Wall clock time and date at job start Mon Mar 30 2020 05:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00330 * 2 1 4 4 H 1.48498 * 109.47347 * 240.00162 * 3 2 1 5 5 H 1.48493 * 109.46909 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46670 * 119.99940 * 3 2 1 7 7 C 1.37883 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99645 * 189.57818 * 7 2 1 9 9 C 1.50697 * 120.00044 * 9.58944 * 7 2 1 10 10 C 1.50702 * 115.55065 * 35.30382 * 9 7 2 11 11 C 1.38267 * 119.97786 * 246.20786 * 10 9 7 12 12 C 1.38220 * 120.15483 * 179.72567 * 11 10 9 13 13 C 1.38455 * 120.12304 * 0.55232 * 12 11 10 14 14 F 1.35094 * 120.01910 * 179.70698 * 13 12 11 15 15 C 1.38713 * 119.95829 * 359.72059 * 13 12 11 16 16 O 1.36051 * 120.07800 * 179.97438 * 15 13 12 17 17 C 1.38578 * 119.98374 * 66.48071 * 10 9 7 18 18 O 1.35995 * 120.05709 * 0.02802 * 17 10 9 19 19 C 1.52997 * 117.49542 * 249.63408 * 9 7 2 20 20 C 1.52999 * 117.49836 * 180.97645 * 9 7 2 21 21 H 0.96997 * 119.99715 * 354.98888 * 1 2 3 22 22 H 1.08001 * 119.91878 * 359.97438 * 11 10 9 23 23 H 1.07998 * 119.93696 * 180.25291 * 12 11 10 24 24 H 0.96699 * 113.99983 * 270.02825 * 16 15 13 25 25 H 0.96701 * 114.00340 * 95.01224 * 18 17 10 26 26 H 1.09000 * 117.50006 * 359.97438 * 19 9 7 27 27 H 1.09001 * 117.50088 * 145.02486 * 19 9 7 28 28 H 1.09001 * 117.49799 * 214.97841 * 20 9 7 29 29 H 1.09001 * 117.50049 * 359.97178 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0732 -1.2006 0.1562 9 6 1.2667 -2.4902 -0.2163 10 6 0.1077 -2.4254 -1.1773 11 6 -1.1819 -2.6214 -0.7186 12 6 -2.2481 -2.5571 -1.5958 13 6 -2.0282 -2.3075 -2.9398 14 9 -3.0713 -2.2510 -3.7963 15 6 -0.7360 -2.1157 -3.4063 16 8 -0.5170 -1.8708 -4.7265 17 6 0.3354 -2.1750 -2.5211 18 8 1.6041 -1.9882 -2.9737 19 6 1.1435 -3.4408 0.9761 20 6 2.0844 -3.7828 -0.1818 21 1 -0.4849 0.8368 0.0734 22 1 -1.3567 -2.8211 0.3283 23 1 -3.2543 -2.7067 -1.2330 24 1 -0.3789 -2.6676 -5.2567 25 1 2.0184 -2.7885 -3.3247 26 1 1.5964 -3.1291 1.9173 27 1 0.2243 -4.0198 1.0653 28 1 1.7838 -4.5866 -0.8539 29 1 3.1561 -3.6959 -0.0027 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260015631.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:41 Heat of formation + Delta-G solvation = -76.403787 kcal Electronic energy + Delta-G solvation = -17230.016577 eV Core-core repulsion = 14227.207530 eV Total energy + Delta-G solvation = -3002.809047 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.27849 -39.46967 -37.04236 -35.83956 -35.11558 -32.12454 -28.80609 -28.57651 -25.63263 -22.46349 -22.29246 -21.07208 -19.58428 -18.13044 -17.39210 -16.49784 -16.29199 -15.74082 -15.00185 -14.63660 -14.38296 -13.89688 -13.72207 -13.29592 -13.05131 -12.56245 -11.85457 -11.53749 -11.12350 -10.94087 -10.80935 -10.58595 -10.45503 -10.34582 -10.01974 -9.34180 -9.25276 -8.92375 -8.31423 -7.92316 -7.52348 -6.02267 -4.07452 1.83320 1.92419 3.32039 3.38393 3.42223 4.24774 4.40478 4.46580 4.70860 4.93134 5.21351 5.47629 5.64774 5.68702 5.93153 6.15233 6.30911 6.44303 6.52710 6.59964 6.63950 6.83086 6.89037 7.15959 7.20273 7.41863 7.50094 7.84188 7.95798 8.29439 8.51005 8.85530 9.51475 10.98507 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.022640 B = 0.010935 C = 0.009708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.429965 B = 2560.009991 C = 2883.382027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.076 3.924 3 Si 0.894 3.106 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.482 4.482 8 H 0.063 0.937 9 C 0.091 3.909 10 C 0.023 3.977 11 C -0.053 4.053 12 C -0.154 4.154 13 C 0.053 3.947 14 F -0.148 7.148 15 C 0.027 3.973 16 O -0.482 6.482 17 C 0.116 3.884 18 O -0.462 6.462 19 C -0.205 4.205 20 C -0.203 4.203 21 H 0.263 0.737 22 H 0.128 0.872 23 H 0.126 0.874 24 H 0.374 0.626 25 H 0.369 0.631 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.613 -7.554 -3.864 8.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.129 4.129 3 Si 0.722 3.278 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.519 4.519 8 H 0.081 0.919 9 C 0.090 3.910 10 C 0.022 3.978 11 C -0.071 4.071 12 C -0.173 4.173 13 C 0.033 3.967 14 F -0.127 7.127 15 C -0.019 4.019 16 O -0.289 6.289 17 C 0.070 3.930 18 O -0.269 6.269 19 C -0.243 4.243 20 C -0.241 4.241 21 H 0.073 0.927 22 H 0.146 0.854 23 H 0.144 0.856 24 H 0.227 0.773 25 H 0.222 0.778 26 H 0.101 0.899 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.980 -6.208 -3.620 7.455 hybrid contribution 0.286 0.115 -0.422 0.523 sum -1.694 -6.093 -4.042 7.506 Atomic orbital electron populations 1.69897 1.05857 1.27134 1.47761 1.24936 0.94866 0.99171 0.93906 0.86612 0.79711 0.82833 0.78651 1.19919 1.21320 1.20332 1.20293 0.93434 0.88187 1.50005 0.91887 1.17583 0.91733 0.89828 0.91839 1.19511 0.94784 0.91689 0.91803 1.20615 0.90813 0.96852 0.98841 1.20874 1.00229 1.05182 0.91064 1.17707 0.82957 1.07789 0.88243 1.91398 1.56487 1.94575 1.70213 1.18704 0.90976 1.07702 0.84483 1.84986 1.93646 1.34310 1.15997 1.18202 0.83682 1.00232 0.90907 1.85053 1.24500 1.35280 1.82043 1.23116 0.99598 1.06924 0.94667 1.22925 0.97227 1.00926 1.02997 0.92657 0.85365 0.85596 0.77307 0.77769 0.89946 0.91353 0.91494 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.08 11.18 55.43 0.62 -23.46 15 2 C 0.08 2.06 5.26 -17.82 -0.09 1.96 15 3 Si 0.89 21.59 29.55 -169.99 -5.02 16.56 15 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 15 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 15 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 7 C -0.48 -12.78 8.68 -34.44 -0.30 -13.08 15 8 H 0.06 1.67 7.83 -52.49 -0.41 1.26 15 9 C 0.09 2.11 1.55 -156.81 -0.24 1.86 15 10 C 0.02 0.53 3.34 -104.49 -0.35 0.18 15 11 C -0.05 -1.10 8.49 -39.58 -0.34 -1.44 15 12 C -0.15 -2.96 10.02 -39.51 -0.40 -3.35 15 13 C 0.05 1.06 7.31 -39.33 -0.29 0.77 15 14 F -0.15 -2.86 17.11 2.25 0.04 -2.82 15 15 C 0.03 0.56 6.72 -39.09 -0.26 0.30 15 16 O -0.48 -8.88 13.15 -34.42 -0.45 -9.33 15 17 C 0.12 2.52 6.64 -39.14 -0.26 2.26 15 18 O -0.46 -9.66 12.44 -34.25 -0.43 -10.09 15 19 C -0.21 -4.26 9.43 -26.70 -0.25 -4.51 15 20 C -0.20 -4.02 9.94 -26.70 -0.27 -4.28 15 21 H 0.26 7.16 8.32 -40.82 -0.34 6.82 15 22 H 0.13 2.56 7.05 -52.49 -0.37 2.19 15 23 H 0.13 2.05 8.06 -52.49 -0.42 1.62 15 24 H 0.37 4.62 9.07 45.56 0.41 5.03 15 25 H 0.37 5.53 9.06 45.56 0.41 5.94 15 26 H 0.08 1.74 8.14 -51.93 -0.42 1.31 15 27 H 0.07 1.29 7.17 -51.93 -0.37 0.92 15 28 H 0.07 1.18 8.14 -51.93 -0.42 0.75 15 29 H 0.08 1.57 8.14 -51.93 -0.42 1.14 15 LS Contribution 263.12 15.07 3.97 3.97 Total: -1.00 -31.02 263.12 -5.48 -36.50 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -1.15 Total: 8.01 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -3.04 Total: -19.33 kcal Atomic # 7 Polarization: -24.08 SS G_CDS: 0.62 Total: -23.46 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.88 Total: -19.42 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.02 -5.48 -36.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260015631.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.908 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds