Wall clock time and date at job start Mon Mar 30 2020 05:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00421 * 2 1 4 4 H 1.48498 * 109.47111 * 265.13792 * 3 2 1 5 5 H 1.48502 * 109.47109 * 25.13301 * 3 2 1 6 6 H 1.48494 * 109.47537 * 145.13624 * 3 2 1 7 7 C 1.37879 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00107 * 349.93947 * 7 2 1 9 9 C 1.50696 * 120.00045 * 169.93763 * 7 2 1 10 10 C 1.50700 * 115.55156 * 88.79830 * 9 7 2 11 11 C 1.38274 * 119.96522 * 234.70427 * 10 9 7 12 12 C 1.38247 * 120.12277 * 180.25196 * 11 10 9 13 13 C 1.38262 * 120.03640 * 359.45665 * 12 11 10 14 14 Cl 1.73597 * 120.03427 * 180.27279 * 13 12 11 15 15 C 1.38807 * 119.92521 * 0.54604 * 13 12 11 16 16 O 1.35929 * 120.06111 * 179.75329 * 15 13 12 17 17 C 1.38152 * 119.95777 * 54.68743 * 10 9 7 18 18 C 1.53003 * 117.49900 * 234.47264 * 9 7 2 19 19 C 1.53005 * 117.49672 * 303.13113 * 9 7 2 20 20 H 0.97002 * 119.99320 * 0.02562 * 1 2 3 21 21 H 1.08001 * 119.94041 * 359.97438 * 11 10 9 22 22 H 1.08000 * 119.97943 * 179.72534 * 12 11 10 23 23 H 0.96701 * 113.99508 * 269.97531 * 16 15 13 24 24 H 1.08000 * 120.02419 * 359.97438 * 17 10 9 25 25 H 1.08996 * 117.49880 * 214.99855 * 18 9 7 26 26 H 1.09000 * 117.49625 * 0.02562 * 18 9 7 27 27 H 1.08992 * 117.49924 * 359.97438 * 19 9 7 28 28 H 1.08998 * 117.49586 * 144.99911 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5996 1.9870 -1.3950 5 1 1.3991 2.6802 0.5946 6 1 3.4916 1.4719 0.8003 7 6 2.0045 -1.1941 0.0005 8 1 1.4769 -2.1222 0.1643 9 6 3.4941 -1.2043 -0.2275 10 6 4.3421 -1.0610 1.0100 11 6 5.2933 -0.0601 1.0833 12 6 6.0766 0.0711 2.2149 13 6 5.9025 -0.7919 3.2810 14 17 6.8813 -0.6227 4.7047 15 6 4.9483 -1.7974 3.2093 16 8 4.7783 -2.6506 4.2537 17 6 4.1679 -1.9296 2.0701 18 6 4.0305 -2.0917 -1.3526 19 6 4.0155 -0.5700 -1.5185 20 1 -0.4849 0.8401 -0.0004 21 1 5.4277 0.6177 0.2532 22 1 6.8219 0.8510 2.2679 23 1 5.3301 -3.4434 4.2077 24 1 3.4243 -2.7107 2.0122 25 1 4.9967 -2.5717 -1.1977 26 1 3.3059 -2.6677 -1.9281 27 1 3.2811 -0.1457 -2.2031 28 1 4.9718 -0.0491 -1.4728 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259865012.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:03 Heat of formation + Delta-G solvation = -19.958539 kcal Electronic energy + Delta-G solvation = -14591.801623 eV Core-core repulsion = 12019.776601 eV Total energy + Delta-G solvation = -2572.025022 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.96671 -38.86882 -37.49008 -36.74591 -34.25429 -31.62201 -30.45641 -27.90922 -24.19764 -24.09391 -22.75931 -21.15077 -19.24048 -18.22620 -17.73906 -16.87973 -16.71819 -16.05327 -15.77747 -14.84482 -14.69856 -14.54466 -13.92656 -13.57434 -13.11992 -12.98094 -12.90042 -12.47724 -12.15556 -12.07546 -11.89095 -11.73522 -11.34965 -11.07248 -10.69343 -10.45992 -9.73693 -9.24717 -8.32043 -6.38867 0.16971 0.30349 1.16122 1.36530 1.43176 1.53603 2.38387 2.59834 3.03522 3.09062 3.30699 3.90081 3.94583 4.23511 4.36868 4.41566 4.52413 4.66282 4.85448 4.90411 4.97932 5.10766 5.21480 5.40499 5.48788 5.64187 5.74469 5.85468 6.27556 6.68609 6.77895 7.31086 8.82697 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.029222 B = 0.008455 C = 0.008307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.944170 B = 3310.967588 C = 3369.781518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.025 3.975 3 Si 0.922 3.078 4 H -0.257 1.257 5 H -0.307 1.307 6 H -0.218 1.218 7 C -0.485 4.485 8 H 0.033 0.967 9 C 0.000 4.000 10 C -0.010 4.010 11 C -0.129 4.129 12 C -0.093 4.093 13 C -0.086 4.086 14 Cl -0.060 7.060 15 C 0.113 3.887 16 O -0.496 6.496 17 C -0.133 4.133 18 C -0.154 4.154 19 C -0.186 4.186 20 H 0.265 0.735 21 H 0.143 0.857 22 H 0.160 0.840 23 H 0.407 0.593 24 H 0.121 0.879 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.216 -0.765 3.747 16.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.173 4.173 3 Si 0.746 3.254 4 H -0.182 1.182 5 H -0.234 1.234 6 H -0.140 1.140 7 C -0.523 4.523 8 H 0.051 0.949 9 C -0.001 4.001 10 C -0.010 4.010 11 C -0.147 4.147 12 C -0.111 4.111 13 C -0.113 4.113 14 Cl -0.032 7.032 15 C 0.067 3.933 16 O -0.309 6.309 17 C -0.151 4.151 18 C -0.191 4.191 19 C -0.223 4.223 20 H 0.074 0.926 21 H 0.160 0.840 22 H 0.177 0.823 23 H 0.266 0.734 24 H 0.139 0.861 25 H 0.123 0.877 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 15.750 -0.256 4.073 16.270 hybrid contribution -0.351 0.206 0.008 0.407 sum 15.399 -0.050 4.081 15.931 Atomic orbital electron populations 1.70063 1.08544 1.28164 1.51721 1.25819 0.95113 1.03028 0.93323 0.86152 0.80865 0.78148 0.80269 1.18168 1.23447 1.13999 1.20313 0.89603 0.93105 1.49234 0.94911 1.18059 0.92078 1.04335 0.85639 1.19698 0.92642 0.93301 0.95401 1.21260 0.95845 0.98482 0.99126 1.21139 1.00145 0.98696 0.91143 1.21321 0.97624 1.01313 0.91025 1.98326 1.69034 1.97264 1.38538 1.18143 0.94837 0.92760 0.87512 1.84801 1.67881 1.35807 1.42412 1.21163 1.00092 1.01713 0.92180 1.22906 1.01669 0.92619 1.01898 1.23103 1.02115 0.96286 1.00805 0.92599 0.83956 0.82253 0.73386 0.86094 0.87704 0.90098 0.90627 0.87159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.72 13.96 21.45 0.30 -58.42 15 2 C 0.03 1.45 5.45 84.65 0.46 1.91 15 3 Si 0.92 42.46 25.44 68.60 1.75 44.21 15 4 H -0.26 -11.05 7.09 99.48 0.71 -10.35 15 5 H -0.31 -14.71 7.11 99.48 0.71 -14.00 15 6 H -0.22 -8.95 4.61 99.48 0.46 -8.49 15 7 C -0.49 -26.71 9.11 25.60 0.23 -26.47 15 8 H 0.03 2.04 8.06 -2.91 -0.02 2.01 15 9 C 0.00 -0.01 1.11 -53.67 -0.06 -0.07 15 10 C -0.01 -0.37 4.65 -19.88 -0.09 -0.47 15 11 C -0.13 -4.19 7.36 22.28 0.16 -4.03 15 12 C -0.09 -2.63 9.83 22.28 0.22 -2.42 15 13 C -0.09 -2.56 6.33 22.41 0.14 -2.42 15 14 Cl -0.06 -1.55 28.50 -2.72 -0.08 -1.62 15 15 C 0.11 3.71 6.70 22.52 0.15 3.86 15 16 O -0.50 -14.30 12.96 -92.75 -1.20 -15.51 15 17 C -0.13 -5.02 9.39 22.36 0.21 -4.81 15 18 C -0.15 -5.60 9.94 30.62 0.30 -5.29 15 19 C -0.19 -6.90 7.36 30.62 0.23 -6.68 15 20 H 0.27 15.55 8.31 -92.71 -0.77 14.78 15 21 H 0.14 4.13 6.22 -2.91 -0.02 4.11 15 22 H 0.16 3.48 8.06 -2.91 -0.02 3.46 15 23 H 0.41 7.40 9.06 -74.06 -0.67 6.73 15 24 H 0.12 4.88 8.06 -2.91 -0.02 4.86 15 25 H 0.10 3.18 8.14 -2.39 -0.02 3.16 15 26 H 0.08 3.08 8.14 -2.39 -0.02 3.06 15 27 H 0.08 3.06 7.57 -2.39 -0.02 3.04 15 28 H 0.11 3.33 6.58 -2.39 -0.02 3.32 15 Total: -1.00 -65.53 255.11 2.99 -62.54 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.27 Total: 15.69 kcal Atomic # 6 Polarization: -48.85 SS G_CDS: 1.96 Total: -46.89 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.30 Total: -58.42 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -1.20 Total: -15.51 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.75 Total: 44.21 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.62 kcal Total: -65.53 2.99 -62.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865012.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.582 kcal (2) G-P(sol) polarization free energy of solvation -65.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds