Wall clock time and date at job start Mon Mar 30 2020 05:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00278 * 2 1 4 4 H 1.48499 * 109.47334 * 270.00265 * 3 2 1 5 5 H 1.48500 * 109.46987 * 30.00568 * 3 2 1 6 6 H 1.48501 * 109.47117 * 150.00053 * 3 2 1 7 7 C 1.37875 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00342 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99931 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.69196 * 59.44894 * 9 7 2 11 11 C 1.53394 * 109.72905 * 298.87275 * 9 7 2 12 12 O 1.42844 * 108.37516 * 175.60809 * 11 9 7 13 13 C 1.35840 * 117.84640 * 49.27858 * 12 11 9 14 14 C 1.39165 * 118.49710 * 162.78844 * 13 12 11 15 15 C 1.37976 * 120.24317 * 179.53614 * 14 13 12 16 16 C 1.38272 * 119.97030 * 0.02562 * 15 14 13 17 17 C 1.38221 * 119.97083 * 0.08862 * 16 15 14 18 18 Cl 1.73599 * 119.85740 * 180.02562 * 17 16 15 19 19 C 1.38345 * 121.79987 * 342.50863 * 13 12 11 20 20 C 1.50763 * 121.41045 * 0.79473 * 19 13 12 21 21 H 0.97002 * 119.99796 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.68709 * 295.33707 * 11 9 7 23 23 H 1.08996 * 109.68765 * 55.85653 * 11 9 7 24 24 H 1.07999 * 119.87626 * 359.55500 * 14 13 12 25 25 H 1.07997 * 120.01184 * 180.02562 * 15 14 13 26 26 H 1.08002 * 120.01095 * 180.11324 * 16 15 14 27 27 H 1.08992 * 109.43825 * 102.09045 * 20 19 13 28 28 H 1.09000 * 109.43625 * 221.96085 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8792 -0.6727 0.8827 11 6 4.0289 -0.4966 -1.2656 12 8 5.4532 -0.4215 -1.1876 13 6 6.1324 -1.5559 -0.8760 14 6 7.4968 -1.6078 -1.1447 15 6 8.2237 -2.7387 -0.8341 16 6 7.5960 -3.8256 -0.2541 17 6 6.2405 -3.7790 0.0123 18 17 5.4555 -5.1451 0.7412 19 6 5.5054 -2.6456 -0.2988 20 6 4.0274 -2.6353 -0.0016 21 1 -0.4850 0.8401 0.0004 22 1 3.7391 -1.0702 -2.1460 23 1 3.6107 0.5080 -1.3280 24 1 7.9886 -0.7598 -1.5978 25 1 9.2825 -2.7749 -1.0439 26 1 8.1647 -4.7105 -0.0090 27 1 3.5001 -3.2089 -0.7638 28 1 3.8508 -3.0841 0.9759 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259967888.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:20 Heat of formation + Delta-G solvation = -26.306426 kcal Electronic energy + Delta-G solvation = -14702.604781 eV Core-core repulsion = 12130.304493 eV Total energy + Delta-G solvation = -2572.300287 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.26684 -37.43843 -36.10635 -34.41098 -32.27711 -30.36052 -29.81887 -25.53761 -25.04010 -22.54609 -21.87289 -19.18194 -17.56760 -17.06168 -16.43359 -15.45254 -14.60981 -14.51443 -14.46072 -13.59892 -13.36496 -13.08341 -12.95708 -12.70162 -11.93441 -11.73321 -11.46852 -11.15033 -10.89230 -10.68843 -10.32737 -10.13995 -9.90913 -9.57664 -9.21761 -8.70442 -8.42639 -7.87304 -6.23516 -4.25560 1.33797 1.54526 2.34180 3.12973 3.27010 3.31229 3.73005 3.90538 4.25147 4.98161 5.02058 5.13653 5.19450 5.46062 5.67879 5.71769 5.87294 5.98773 6.13098 6.19699 6.32221 6.44137 6.47468 6.65253 6.82899 6.90997 7.17294 7.50608 7.86819 8.34858 8.80279 9.35864 10.88919 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.031945 B = 0.008772 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.295792 B = 3191.305375 C = 3951.404016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.074 3.926 3 Si 0.869 3.131 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.259 1.259 7 C -0.516 4.516 8 H 0.081 0.919 9 C -0.017 4.017 10 H 0.042 0.958 11 C 0.049 3.951 12 O -0.323 6.323 13 C 0.154 3.846 14 C -0.155 4.155 15 C -0.086 4.086 16 C -0.154 4.154 17 C -0.004 4.004 18 Cl -0.071 7.071 19 C -0.143 4.143 20 C -0.064 4.064 21 H 0.267 0.733 22 H 0.065 0.935 23 H 0.093 0.907 24 H 0.131 0.869 25 H 0.132 0.868 26 H 0.128 0.872 27 H 0.079 0.921 28 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.100 -5.195 -1.523 15.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.129 4.129 3 Si 0.698 3.302 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.184 1.184 7 C -0.554 4.554 8 H 0.099 0.901 9 C -0.036 4.036 10 H 0.060 0.940 11 C -0.024 4.024 12 O -0.237 6.237 13 C 0.107 3.893 14 C -0.174 4.174 15 C -0.104 4.104 16 C -0.173 4.173 17 C -0.030 4.030 18 Cl -0.042 7.042 19 C -0.144 4.144 20 C -0.101 4.101 21 H 0.077 0.923 22 H 0.083 0.917 23 H 0.110 0.890 24 H 0.149 0.851 25 H 0.150 0.850 26 H 0.146 0.854 27 H 0.097 0.903 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 13.900 -5.010 -1.492 14.851 hybrid contribution 0.063 0.720 0.053 0.725 sum 13.963 -4.290 -1.439 14.678 Atomic orbital electron populations 1.69870 1.06183 1.27266 1.49460 1.25027 0.94782 0.98925 0.94201 0.87108 0.80633 0.83956 0.78491 1.20026 1.21495 1.18356 1.20855 0.87532 0.94990 1.52026 0.90086 1.19810 0.98053 0.92166 0.93534 0.93950 1.23933 0.74600 1.02576 1.01309 1.85937 1.23140 1.30266 1.84331 1.18642 0.91394 0.85907 0.93353 1.20671 0.91884 0.99792 1.05069 1.20722 0.99480 0.92160 0.98087 1.20801 0.92524 1.00102 1.03897 1.20664 0.92725 0.89062 1.00595 1.98346 1.81221 1.43116 1.81529 1.20136 0.98822 0.93002 1.02463 1.20572 0.87406 0.99618 1.02534 0.92283 0.91654 0.88952 0.85129 0.85045 0.85370 0.90288 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.96 55.43 0.77 -25.51 15 2 C 0.07 2.05 5.45 -17.82 -0.10 1.95 15 3 Si 0.87 20.88 24.46 -169.99 -4.16 16.72 15 4 H -0.27 -6.30 6.83 56.52 0.39 -5.92 15 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 6 H -0.26 -6.11 6.53 56.52 0.37 -5.75 15 7 C -0.52 -13.95 9.12 -34.44 -0.31 -14.26 15 8 H 0.08 2.35 7.99 -52.48 -0.42 1.93 15 9 C -0.02 -0.39 1.89 -91.53 -0.17 -0.56 15 10 H 0.04 1.04 7.17 -51.93 -0.37 0.66 15 11 C 0.05 1.08 5.83 37.36 0.22 1.30 15 12 O -0.32 -6.61 10.27 -19.24 -0.20 -6.81 15 13 C 0.15 2.83 6.47 -39.20 -0.25 2.58 15 14 C -0.16 -2.32 9.94 -39.33 -0.39 -2.71 15 15 C -0.09 -1.09 10.04 -39.66 -0.40 -1.48 15 16 C -0.15 -2.08 9.82 -39.58 -0.39 -2.47 15 17 C 0.00 -0.06 6.31 -39.44 -0.25 -0.31 15 18 Cl -0.07 -1.07 27.40 -51.86 -1.42 -2.49 15 19 C -0.14 -2.64 5.75 -104.41 -0.60 -3.24 15 20 C -0.06 -1.31 4.48 -27.81 -0.12 -1.44 15 21 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 22 H 0.07 1.36 8.14 -51.93 -0.42 0.94 15 23 H 0.09 2.09 3.43 -51.93 -0.18 1.91 15 24 H 0.13 1.69 8.06 -52.49 -0.42 1.27 15 25 H 0.13 1.19 8.06 -52.49 -0.42 0.77 15 26 H 0.13 1.40 8.06 -52.49 -0.42 0.98 15 27 H 0.08 1.61 8.09 -51.93 -0.42 1.19 15 28 H 0.08 1.62 7.33 -51.93 -0.38 1.24 15 LS Contribution 246.30 15.07 3.71 3.71 Total: -1.00 -28.55 246.30 -6.71 -35.26 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -2.65 Total: -0.24 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -2.77 Total: -20.63 kcal Atomic # 7 Polarization: -26.29 SS G_CDS: 0.77 Total: -25.51 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.20 Total: -6.81 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.16 Total: 16.72 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.42 Total: -2.49 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.55 -6.71 -35.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259967888.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.949 kcal (2) G-P(sol) polarization free energy of solvation -28.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds