Wall clock time and date at job start Mon Mar 30 2020 05:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99810 * 2 1 4 4 H 1.48502 * 109.46988 * 264.43331 * 3 2 1 5 5 H 1.48498 * 109.46744 * 24.43263 * 3 2 1 6 6 H 1.48497 * 109.47188 * 144.43523 * 3 2 1 7 7 C 1.37873 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00198 * 351.79932 * 7 2 1 9 9 C 1.50708 * 119.99924 * 171.79511 * 7 2 1 10 10 C 1.50699 * 115.54979 * 295.16417 * 9 7 2 11 11 C 1.38719 * 120.01162 * 297.55833 * 10 9 7 12 12 O 1.35980 * 119.99547 * 359.97438 * 11 10 9 13 13 C 1.38655 * 120.01512 * 180.25554 * 11 10 9 14 14 C 1.38215 * 120.03708 * 359.44952 * 13 11 10 15 15 C 1.38587 * 120.02347 * 0.54582 * 14 13 11 16 16 O 1.36031 * 120.00763 * 179.74545 * 15 14 13 17 17 C 1.38268 * 120.01065 * 117.53858 * 10 9 7 18 18 F 1.35102 * 120.01943 * 0.03790 * 17 10 9 19 19 C 1.53005 * 117.51498 * 80.86150 * 9 7 2 20 20 C 1.52998 * 117.49587 * 149.49192 * 9 7 2 21 21 H 0.96995 * 120.00337 * 359.97438 * 1 2 3 22 22 H 0.96697 * 113.99531 * 90.72279 * 12 11 10 23 23 H 1.07998 * 119.98281 * 179.72346 * 13 11 10 24 24 H 1.08006 * 119.98926 * 180.27404 * 14 13 11 25 25 H 0.96695 * 114.00614 * 269.98385 * 16 15 14 26 26 H 1.08994 * 117.49863 * 214.96690 * 19 9 7 27 27 H 1.09003 * 117.49719 * 359.97438 * 19 9 7 28 28 H 1.09001 * 117.50239 * 359.97425 * 20 9 7 29 29 H 1.08994 * 117.49841 * 145.00108 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6142 1.9786 -1.3935 5 1 1.3926 2.6837 0.5791 6 1 3.4829 1.4771 0.8143 7 6 2.0045 -1.1940 0.0005 8 1 1.4729 -2.1244 0.1344 9 6 3.5000 -1.2007 -0.1857 10 6 3.9903 -0.7153 -1.5255 11 6 3.6396 -1.3974 -2.6814 12 8 2.8537 -2.5045 -2.6055 13 6 4.0950 -0.9540 -3.9137 14 6 4.8893 0.1744 -3.9925 15 6 5.2406 0.8571 -2.8388 16 8 6.0267 1.9646 -2.9163 17 6 4.7896 0.4102 -1.6031 18 9 5.1320 1.0750 -0.4779 19 6 4.3661 -0.8927 1.0374 20 6 4.2914 -2.3206 0.4928 21 1 -0.4850 0.8400 0.0004 22 1 1.9070 -2.3201 -2.6745 23 1 3.8253 -1.4880 -4.8128 24 1 5.2400 0.5217 -4.9532 25 1 6.9740 1.7795 -2.8586 26 1 5.2905 -0.3392 0.8731 27 1 3.8542 -0.6847 1.9770 28 1 3.7304 -3.0523 1.0743 29 1 5.1666 -2.7064 -0.0298 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259948432.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:51 Heat of formation + Delta-G solvation = -64.093214 kcal Electronic energy + Delta-G solvation = -17556.252148 eV Core-core repulsion = 14553.976927 eV Total energy + Delta-G solvation = -3002.275221 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.52825 -39.55986 -37.68955 -36.24867 -34.85753 -32.21849 -30.02884 -28.20453 -25.92428 -22.92132 -22.31442 -21.35921 -19.60187 -18.08389 -18.06667 -16.54411 -16.35040 -15.87762 -15.71115 -14.85139 -14.39036 -14.16455 -13.96347 -13.32074 -13.09478 -12.78683 -12.30958 -12.10227 -11.42858 -10.95861 -10.84425 -10.75576 -10.43648 -10.30070 -9.77019 -9.70898 -9.24548 -8.89377 -8.49025 -8.10722 -7.92322 -6.21054 -4.23886 1.38245 1.54595 3.33073 3.43058 3.56280 3.72599 4.21827 4.40773 4.64662 4.83898 4.93044 5.09833 5.26543 5.46217 5.58386 6.00041 6.07217 6.15662 6.28823 6.37620 6.43425 6.53194 6.59286 6.82828 6.96731 7.13328 7.18758 7.61999 7.76837 8.30219 8.40173 8.81413 9.42283 10.87544 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.021549 B = 0.014123 C = 0.012390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.076541 B = 1982.057511 C = 2259.270141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.084 3.916 3 Si 0.854 3.146 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.238 1.238 7 C -0.480 4.480 8 H 0.083 0.917 9 C 0.033 3.967 10 C -0.069 4.069 11 C 0.150 3.850 12 O -0.484 6.484 13 C -0.149 4.149 14 C -0.123 4.123 15 C 0.051 3.949 16 O -0.490 6.490 17 C 0.076 3.924 18 F -0.123 7.123 19 C -0.197 4.197 20 C -0.163 4.163 21 H 0.267 0.733 22 H 0.399 0.601 23 H 0.134 0.866 24 H 0.134 0.866 25 H 0.383 0.617 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.980 -0.392 -6.519 11.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.120 4.120 3 Si 0.681 3.319 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.161 1.161 7 C -0.517 4.517 8 H 0.101 0.899 9 C 0.032 3.968 10 C -0.071 4.071 11 C 0.104 3.896 12 O -0.295 6.295 13 C -0.168 4.168 14 C -0.142 4.142 15 C 0.005 3.995 16 O -0.299 6.299 17 C 0.056 3.944 18 F -0.102 7.102 19 C -0.234 4.234 20 C -0.200 4.200 21 H 0.076 0.924 22 H 0.258 0.742 23 H 0.152 0.848 24 H 0.152 0.848 25 H 0.238 0.762 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.792 -0.253 -6.451 11.729 hybrid contribution 0.348 1.228 0.143 1.284 sum 10.140 0.975 -6.308 11.982 Atomic orbital electron populations 1.69897 1.06322 1.27461 1.48899 1.24941 0.94527 0.99140 0.93420 0.87303 0.81129 0.83326 0.80148 1.20128 1.22208 1.16091 1.20195 0.86616 0.94754 1.50104 0.89875 1.17904 0.94329 0.99615 0.84967 1.20289 0.95215 0.93089 0.98462 1.17903 0.94379 0.87184 0.90113 1.84642 1.21671 1.27704 1.95520 1.21302 1.01031 0.96912 0.97577 1.20908 1.00724 0.95125 0.97409 1.18373 0.99708 0.90185 0.91211 1.84897 1.20569 1.28801 1.95590 1.17858 1.01129 0.93558 0.81895 1.91440 1.90428 1.79260 1.49037 1.23394 1.01895 0.97973 1.00139 1.22756 1.01217 0.91840 1.04226 0.92370 0.74219 0.84833 0.84778 0.76229 0.90001 0.89358 0.89338 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.96 55.43 0.77 -25.50 15 2 C 0.08 2.36 5.46 -17.82 -0.10 2.26 15 3 Si 0.85 22.20 23.61 -169.99 -4.01 18.19 15 4 H -0.28 -7.32 6.76 56.52 0.38 -6.94 15 5 H -0.30 -7.74 7.11 56.52 0.40 -7.34 15 6 H -0.24 -5.97 4.73 56.52 0.27 -5.71 15 7 C -0.48 -12.91 8.76 -34.44 -0.30 -13.21 15 8 H 0.08 2.40 8.06 -52.49 -0.42 1.98 15 9 C 0.03 0.77 0.69 -156.81 -0.11 0.66 15 10 C -0.07 -1.50 4.16 -104.43 -0.43 -1.94 15 11 C 0.15 2.94 6.60 -39.25 -0.26 2.68 15 12 O -0.48 -9.22 12.47 -19.68 -0.25 -9.46 15 13 C -0.15 -2.43 9.98 -39.44 -0.39 -2.82 15 14 C -0.12 -1.93 9.98 -39.46 -0.39 -2.33 15 15 C 0.05 0.92 6.71 -39.20 -0.26 0.65 15 16 O -0.49 -7.80 13.37 -19.84 -0.27 -8.07 15 17 C 0.08 1.60 5.31 -39.32 -0.21 1.39 15 18 F -0.12 -2.72 10.79 2.25 0.02 -2.69 15 19 C -0.20 -4.33 7.26 -26.72 -0.19 -4.52 15 20 C -0.16 -3.41 9.94 -26.73 -0.27 -3.68 15 21 H 0.27 7.52 8.31 -40.82 -0.34 7.18 15 22 H 0.40 6.89 9.06 45.56 0.41 7.31 15 23 H 0.13 1.75 8.06 -52.49 -0.42 1.33 15 24 H 0.13 1.65 8.06 -52.48 -0.42 1.23 15 25 H 0.38 3.92 9.06 45.56 0.41 4.33 15 26 H 0.08 1.73 5.95 -51.93 -0.31 1.42 15 27 H 0.09 1.98 8.14 -51.93 -0.42 1.56 15 28 H 0.09 1.81 8.14 -51.93 -0.42 1.39 15 29 H 0.07 1.37 8.14 -51.93 -0.42 0.95 15 LS Contribution 248.63 15.07 3.75 3.75 Total: -1.00 -31.76 248.63 -4.21 -35.97 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -1.31 Total: 8.67 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -2.92 Total: -20.85 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.77 Total: -25.50 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.51 Total: -17.53 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.02 Total: -2.69 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.01 Total: 18.19 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.76 -4.21 -35.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259948432.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.127 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds