Wall clock time and date at job start Mon Mar 30 2020 05:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99810 * 2 1 4 4 H 1.48502 * 109.46988 * 264.43331 * 3 2 1 5 5 H 1.48498 * 109.46744 * 24.43263 * 3 2 1 6 6 H 1.48497 * 109.47188 * 144.43523 * 3 2 1 7 7 C 1.37873 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00198 * 351.79932 * 7 2 1 9 9 C 1.50708 * 119.99924 * 171.79511 * 7 2 1 10 10 C 1.50699 * 115.54979 * 295.16417 * 9 7 2 11 11 C 1.38719 * 120.01162 * 297.55833 * 10 9 7 12 12 O 1.35980 * 119.99547 * 359.97438 * 11 10 9 13 13 C 1.38655 * 120.01512 * 180.25554 * 11 10 9 14 14 C 1.38215 * 120.03708 * 359.44952 * 13 11 10 15 15 C 1.38587 * 120.02347 * 0.54582 * 14 13 11 16 16 O 1.36031 * 120.00763 * 179.74545 * 15 14 13 17 17 C 1.38268 * 120.01065 * 117.53858 * 10 9 7 18 18 F 1.35102 * 120.01943 * 0.03790 * 17 10 9 19 19 C 1.53005 * 117.51498 * 80.86150 * 9 7 2 20 20 C 1.52998 * 117.49587 * 149.49192 * 9 7 2 21 21 H 0.96995 * 120.00337 * 359.97438 * 1 2 3 22 22 H 0.96697 * 113.99531 * 90.72279 * 12 11 10 23 23 H 1.07998 * 119.98281 * 179.72346 * 13 11 10 24 24 H 1.08006 * 119.98926 * 180.27404 * 14 13 11 25 25 H 0.96695 * 114.00614 * 269.98385 * 16 15 14 26 26 H 1.08994 * 117.49863 * 214.96690 * 19 9 7 27 27 H 1.09003 * 117.49719 * 359.97438 * 19 9 7 28 28 H 1.09001 * 117.50239 * 359.97425 * 20 9 7 29 29 H 1.08994 * 117.49841 * 145.00108 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6142 1.9786 -1.3935 5 1 1.3926 2.6837 0.5791 6 1 3.4829 1.4771 0.8143 7 6 2.0045 -1.1940 0.0005 8 1 1.4729 -2.1244 0.1344 9 6 3.5000 -1.2007 -0.1857 10 6 3.9903 -0.7153 -1.5255 11 6 3.6396 -1.3974 -2.6814 12 8 2.8537 -2.5045 -2.6055 13 6 4.0950 -0.9540 -3.9137 14 6 4.8893 0.1744 -3.9925 15 6 5.2406 0.8571 -2.8388 16 8 6.0267 1.9646 -2.9163 17 6 4.7896 0.4102 -1.6031 18 9 5.1320 1.0750 -0.4779 19 6 4.3661 -0.8927 1.0374 20 6 4.2914 -2.3206 0.4928 21 1 -0.4850 0.8400 0.0004 22 1 1.9070 -2.3201 -2.6745 23 1 3.8253 -1.4880 -4.8128 24 1 5.2400 0.5217 -4.9532 25 1 6.9740 1.7795 -2.8586 26 1 5.2905 -0.3392 0.8731 27 1 3.8542 -0.6847 1.9770 28 1 3.7304 -3.0523 1.0743 29 1 5.1666 -2.7064 -0.0298 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259948432.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:51 Heat of formation + Delta-G solvation = -89.205392 kcal Electronic energy + Delta-G solvation = -17557.341093 eV Core-core repulsion = 14553.976927 eV Total energy + Delta-G solvation = -3003.364166 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.09369 -40.98052 -39.06834 -37.89317 -36.22721 -34.34763 -31.46158 -29.59132 -27.95941 -24.42475 -23.81086 -22.98928 -21.29574 -19.67790 -19.44945 -18.33204 -17.81492 -17.56353 -17.20097 -16.40246 -16.15339 -15.65069 -15.48600 -15.00379 -14.74789 -14.50735 -13.94102 -13.51104 -13.17161 -12.85853 -12.56454 -12.40774 -12.11621 -11.78228 -11.73893 -11.32596 -11.08448 -10.82584 -10.44244 -9.60018 -9.34983 -8.38469 -6.41084 0.00102 0.14721 1.25246 1.32431 1.48338 2.28820 2.35617 2.80357 3.01585 3.26503 3.34172 3.54398 3.77684 4.03880 4.19262 4.34715 4.49030 4.67744 4.84353 4.87322 4.95565 5.01383 5.12758 5.19117 5.42440 5.54016 5.59997 5.69783 6.26049 6.64565 6.70460 6.89292 7.26523 8.73604 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.021549 B = 0.014123 C = 0.012390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.076541 B = 1982.057511 C = 2259.270141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.044 3.956 3 Si 0.903 3.097 4 H -0.281 1.281 5 H -0.303 1.303 6 H -0.229 1.229 7 C -0.467 4.467 8 H 0.051 0.949 9 C 0.013 3.987 10 C -0.096 4.096 11 C 0.128 3.872 12 O -0.491 6.491 13 C -0.133 4.133 14 C -0.107 4.107 15 C 0.055 3.945 16 O -0.496 6.496 17 C 0.044 3.956 18 F -0.137 7.137 19 C -0.195 4.195 20 C -0.148 4.148 21 H 0.266 0.734 22 H 0.402 0.598 23 H 0.171 0.829 24 H 0.178 0.822 25 H 0.410 0.590 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.050 -0.022 -8.539 14.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.156 4.156 3 Si 0.729 3.271 4 H -0.207 1.207 5 H -0.231 1.231 6 H -0.151 1.151 7 C -0.505 4.505 8 H 0.070 0.930 9 C 0.012 3.988 10 C -0.098 4.098 11 C 0.082 3.918 12 O -0.303 6.303 13 C -0.151 4.151 14 C -0.125 4.125 15 C 0.010 3.990 16 O -0.309 6.309 17 C 0.024 3.976 18 F -0.116 7.116 19 C -0.232 4.232 20 C -0.185 4.185 21 H 0.075 0.925 22 H 0.261 0.739 23 H 0.188 0.812 24 H 0.196 0.804 25 H 0.268 0.732 26 H 0.111 0.889 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.908 0.107 -8.467 14.611 hybrid contribution -0.212 1.055 0.697 1.282 sum 11.696 1.161 -7.770 14.090 Atomic orbital electron populations 1.69989 1.07498 1.27850 1.51651 1.25427 0.94848 1.01375 0.93927 0.86565 0.80239 0.80544 0.79712 1.20684 1.23086 1.15142 1.20272 0.88743 0.93131 1.48308 0.93044 1.17812 0.92383 1.01848 0.86764 1.20182 0.97308 0.94396 0.97932 1.18229 0.95075 0.87546 0.90928 1.84620 1.22003 1.28028 1.95665 1.21674 0.99304 0.96731 0.97397 1.21395 0.98904 0.93893 0.98340 1.18544 0.99500 0.90245 0.90730 1.84829 1.22537 1.28154 1.95370 1.18191 1.02701 0.93940 0.82725 1.91379 1.90696 1.79518 1.49966 1.23335 1.01855 0.99067 0.98946 1.22796 1.01272 0.91195 1.03256 0.92499 0.73904 0.81172 0.80422 0.73158 0.88851 0.90460 0.89455 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.44 13.96 21.45 0.30 -56.14 15 2 C 0.04 2.52 5.46 84.65 0.46 2.98 15 3 Si 0.90 46.51 23.61 68.60 1.62 48.13 15 4 H -0.28 -14.59 6.76 99.48 0.67 -13.92 15 5 H -0.30 -15.77 7.11 99.48 0.71 -15.07 15 6 H -0.23 -11.29 4.73 99.48 0.47 -10.82 15 7 C -0.47 -25.64 8.76 25.60 0.22 -25.42 15 8 H 0.05 3.08 8.06 -2.91 -0.02 3.06 15 9 C 0.01 0.60 0.69 -53.67 -0.04 0.56 15 10 C -0.10 -4.09 4.16 -19.74 -0.08 -4.17 15 11 C 0.13 4.75 6.60 22.48 0.15 4.90 15 12 O -0.49 -18.26 12.47 -93.32 -1.16 -19.43 15 13 C -0.13 -3.76 9.98 22.36 0.22 -3.54 15 14 C -0.11 -2.83 9.98 22.35 0.22 -2.61 15 15 C 0.06 1.81 6.71 22.52 0.15 1.96 15 16 O -0.50 -13.87 13.37 -93.91 -1.26 -15.12 15 17 C 0.04 1.78 5.31 22.44 0.12 1.90 15 18 F -0.14 -5.83 10.79 44.97 0.49 -5.35 15 19 C -0.19 -8.45 7.26 30.60 0.22 -8.23 15 20 C -0.15 -6.07 9.94 30.60 0.30 -5.76 15 21 H 0.27 15.40 8.31 -92.71 -0.77 14.63 15 22 H 0.40 13.93 9.06 -74.06 -0.67 13.26 15 23 H 0.17 3.54 8.06 -2.91 -0.02 3.52 15 24 H 0.18 3.17 8.06 -2.91 -0.02 3.15 15 25 H 0.41 6.68 9.06 -74.06 -0.67 6.01 15 26 H 0.09 3.83 5.95 -2.39 -0.01 3.82 15 27 H 0.08 3.47 8.14 -2.39 -0.02 3.45 15 28 H 0.09 3.54 8.14 -2.39 -0.02 3.52 15 29 H 0.09 3.38 8.14 -2.39 -0.02 3.36 15 Total: -1.00 -68.90 248.63 1.54 -67.36 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -0.41 Total: 17.97 kcal Atomic # 6 Polarization: -39.39 SS G_CDS: 1.96 Total: -37.43 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.30 Total: -56.14 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -2.42 Total: -34.55 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 0.49 Total: -5.35 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.62 Total: 48.13 kcal Total: -68.90 1.54 -67.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259948432.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.845 kcal (2) G-P(sol) polarization free energy of solvation -68.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds