Wall clock time and date at job start Mon Mar 30 2020 05:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00278 * 2 1 4 4 H 1.48499 * 109.47334 * 270.00265 * 3 2 1 5 5 H 1.48500 * 109.46987 * 30.00568 * 3 2 1 6 6 H 1.48501 * 109.47117 * 150.00053 * 3 2 1 7 7 C 1.37875 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00342 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99931 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.69196 * 59.44894 * 9 7 2 11 11 C 1.53394 * 109.72905 * 298.87275 * 9 7 2 12 12 O 1.42844 * 108.37516 * 175.60809 * 11 9 7 13 13 C 1.35840 * 117.84640 * 49.27858 * 12 11 9 14 14 C 1.39165 * 118.49710 * 162.78844 * 13 12 11 15 15 C 1.37976 * 120.24317 * 179.53614 * 14 13 12 16 16 C 1.38272 * 119.97030 * 0.02562 * 15 14 13 17 17 C 1.38221 * 119.97083 * 0.08862 * 16 15 14 18 18 Cl 1.73599 * 119.85740 * 180.02562 * 17 16 15 19 19 C 1.38345 * 121.79987 * 342.50863 * 13 12 11 20 20 C 1.50763 * 121.41045 * 0.79473 * 19 13 12 21 21 H 0.97002 * 119.99796 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.68709 * 295.33707 * 11 9 7 23 23 H 1.08996 * 109.68765 * 55.85653 * 11 9 7 24 24 H 1.07999 * 119.87626 * 359.55500 * 14 13 12 25 25 H 1.07997 * 120.01184 * 180.02562 * 15 14 13 26 26 H 1.08002 * 120.01095 * 180.11324 * 16 15 14 27 27 H 1.08992 * 109.43825 * 102.09045 * 20 19 13 28 28 H 1.09000 * 109.43625 * 221.96085 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8792 -0.6727 0.8827 11 6 4.0289 -0.4966 -1.2656 12 8 5.4532 -0.4215 -1.1876 13 6 6.1324 -1.5559 -0.8760 14 6 7.4968 -1.6078 -1.1447 15 6 8.2237 -2.7387 -0.8341 16 6 7.5960 -3.8256 -0.2541 17 6 6.2405 -3.7790 0.0123 18 17 5.4555 -5.1451 0.7412 19 6 5.5054 -2.6456 -0.2988 20 6 4.0274 -2.6353 -0.0016 21 1 -0.4850 0.8401 0.0004 22 1 3.7391 -1.0702 -2.1460 23 1 3.6107 0.5080 -1.3280 24 1 7.9886 -0.7598 -1.5978 25 1 9.2825 -2.7749 -1.0439 26 1 8.1647 -4.7105 -0.0090 27 1 3.5001 -3.2089 -0.7638 28 1 3.8508 -3.0841 0.9759 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259967888.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:20 Heat of formation + Delta-G solvation = -43.553925 kcal Electronic energy + Delta-G solvation = -14703.352688 eV Core-core repulsion = 12130.304493 eV Total energy + Delta-G solvation = -2573.048195 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.67140 -38.76322 -37.32570 -36.17121 -34.15146 -31.89113 -31.08161 -27.25640 -26.73396 -23.97344 -23.25367 -20.80683 -19.24499 -18.73890 -17.94193 -16.79151 -16.33162 -15.98813 -15.83826 -15.11317 -14.93508 -14.74521 -14.57374 -14.26467 -13.24237 -13.12332 -13.10747 -12.69305 -12.35287 -12.15242 -11.93537 -11.83228 -11.64957 -11.31884 -11.18209 -10.76866 -9.65130 -9.18443 -8.39618 -6.46420 0.14941 0.33695 1.14738 1.22253 1.31361 1.40728 2.21219 2.33425 2.65318 2.92694 3.73619 3.81821 3.93984 4.10104 4.22559 4.33923 4.39215 4.52500 4.64994 4.67875 4.72732 5.16988 5.23630 5.27816 5.35596 5.37275 5.46750 5.74164 6.15220 6.41408 6.60949 7.18791 8.76508 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.031945 B = 0.008772 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.295792 B = 3191.305375 C = 3951.404016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.255 1.255 5 H -0.286 1.286 6 H -0.253 1.253 7 C -0.521 4.521 8 H 0.044 0.956 9 C -0.016 4.016 10 H 0.030 0.970 11 C 0.059 3.941 12 O -0.330 6.330 13 C 0.118 3.882 14 C -0.150 4.150 15 C -0.067 4.067 16 C -0.141 4.141 17 C -0.015 4.015 18 Cl -0.070 7.070 19 C -0.167 4.167 20 C -0.055 4.055 21 H 0.271 0.729 22 H 0.067 0.933 23 H 0.086 0.914 24 H 0.153 0.847 25 H 0.181 0.819 26 H 0.161 0.839 27 H 0.067 0.933 28 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.751 -5.131 -2.008 18.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.176 4.176 3 Si 0.755 3.245 4 H -0.180 1.180 5 H -0.213 1.213 6 H -0.177 1.177 7 C -0.559 4.559 8 H 0.063 0.937 9 C -0.035 4.035 10 H 0.048 0.952 11 C -0.015 4.015 12 O -0.244 6.244 13 C 0.072 3.928 14 C -0.168 4.168 15 C -0.084 4.084 16 C -0.160 4.160 17 C -0.042 4.042 18 Cl -0.041 7.041 19 C -0.169 4.169 20 C -0.092 4.092 21 H 0.080 0.920 22 H 0.085 0.915 23 H 0.104 0.896 24 H 0.171 0.829 25 H 0.198 0.802 26 H 0.178 0.822 27 H 0.086 0.914 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 17.573 -4.966 -1.980 18.368 hybrid contribution -0.979 0.531 0.227 1.136 sum 16.594 -4.435 -1.753 17.266 Atomic orbital electron populations 1.70003 1.07945 1.28416 1.51213 1.25802 0.95452 1.02562 0.93792 0.86123 0.79350 0.79434 0.79549 1.18008 1.21277 1.17708 1.21049 0.89743 0.93687 1.51434 0.93748 1.19691 0.95433 0.94352 0.94032 0.95157 1.23551 0.76116 1.01764 1.00117 1.85897 1.21648 1.31674 1.85204 1.19064 0.92828 0.85495 0.95384 1.21050 0.90251 1.01404 1.04128 1.21289 1.01451 0.90317 0.95374 1.21273 0.91286 1.01499 1.01944 1.20835 0.93845 0.88500 1.01014 1.98348 1.81505 1.42734 1.81503 1.19967 0.97435 0.94714 1.04779 1.20330 0.89584 0.97395 1.01936 0.92021 0.91482 0.89620 0.82920 0.80208 0.82154 0.91436 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.14 13.96 21.45 0.30 -56.84 15 2 C 0.02 1.31 5.45 84.65 0.46 1.77 15 3 Si 0.93 43.50 24.46 68.60 1.68 45.18 15 4 H -0.25 -11.08 6.83 99.48 0.68 -10.40 15 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 15 6 H -0.25 -11.49 6.53 99.48 0.65 -10.85 15 7 C -0.52 -29.39 9.12 25.60 0.23 -29.16 15 8 H 0.04 2.75 7.99 -2.91 -0.02 2.72 15 9 C -0.02 -0.76 1.89 -11.38 -0.02 -0.79 15 10 H 0.03 1.51 7.17 -2.39 -0.02 1.49 15 11 C 0.06 2.57 5.83 72.11 0.42 2.99 15 12 O -0.33 -13.13 10.27 -91.76 -0.94 -14.07 15 13 C 0.12 4.13 6.47 22.52 0.15 4.28 15 14 C -0.15 -3.87 9.94 22.43 0.22 -3.64 15 15 C -0.07 -1.31 10.04 22.22 0.22 -1.08 15 16 C -0.14 -3.17 9.82 22.27 0.22 -2.95 15 17 C -0.02 -0.46 6.31 22.36 0.14 -0.32 15 18 Cl -0.07 -2.02 27.40 -2.72 -0.07 -2.09 15 19 C -0.17 -6.05 5.75 -19.73 -0.11 -6.16 15 20 C -0.06 -2.32 4.48 29.89 0.13 -2.19 15 21 H 0.27 15.37 8.31 -92.71 -0.77 14.60 15 22 H 0.07 2.84 8.14 -2.39 -0.02 2.82 15 23 H 0.09 3.81 3.43 -2.39 -0.01 3.80 15 24 H 0.15 3.24 8.06 -2.91 -0.02 3.21 15 25 H 0.18 1.88 8.06 -2.91 -0.02 1.86 15 26 H 0.16 2.60 8.06 -2.91 -0.02 2.57 15 27 H 0.07 2.89 8.09 -2.39 -0.02 2.87 15 28 H 0.07 3.10 7.33 -2.39 -0.02 3.08 15 Total: -1.00 -63.87 246.30 4.12 -59.76 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 1.09 Total: 5.31 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: 2.07 Total: -37.25 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: 0.30 Total: -56.84 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.94 Total: -14.07 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.68 Total: 45.18 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.07 Total: -2.09 kcal Total: -63.87 4.12 -59.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259967888.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.203 kcal (2) G-P(sol) polarization free energy of solvation -63.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds