polarization: -46.14 SS G_CDS: 2.07 Total: -44.07 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.30 Total: -55.04 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.75 Total: -3.91 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 1.82 Total: 42.23 kcal Atomic # 16 Polarization: -4.55 SS G_CDS: -1.21 Total: -5.76 kcal Total: -60.45 4.80 -55.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259845144.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.324 kcal (2) G-P(sol) polarization free energy of solvation -60.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds