Wall clock time and date at job start Mon Mar 30 2020 05:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99778 * 2 1 4 4 H 1.48499 * 109.47019 * 270.27518 * 3 2 1 5 5 H 1.48503 * 109.47121 * 30.27435 * 3 2 1 6 6 H 1.48498 * 109.47082 * 150.27289 * 3 2 1 7 7 C 1.37876 * 120.00047 * 180.27293 * 2 1 3 8 8 H 1.07998 * 119.99901 * 188.22187 * 7 2 1 9 9 C 1.50699 * 119.99893 * 8.21923 * 7 2 1 10 10 C 1.50699 * 115.55018 * 35.47475 * 9 7 2 11 11 C 1.38181 * 120.01215 * 245.37433 * 10 9 7 12 12 C 1.38220 * 120.06878 * 179.97438 * 11 10 9 13 13 C 1.38405 * 120.09740 * 0.04028 * 12 11 10 14 14 Cl 1.73607 * 119.98591 * 179.97438 * 13 12 11 15 15 C 1.38242 * 120.02989 * 0.02562 * 13 12 11 16 16 C 1.38715 * 120.01856 * 65.09489 * 10 9 7 17 17 O 1.35899 * 120.05017 * 0.02562 * 16 10 9 18 18 C 1.53000 * 117.49899 * 249.79769 * 9 7 2 19 19 C 1.53001 * 117.49736 * 181.13711 * 9 7 2 20 20 H 0.97002 * 120.00176 * 4.69772 * 1 2 3 21 21 H 1.07999 * 119.96225 * 359.97223 * 11 10 9 22 22 H 1.08003 * 119.95191 * 180.02562 * 12 11 10 23 23 H 1.08000 * 120.02947 * 180.02562 * 15 13 12 24 24 H 0.96699 * 113.99947 * 94.95376 * 17 16 10 25 25 H 1.08995 * 117.49534 * 0.02562 * 18 9 7 26 26 H 1.09003 * 117.49900 * 145.02215 * 18 9 7 27 27 H 1.09000 * 117.50055 * 214.98006 * 19 9 7 28 28 H 1.08997 * 117.49732 * 0.02562 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4907 2.0498 -1.4001 5 1 1.4494 2.6511 0.7058 6 1 3.5495 1.4386 0.6942 7 6 2.0045 -1.1940 -0.0057 8 1 3.0762 -1.1994 0.1280 9 6 1.2626 -2.4915 -0.1984 10 6 0.0864 -2.4341 -1.1387 11 6 -1.1926 -2.6427 -0.6592 12 6 -2.2724 -2.5899 -1.5205 13 6 -2.0753 -2.3288 -2.8653 14 17 -3.4335 -2.2637 -3.9447 15 6 -0.7974 -2.1208 -3.3497 16 6 0.2865 -2.1662 -2.4850 17 8 1.5432 -1.9557 -2.9574 18 6 1.1609 -3.4325 1.0037 19 6 2.0806 -3.7842 -0.1684 20 1 -0.4850 0.8372 -0.0688 21 1 -1.3487 -2.8473 0.3897 22 1 -3.2713 -2.7528 -1.1436 23 1 -0.6436 -1.9166 -4.3990 24 1 1.9634 -2.7461 -3.3233 25 1 1.6303 -3.1128 1.9340 26 1 0.2433 -4.0103 1.1143 27 1 1.7677 -4.5932 -0.8284 28 1 3.1552 -3.6961 -0.0088 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260012981.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:39 Heat of formation + Delta-G solvation = -0.832124 kcal Electronic energy + Delta-G solvation = -14880.444344 eV Core-core repulsion = 12309.248705 eV Total energy + Delta-G solvation = -2571.195639 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.20561 -36.44662 -36.10151 -35.10811 -32.11297 -29.68364 -28.76523 -25.62973 -22.45486 -22.05733 -20.96381 -19.28196 -17.62322 -16.66537 -15.36142 -15.01133 -14.64796 -14.26760 -13.91545 -13.16781 -13.09733 -12.48375 -12.18873 -11.55591 -11.47410 -11.02228 -10.88057 -10.60844 -10.55209 -10.36103 -10.29362 -10.02700 -9.36150 -9.23377 -8.91221 -8.26861 -8.02370 -7.48776 -6.01082 -4.06885 2.03376 2.08318 2.68689 3.32165 3.39083 3.40622 4.39186 4.45392 4.93677 5.07108 5.49647 5.58094 5.74822 5.77111 6.15485 6.19291 6.48601 6.50999 6.55464 6.60569 6.73525 6.88100 6.91681 7.20249 7.31648 7.54137 7.58780 7.84595 8.31054 8.53869 8.87091 9.52524 10.99530 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.024548 B = 0.009792 C = 0.008511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.360353 B = 2858.794228 C = 3289.107314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.075 3.925 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.477 4.477 8 H 0.062 0.938 9 C 0.087 3.913 10 C 0.027 3.973 11 C -0.065 4.065 12 C -0.126 4.126 13 C -0.043 4.043 14 Cl -0.101 7.101 15 C -0.152 4.152 16 C 0.122 3.878 17 O -0.473 6.473 18 C -0.206 4.206 19 C -0.203 4.203 20 H 0.261 0.739 21 H 0.124 0.876 22 H 0.118 0.882 23 H 0.122 0.878 24 H 0.371 0.629 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.730 -6.028 -4.453 7.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.129 4.129 3 Si 0.719 3.281 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.514 4.514 8 H 0.080 0.920 9 C 0.087 3.913 10 C 0.026 3.974 11 C -0.083 4.083 12 C -0.145 4.145 13 C -0.069 4.069 14 Cl -0.073 7.073 15 C -0.172 4.172 16 C 0.077 3.923 17 O -0.280 6.280 18 C -0.244 4.244 19 C -0.240 4.240 20 H 0.072 0.928 21 H 0.141 0.859 22 H 0.136 0.864 23 H 0.140 0.860 24 H 0.224 0.776 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.118 -5.284 -4.296 7.490 hybrid contribution 0.303 0.619 -0.291 0.749 sum -2.815 -4.665 -4.587 7.122 Atomic orbital electron populations 1.69967 1.05730 1.26914 1.47862 1.24908 0.94844 0.99054 0.94092 0.86599 0.79836 0.83463 0.78227 1.20476 1.21396 1.19909 1.20332 0.92907 0.88354 1.49786 0.91960 1.17653 0.91747 0.89835 0.92069 1.19603 0.94612 0.90914 0.92318 1.20653 0.91048 0.97943 0.98667 1.20801 0.99307 1.03117 0.91232 1.20358 0.87126 1.08619 0.90791 1.98297 1.45966 1.97395 1.65619 1.21063 0.91123 1.05018 0.99973 1.17972 0.83900 0.99527 0.90903 1.84982 1.26253 1.35941 1.80871 1.23106 0.99808 1.07026 0.94452 1.22915 0.97255 1.00873 1.02978 0.92848 0.85858 0.86356 0.86026 0.77584 0.90047 0.91394 0.91466 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.89 11.18 55.43 0.62 -23.27 15 2 C 0.08 2.03 5.28 -17.82 -0.09 1.93 15 3 Si 0.89 21.34 29.55 -169.99 -5.02 16.32 15 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 6 H -0.27 -6.45 7.11 56.52 0.40 -6.04 15 7 C -0.48 -12.63 8.60 -34.44 -0.30 -12.93 15 8 H 0.06 1.66 7.83 -52.49 -0.41 1.25 15 9 C 0.09 2.05 1.59 -156.81 -0.25 1.80 15 10 C 0.03 0.60 3.31 -104.47 -0.35 0.26 15 11 C -0.06 -1.36 8.55 -39.61 -0.34 -1.70 15 12 C -0.13 -2.39 9.83 -39.53 -0.39 -2.78 15 13 C -0.04 -0.80 6.32 -39.52 -0.25 -1.05 15 14 Cl -0.10 -1.63 28.95 -51.86 -1.50 -3.14 15 15 C -0.15 -2.97 9.77 -39.40 -0.38 -3.35 15 16 C 0.12 2.62 6.62 -39.22 -0.26 2.36 15 17 O -0.47 -9.71 12.60 -19.42 -0.24 -9.95 15 18 C -0.21 -4.37 9.43 -26.69 -0.25 -4.62 15 19 C -0.20 -4.09 9.94 -26.69 -0.27 -4.36 15 20 H 0.26 7.07 8.32 -40.82 -0.34 6.73 15 21 H 0.12 2.54 7.01 -52.49 -0.37 2.17 15 22 H 0.12 1.96 8.06 -52.48 -0.42 1.54 15 23 H 0.12 2.13 8.06 -52.49 -0.42 1.71 15 24 H 0.37 5.54 9.06 45.56 0.41 5.95 15 25 H 0.08 1.75 8.14 -51.93 -0.42 1.33 15 26 H 0.07 1.33 7.13 -51.93 -0.37 0.96 15 27 H 0.07 1.22 8.14 -51.93 -0.42 0.80 15 28 H 0.08 1.58 8.14 -51.93 -0.42 1.16 15 LS Contribution 262.71 15.07 3.96 3.96 Total: -1.00 -28.53 262.71 -7.30 -35.83 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -1.98 Total: 4.69 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -3.12 Total: -24.44 kcal Atomic # 7 Polarization: -23.89 SS G_CDS: 0.62 Total: -23.27 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -0.24 Total: -9.95 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -1.50 Total: -3.14 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.53 -7.30 -35.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260012981.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.995 kcal (2) G-P(sol) polarization free energy of solvation -28.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds