Wall clock time and date at job start Mon Mar 30 2020 05:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00359 * 2 1 4 4 H 1.48503 * 109.47350 * 269.99880 * 3 2 1 5 5 H 1.48499 * 109.47407 * 29.99951 * 3 2 1 6 6 H 1.48498 * 109.47139 * 150.00033 * 3 2 1 7 7 C 1.37885 * 119.99418 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99384 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00124 * 359.97438 * 7 2 1 10 10 C 1.50695 * 109.46868 * 180.02562 * 9 7 2 11 11 N 1.29915 * 124.85411 * 90.00875 * 10 9 7 12 12 C 1.35928 * 108.71073 * 179.97438 * 11 10 9 13 13 C 1.39695 * 134.11394 * 179.97438 * 12 11 10 14 14 C 1.38350 * 118.10772 * 179.97438 * 13 12 11 15 15 Cl 1.73604 * 120.27984 * 180.02562 * 14 13 12 16 16 C 1.38669 * 119.43209 * 359.97438 * 14 13 12 17 17 N 1.31724 * 121.35894 * 359.97438 * 16 14 13 18 18 C 1.32233 * 121.64089 * 0.02562 * 17 16 14 19 19 O 1.34255 * 124.85598 * 269.96159 * 10 9 7 20 20 H 0.96997 * 119.99130 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46983 * 60.01059 * 9 7 2 22 22 H 1.08992 * 109.47576 * 300.00452 * 9 7 2 23 23 H 1.07999 * 120.94721 * 359.72147 * 13 12 11 24 24 H 1.08003 * 119.32232 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2301 -3.6447 -0.0005 11 7 2.7124 -4.2091 1.0656 12 6 3.5605 -5.2019 0.6876 13 6 4.3487 -6.1238 1.3807 14 6 5.1089 -7.0149 0.6445 15 17 6.1084 -8.1851 1.4480 16 6 5.0648 -6.9661 -0.7407 17 7 4.3128 -6.0881 -1.3721 18 6 3.5674 -5.2145 -0.7165 19 8 2.7281 -4.2284 -1.1022 20 1 -0.4849 0.8401 -0.0004 21 1 0.6240 -2.5568 -0.8904 22 1 0.6245 -2.5571 0.8895 23 1 4.3673 -6.1378 2.4604 24 1 5.6593 -7.6623 -1.3136 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259876028.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:33 Heat of formation + Delta-G solvation = 39.143660 kcal Electronic energy + Delta-G solvation = -13725.676015 eV Core-core repulsion = 11052.673513 eV Total energy + Delta-G solvation = -2673.002502 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.025 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.03876 -39.14953 -36.73428 -34.79589 -33.56414 -31.84070 -30.77698 -28.33882 -24.58203 -23.57615 -22.62813 -21.09825 -18.63880 -17.41323 -17.06205 -16.49576 -16.14827 -14.92380 -14.44977 -13.75018 -13.57549 -13.23384 -13.08783 -12.55093 -11.91234 -11.82130 -11.61312 -11.45108 -10.99829 -10.91000 -10.70658 -10.23602 -9.79476 -9.41762 -9.13641 -8.68604 -8.38640 -6.31951 -4.38663 0.65934 0.85499 1.75061 2.43125 2.80692 3.20699 3.27113 3.31920 3.57185 4.17646 4.27674 4.38168 4.53717 4.70605 5.05527 5.07576 5.54537 5.69275 5.91847 6.22517 6.50702 6.95482 7.02082 7.54577 7.60708 7.81413 8.03658 8.61430 9.26722 10.78202 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.051507 B = 0.005114 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.480283 B = 5474.313171 C = 5583.641755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.909 3.091 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.527 4.527 8 H 0.063 0.937 9 C 0.096 3.904 10 C 0.332 3.668 11 N -0.501 5.501 12 C 0.006 3.994 13 C -0.020 4.020 14 C -0.095 4.095 15 Cl -0.050 7.050 16 C 0.136 3.864 17 N -0.439 5.439 18 C 0.197 3.803 19 O -0.199 6.199 20 H 0.269 0.731 21 H 0.061 0.939 22 H 0.078 0.922 23 H 0.154 0.846 24 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.347 -12.640 1.138 15.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.566 4.566 8 H 0.081 0.919 9 C 0.059 3.941 10 C 0.124 3.876 11 N -0.230 5.230 12 C -0.109 4.109 13 C -0.048 4.048 14 C -0.125 4.125 15 Cl -0.021 7.021 16 C -0.029 4.029 17 N -0.155 5.155 18 C 0.017 3.983 19 O -0.088 6.088 20 H 0.079 0.921 21 H 0.079 0.921 22 H 0.095 0.905 23 H 0.172 0.828 24 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 8.024 -12.349 0.922 14.756 hybrid contribution 0.739 0.555 0.278 0.965 sum 8.763 -11.794 1.199 14.743 Atomic orbital electron populations 1.69919 1.06056 1.27800 1.48609 1.24932 0.95034 0.99514 0.94160 0.86311 0.79728 0.81977 0.78455 1.20212 1.20741 1.19600 1.20781 0.93326 0.88611 1.53891 0.91896 1.18448 0.89798 0.84267 1.01608 1.28495 0.91538 0.91827 0.75784 1.70878 1.13672 1.09469 1.28940 1.20623 0.99856 0.98003 0.92425 1.20507 0.92243 0.90856 1.01144 1.21635 1.00126 0.96870 0.93901 1.98371 1.67569 1.56567 1.79637 1.22558 0.95482 0.95254 0.89566 1.66367 1.06184 1.03184 1.39768 1.20428 0.95268 0.92389 0.90194 1.84645 1.48233 1.38330 1.37602 0.92124 0.92136 0.90458 0.82800 0.80420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.30 13.29 55.43 0.74 -23.57 14 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 14 3 Si 0.91 20.54 29.54 -169.99 -5.02 15.52 14 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 14 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 14 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 14 7 C -0.53 -14.03 9.09 -34.44 -0.31 -14.34 14 8 H 0.06 1.69 7.74 -52.49 -0.41 1.28 14 9 C 0.10 2.33 5.60 -29.04 -0.16 2.17 14 10 C 0.33 7.47 7.43 -13.09 -0.10 7.37 14 11 N -0.50 -10.90 11.34 -8.67 -0.10 -10.99 14 12 C 0.01 0.12 7.26 -84.68 -0.61 -0.49 14 13 C -0.02 -0.30 10.02 -39.00 -0.39 -0.69 14 14 C -0.09 -1.21 6.34 -39.38 -0.25 -1.46 14 15 Cl -0.05 -0.51 28.98 -51.86 -1.50 -2.01 14 16 C 0.14 1.77 10.96 -17.44 -0.19 1.58 14 17 N -0.44 -7.50 10.38 -12.97 -0.13 -7.64 14 18 C 0.20 3.88 8.60 -16.56 -0.14 3.74 14 19 O -0.20 -4.34 10.77 3.56 0.04 -4.30 14 20 H 0.27 6.94 8.31 -40.82 -0.34 6.60 14 21 H 0.06 1.46 8.14 -51.93 -0.42 1.04 14 22 H 0.08 1.91 8.14 -51.93 -0.42 1.48 14 23 H 0.15 1.96 8.06 -52.49 -0.42 1.54 14 24 H 0.18 1.61 8.06 -52.48 -0.42 1.19 14 LS Contribution 244.79 15.07 3.69 3.69 Total: -1.00 -28.15 244.79 -5.78 -33.94 By element: Atomic # 1 Polarization: -2.97 SS G_CDS: -1.23 Total: -4.21 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -2.26 Total: -0.43 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.50 Total: -42.20 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: 0.04 Total: -4.30 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -28.15 -5.78 -33.94 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259876028.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.079 kcal (2) G-P(sol) polarization free energy of solvation -28.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds