Wall clock time and date at job start Mon Mar 30 2020 05:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00421 * 2 1 4 4 H 1.48498 * 109.47111 * 265.13792 * 3 2 1 5 5 H 1.48502 * 109.47109 * 25.13301 * 3 2 1 6 6 H 1.48494 * 109.47537 * 145.13624 * 3 2 1 7 7 C 1.37879 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00107 * 349.93947 * 7 2 1 9 9 C 1.50696 * 120.00045 * 169.93763 * 7 2 1 10 10 C 1.50700 * 115.55156 * 88.79830 * 9 7 2 11 11 C 1.38274 * 119.96522 * 234.70427 * 10 9 7 12 12 C 1.38247 * 120.12277 * 180.25196 * 11 10 9 13 13 C 1.38262 * 120.03640 * 359.45665 * 12 11 10 14 14 Cl 1.73597 * 120.03427 * 180.27279 * 13 12 11 15 15 C 1.38807 * 119.92521 * 0.54604 * 13 12 11 16 16 O 1.35929 * 120.06111 * 179.75329 * 15 13 12 17 17 C 1.38152 * 119.95777 * 54.68743 * 10 9 7 18 18 C 1.53003 * 117.49900 * 234.47264 * 9 7 2 19 19 C 1.53005 * 117.49672 * 303.13113 * 9 7 2 20 20 H 0.97002 * 119.99320 * 0.02562 * 1 2 3 21 21 H 1.08001 * 119.94041 * 359.97438 * 11 10 9 22 22 H 1.08000 * 119.97943 * 179.72534 * 12 11 10 23 23 H 0.96701 * 113.99508 * 269.97531 * 16 15 13 24 24 H 1.08000 * 120.02419 * 359.97438 * 17 10 9 25 25 H 1.08996 * 117.49880 * 214.99855 * 18 9 7 26 26 H 1.09000 * 117.49625 * 0.02562 * 18 9 7 27 27 H 1.08992 * 117.49924 * 359.97438 * 19 9 7 28 28 H 1.08998 * 117.49586 * 144.99911 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5996 1.9870 -1.3950 5 1 1.3991 2.6802 0.5946 6 1 3.4916 1.4719 0.8003 7 6 2.0045 -1.1941 0.0005 8 1 1.4769 -2.1222 0.1643 9 6 3.4941 -1.2043 -0.2275 10 6 4.3421 -1.0610 1.0100 11 6 5.2933 -0.0601 1.0833 12 6 6.0766 0.0711 2.2149 13 6 5.9025 -0.7919 3.2810 14 17 6.8813 -0.6227 4.7047 15 6 4.9483 -1.7974 3.2093 16 8 4.7783 -2.6506 4.2537 17 6 4.1679 -1.9296 2.0701 18 6 4.0305 -2.0917 -1.3526 19 6 4.0155 -0.5700 -1.5185 20 1 -0.4849 0.8401 -0.0004 21 1 5.4277 0.6177 0.2532 22 1 6.8219 0.8510 2.2679 23 1 5.3301 -3.4434 4.2077 24 1 3.4243 -2.7107 2.0122 25 1 4.9967 -2.5717 -1.1977 26 1 3.3059 -2.6677 -1.9281 27 1 3.2811 -0.1457 -2.2031 28 1 4.9718 -0.0491 -1.4728 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259865012.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:03 Heat of formation + Delta-G solvation = -0.657904 kcal Electronic energy + Delta-G solvation = -14590.964685 eV Core-core repulsion = 12019.776601 eV Total energy + Delta-G solvation = -2571.188084 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.59138 -37.42128 -36.26673 -35.34635 -32.18989 -30.24773 -29.10380 -25.92333 -22.71130 -22.68368 -21.27675 -19.56478 -17.70393 -16.51899 -16.38484 -15.40769 -15.05915 -14.56691 -14.31147 -13.44727 -12.94396 -12.75867 -12.63181 -12.14539 -11.59807 -11.42841 -11.20443 -11.02439 -10.68820 -10.56617 -10.39513 -9.96245 -9.79517 -9.47289 -8.77654 -8.64278 -8.36204 -7.84245 -6.20985 -4.24425 1.51986 1.66087 2.41948 3.26087 3.36535 3.41532 3.95623 4.36762 4.38622 4.81566 5.06222 5.23166 5.43619 5.57261 5.81572 5.90595 5.96402 6.08655 6.30537 6.33536 6.39028 6.55694 6.64886 6.89544 7.00995 7.08746 7.28473 7.61584 7.86131 8.37081 8.80975 9.41866 10.89771 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.029222 B = 0.008455 C = 0.008307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.944170 B = 3310.967588 C = 3369.781518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.084 3.916 3 Si 0.865 3.135 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.245 1.245 7 C -0.488 4.488 8 H 0.080 0.920 9 C 0.025 3.975 10 C 0.005 3.995 11 C -0.122 4.122 12 C -0.104 4.104 13 C -0.082 4.082 14 Cl -0.082 7.082 15 C 0.107 3.893 16 O -0.489 6.489 17 C -0.111 4.111 18 C -0.168 4.168 19 C -0.197 4.197 20 H 0.267 0.733 21 H 0.127 0.873 22 H 0.127 0.873 23 H 0.384 0.616 24 H 0.140 0.860 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.782 -1.924 3.303 13.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.120 4.120 3 Si 0.691 3.309 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.169 1.169 7 C -0.525 4.525 8 H 0.098 0.902 9 C 0.024 3.976 10 C 0.005 3.995 11 C -0.141 4.141 12 C -0.123 4.123 13 C -0.109 4.109 14 Cl -0.053 7.053 15 C 0.062 3.938 16 O -0.298 6.298 17 C -0.129 4.129 18 C -0.205 4.205 19 C -0.234 4.234 20 H 0.077 0.923 21 H 0.145 0.855 22 H 0.145 0.855 23 H 0.239 0.761 24 H 0.158 0.842 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.272 -1.375 3.631 12.872 hybrid contribution 0.693 0.747 0.049 1.020 sum 12.965 -0.628 3.680 13.492 Atomic orbital electron populations 1.69902 1.06498 1.27468 1.48647 1.24952 0.94527 0.99164 0.93332 0.87054 0.81449 0.83236 0.79112 1.19973 1.22030 1.16918 1.20147 0.86524 0.95075 1.50765 0.90157 1.18234 0.94560 1.01074 0.83722 1.19910 0.91383 0.91857 0.96378 1.21112 0.96045 0.99012 0.97885 1.20818 1.00485 0.98690 0.92281 1.21187 0.97797 1.01808 0.90066 1.98315 1.69852 1.97385 1.39756 1.18186 0.95354 0.92275 0.88031 1.84867 1.66887 1.34773 1.43237 1.21202 0.99390 1.01440 0.90917 1.22870 1.00791 0.92661 1.04150 1.23064 1.01300 0.95683 1.03326 0.92333 0.85524 0.85485 0.76098 0.84247 0.90766 0.89035 0.88969 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.96 55.43 0.77 -25.59 15 2 C 0.08 2.34 5.45 -17.82 -0.10 2.24 15 3 Si 0.86 20.73 25.44 -169.99 -4.32 16.41 15 4 H -0.27 -6.35 7.09 56.52 0.40 -5.95 15 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 15 6 H -0.25 -5.53 4.61 56.52 0.26 -5.26 15 7 C -0.49 -12.96 9.11 -34.44 -0.31 -13.28 15 8 H 0.08 2.32 8.06 -52.48 -0.42 1.90 15 9 C 0.03 0.55 1.11 -156.81 -0.17 0.37 15 10 C 0.01 0.11 4.65 -104.64 -0.49 -0.38 15 11 C -0.12 -2.23 7.36 -39.56 -0.29 -2.52 15 12 C -0.10 -1.71 9.83 -39.57 -0.39 -2.10 15 13 C -0.08 -1.36 6.33 -39.36 -0.25 -1.61 15 14 Cl -0.08 -1.20 28.50 -51.86 -1.48 -2.67 15 15 C 0.11 1.86 6.70 -39.20 -0.26 1.60 15 16 O -0.49 -7.50 12.96 -19.52 -0.25 -7.76 15 17 C -0.11 -2.13 9.39 -39.44 -0.37 -2.50 15 18 C -0.17 -3.17 9.94 -26.69 -0.27 -3.44 15 19 C -0.20 -3.89 7.36 -26.69 -0.20 -4.09 15 20 H 0.27 7.48 8.31 -40.82 -0.34 7.14 15 21 H 0.13 2.18 6.22 -52.49 -0.33 1.85 15 22 H 0.13 1.76 8.06 -52.49 -0.42 1.34 15 23 H 0.38 3.92 9.06 45.56 0.41 4.33 15 24 H 0.14 2.70 8.06 -52.49 -0.42 2.28 15 25 H 0.07 1.24 8.14 -51.93 -0.42 0.81 15 26 H 0.09 1.74 8.14 -51.93 -0.42 1.32 15 27 H 0.09 1.94 7.57 -51.93 -0.39 1.55 15 28 H 0.08 1.32 6.58 -51.93 -0.34 0.98 15 LS Contribution 255.11 15.07 3.84 3.84 Total: -1.00 -29.47 255.11 -6.57 -36.04 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -2.04 Total: 5.43 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: -3.10 Total: -25.71 kcal Atomic # 7 Polarization: -26.37 SS G_CDS: 0.77 Total: -25.59 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.25 Total: -7.76 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.32 Total: 16.41 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -1.48 Total: -2.67 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.47 -6.57 -36.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865012.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.387 kcal (2) G-P(sol) polarization free energy of solvation -29.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds