Wall clock time and date at job start Mon Mar 30 2020 05:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00155 * 2 1 4 4 H 1.48499 * 109.47132 * 240.28394 * 3 2 1 5 5 H 1.48500 * 109.46835 * 0.27836 * 3 2 1 6 6 H 1.48493 * 109.47316 * 120.27805 * 3 2 1 7 7 C 1.37878 * 119.99909 * 180.28378 * 2 1 3 8 8 H 1.07996 * 120.00005 * 179.72028 * 7 2 1 9 9 C 1.50704 * 120.00270 * 359.71632 * 7 2 1 10 10 C 1.50705 * 115.54673 * 34.41765 * 9 7 2 11 11 C 1.38265 * 119.95053 * 245.51709 * 10 9 7 12 12 C 1.38134 * 120.06615 * 179.97438 * 11 10 9 13 13 C 1.38765 * 119.96721 * 0.02562 * 12 11 10 14 14 O 1.35904 * 120.04320 * 180.02562 * 13 12 11 15 15 C 1.38688 * 119.90437 * 0.02562 * 13 12 11 16 16 C 1.38282 * 119.93220 * 359.70565 * 15 13 12 17 17 Cl 1.73601 * 119.98624 * 180.29357 * 16 15 13 18 18 C 1.52997 * 117.50026 * 248.75447 * 9 7 2 19 19 C 1.52992 * 117.50329 * 180.09101 * 9 7 2 20 20 H 0.97000 * 120.00428 * 359.71940 * 1 2 3 21 21 H 1.08000 * 119.96682 * 359.97438 * 11 10 9 22 22 H 1.08001 * 120.01411 * 179.97438 * 12 11 10 23 23 H 0.96700 * 114.00208 * 90.00325 * 14 13 12 24 24 H 1.08005 * 120.03335 * 180.02562 * 15 13 12 25 25 H 1.08998 * 117.49732 * 359.97438 * 18 9 7 26 26 H 1.09003 * 117.49932 * 145.01810 * 18 9 7 27 27 H 1.08998 * 117.50607 * 214.98279 * 19 9 7 28 28 H 1.09006 * 117.49627 * 0.02562 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0977 1.6993 -1.2159 5 1 1.2842 2.7464 0.0068 6 1 3.1080 1.6934 1.2090 7 6 2.0045 -1.1941 -0.0059 8 1 3.0845 -1.1941 -0.0105 9 6 1.2510 -2.4992 -0.0059 10 6 -0.0486 -2.4994 -0.7689 11 6 -1.2442 -2.6701 -0.0958 12 6 -2.4369 -2.6701 -0.7927 13 6 -2.4350 -2.4991 -2.1697 14 8 -3.6076 -2.4984 -2.8568 15 6 -1.2349 -2.3291 -2.8437 16 6 -0.0438 -2.3241 -2.1414 17 17 1.4587 -2.1037 -2.9827 18 6 1.3291 -3.3601 1.2565 19 6 2.0730 -3.7896 -0.0105 20 1 -0.4851 0.8400 0.0041 21 1 -1.2456 -2.8036 0.9760 22 1 -3.3702 -2.8040 -0.2661 23 1 -4.0099 -1.6237 -2.9473 24 1 -1.2311 -2.1954 -3.9155 25 1 1.9258 -2.9826 2.0869 26 1 0.4407 -3.9269 1.5349 27 1 1.6738 -4.6388 -0.5650 28 1 3.1589 -3.6945 -0.0131 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259863745.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:38 Heat of formation + Delta-G solvation = -17.238886 kcal Electronic energy + Delta-G solvation = -14906.238084 eV Core-core repulsion = 12334.330995 eV Total energy + Delta-G solvation = -2571.907089 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.62496 -38.64916 -37.11160 -36.25851 -34.07360 -31.46228 -30.09204 -27.53750 -23.95689 -23.68161 -22.50326 -21.04592 -19.24045 -18.59761 -16.72522 -16.53176 -16.46534 -16.00585 -15.44867 -14.91200 -14.57740 -14.08130 -13.60949 -13.26029 -13.07165 -12.82722 -12.75215 -12.29924 -12.05097 -11.89040 -11.53666 -11.38101 -11.33626 -10.94901 -10.63231 -10.17660 -9.51370 -9.05327 -7.89408 -6.05870 0.54586 0.61733 1.43072 1.45658 1.50331 1.60974 2.46556 2.90643 3.09935 3.53629 3.71535 4.11054 4.17660 4.33851 4.56655 4.63089 4.88542 4.97323 5.00335 5.06360 5.17115 5.23861 5.53357 5.57100 5.68760 5.80972 5.95267 6.06535 6.43271 6.87856 6.96167 7.52168 9.00678 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.021907 B = 0.011473 C = 0.010729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.795302 B = 2440.023076 C = 2609.205684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.041 3.959 3 Si 0.933 3.067 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.487 4.487 8 H 0.049 0.951 9 C 0.053 3.947 10 C 0.035 3.965 11 C -0.080 4.080 12 C -0.143 4.143 13 C 0.085 3.915 14 O -0.502 6.502 15 C -0.154 4.154 16 C -0.022 4.022 17 Cl -0.078 7.078 18 C -0.199 4.199 19 C -0.183 4.183 20 H 0.258 0.742 21 H 0.120 0.880 22 H 0.142 0.858 23 H 0.403 0.597 24 H 0.134 0.866 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.209 -3.338 -2.858 6.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.161 4.161 3 Si 0.760 3.240 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.525 4.525 8 H 0.067 0.933 9 C 0.052 3.948 10 C 0.033 3.967 11 C -0.099 4.099 12 C -0.162 4.162 13 C 0.040 3.960 14 O -0.314 6.314 15 C -0.173 4.173 16 C -0.049 4.049 17 Cl -0.049 7.049 18 C -0.237 4.237 19 C -0.220 4.220 20 H 0.067 0.933 21 H 0.138 0.862 22 H 0.159 0.841 23 H 0.261 0.739 24 H 0.152 0.848 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.141 -3.770 -2.980 6.343 hybrid contribution 0.630 1.669 0.041 1.785 sum -3.510 -2.101 -2.939 5.037 Atomic orbital electron populations 1.70017 1.06078 1.26436 1.49426 1.25358 0.95521 1.00786 0.94405 0.86001 0.78797 0.80782 0.78429 1.20479 1.21178 1.20017 1.20465 0.91785 0.89222 1.51005 0.93265 1.17813 0.91496 0.90421 0.95036 1.18995 0.95055 0.91879 0.90722 1.20667 0.91033 0.98836 0.99333 1.21434 0.98785 1.02645 0.93328 1.17990 0.84896 1.03281 0.89804 1.84732 1.34584 1.36232 1.75851 1.21174 0.90907 1.04750 1.00492 1.20456 0.86555 1.05378 0.92480 1.98286 1.33653 1.95677 1.77329 1.23112 1.01960 1.06109 0.92536 1.22856 0.98016 0.99098 1.02011 0.93265 0.86178 0.84068 0.73933 0.84799 0.90494 0.89821 0.90149 0.90160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.08 10.87 21.45 0.23 -45.85 15 2 C 0.04 2.13 5.37 84.65 0.45 2.59 15 3 Si 0.93 42.20 29.54 68.60 2.03 44.23 15 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 5 H -0.29 -12.79 7.11 99.48 0.71 -12.08 15 6 H -0.27 -12.22 7.11 99.48 0.71 -11.52 15 7 C -0.49 -25.11 7.97 25.60 0.20 -24.91 15 8 H 0.05 2.59 7.81 -2.91 -0.02 2.57 15 9 C 0.05 2.45 1.35 -53.67 -0.07 2.38 15 10 C 0.03 1.57 3.04 -19.83 -0.06 1.51 15 11 C -0.08 -3.30 8.56 22.25 0.19 -3.11 15 12 C -0.14 -5.17 9.99 22.37 0.22 -4.95 15 13 C 0.08 3.01 6.70 22.50 0.15 3.17 15 14 O -0.50 -14.62 13.50 -92.46 -1.25 -15.87 15 15 C -0.15 -5.93 9.77 22.39 0.22 -5.71 15 16 C -0.02 -0.95 6.26 22.31 0.14 -0.81 15 17 Cl -0.08 -3.31 27.12 -2.72 -0.07 -3.39 15 18 C -0.20 -8.32 9.43 30.62 0.29 -8.03 15 19 C -0.18 -7.51 9.94 30.62 0.30 -7.21 15 20 H 0.26 13.20 8.31 -92.71 -0.77 12.43 15 21 H 0.12 4.81 7.01 -2.91 -0.02 4.79 15 22 H 0.14 4.25 8.06 -2.91 -0.02 4.23 15 23 H 0.40 7.93 9.06 -74.06 -0.67 7.26 15 24 H 0.13 4.63 8.06 -2.91 -0.02 4.60 15 25 H 0.08 3.23 8.14 -2.39 -0.02 3.21 15 26 H 0.08 3.19 7.13 -2.39 -0.02 3.17 15 27 H 0.08 3.09 8.14 -2.39 -0.02 3.07 15 28 H 0.08 3.25 8.14 -2.38 -0.02 3.23 15 Total: -1.00 -56.47 260.60 3.49 -52.97 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.51 Total: 12.99 kcal Atomic # 6 Polarization: -47.13 SS G_CDS: 2.04 Total: -45.08 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.23 Total: -45.85 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -1.25 Total: -15.87 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 17 Polarization: -3.31 SS G_CDS: -0.07 Total: -3.39 kcal Total: -56.47 3.49 -52.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259863745.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.735 kcal (2) G-P(sol) polarization free energy of solvation -56.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds