Wall clock time and date at job start Mon Mar 30 2020 05:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00330 * 2 1 4 4 H 1.48498 * 109.47347 * 240.00162 * 3 2 1 5 5 H 1.48493 * 109.46909 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46670 * 119.99940 * 3 2 1 7 7 C 1.37883 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99645 * 189.57818 * 7 2 1 9 9 C 1.50697 * 120.00044 * 9.58944 * 7 2 1 10 10 C 1.50702 * 115.55065 * 35.30382 * 9 7 2 11 11 C 1.38267 * 119.97786 * 246.20786 * 10 9 7 12 12 C 1.38220 * 120.15483 * 179.72567 * 11 10 9 13 13 C 1.38455 * 120.12304 * 0.55232 * 12 11 10 14 14 F 1.35094 * 120.01910 * 179.70698 * 13 12 11 15 15 C 1.38713 * 119.95829 * 359.72059 * 13 12 11 16 16 O 1.36051 * 120.07800 * 179.97438 * 15 13 12 17 17 C 1.38578 * 119.98374 * 66.48071 * 10 9 7 18 18 O 1.35995 * 120.05709 * 0.02802 * 17 10 9 19 19 C 1.52997 * 117.49542 * 249.63408 * 9 7 2 20 20 C 1.52999 * 117.49836 * 180.97645 * 9 7 2 21 21 H 0.96997 * 119.99715 * 354.98888 * 1 2 3 22 22 H 1.08001 * 119.91878 * 359.97438 * 11 10 9 23 23 H 1.07998 * 119.93696 * 180.25291 * 12 11 10 24 24 H 0.96699 * 113.99983 * 270.02825 * 16 15 13 25 25 H 0.96701 * 114.00340 * 95.01224 * 18 17 10 26 26 H 1.09000 * 117.50006 * 359.97438 * 19 9 7 27 27 H 1.09001 * 117.50088 * 145.02486 * 19 9 7 28 28 H 1.09001 * 117.49799 * 214.97841 * 20 9 7 29 29 H 1.09001 * 117.50049 * 359.97178 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0732 -1.2006 0.1562 9 6 1.2667 -2.4902 -0.2163 10 6 0.1077 -2.4254 -1.1773 11 6 -1.1819 -2.6214 -0.7186 12 6 -2.2481 -2.5571 -1.5958 13 6 -2.0282 -2.3075 -2.9398 14 9 -3.0713 -2.2510 -3.7963 15 6 -0.7360 -2.1157 -3.4063 16 8 -0.5170 -1.8708 -4.7265 17 6 0.3354 -2.1750 -2.5211 18 8 1.6041 -1.9882 -2.9737 19 6 1.1435 -3.4408 0.9761 20 6 2.0844 -3.7828 -0.1818 21 1 -0.4849 0.8368 0.0734 22 1 -1.3567 -2.8211 0.3283 23 1 -3.2543 -2.7067 -1.2330 24 1 -0.3789 -2.6676 -5.2567 25 1 2.0184 -2.7885 -3.3247 26 1 1.5964 -3.1291 1.9173 27 1 0.2243 -4.0198 1.0653 28 1 1.7838 -4.5866 -0.8539 29 1 3.1561 -3.6959 -0.0027 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260015631.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:41 Heat of formation + Delta-G solvation = -97.655848 kcal Electronic energy + Delta-G solvation = -17230.938135 eV Core-core repulsion = 14227.207530 eV Total energy + Delta-G solvation = -3003.730606 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.79520 -41.02164 -38.60006 -37.39967 -36.68031 -34.09429 -30.37271 -30.11396 -27.58539 -24.08169 -23.84446 -22.65733 -21.26965 -19.72347 -18.99313 -18.16107 -17.88418 -17.27713 -16.59038 -16.53009 -16.02565 -15.43017 -15.27223 -14.97869 -14.62154 -14.15773 -13.51133 -13.19265 -12.94363 -12.84702 -12.49650 -12.27990 -12.07984 -11.98215 -11.70088 -11.08632 -10.99442 -10.63744 -10.16796 -9.44873 -9.15179 -8.00265 -6.09626 0.30371 0.37179 1.38916 1.44438 1.48110 2.43226 2.70194 2.99633 3.07851 3.28680 3.69687 3.71405 4.07747 4.17707 4.41337 4.55818 4.74752 4.86951 4.97824 5.06569 5.10131 5.23413 5.32864 5.57619 5.59206 5.76226 5.85728 6.00778 6.40045 6.69834 6.84397 7.13762 7.49052 8.95585 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.022640 B = 0.010935 C = 0.009708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.429965 B = 2560.009991 C = 2883.382027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.035 3.965 3 Si 0.936 3.064 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.493 4.493 8 H 0.051 0.949 9 C 0.056 3.944 10 C 0.008 3.992 11 C -0.063 4.063 12 C -0.146 4.146 13 C 0.044 3.956 14 F -0.145 7.145 15 C 0.027 3.973 16 O -0.492 6.492 17 C 0.101 3.899 18 O -0.481 6.481 19 C -0.199 4.199 20 C -0.180 4.180 21 H 0.257 0.743 22 H 0.132 0.868 23 H 0.155 0.845 24 H 0.401 0.599 25 H 0.392 0.608 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 -8.441 -4.218 9.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.167 4.167 3 Si 0.764 3.236 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.194 1.194 7 C -0.530 4.530 8 H 0.070 0.930 9 C 0.056 3.944 10 C 0.007 3.993 11 C -0.081 4.081 12 C -0.165 4.165 13 C 0.024 3.976 14 F -0.123 7.123 15 C -0.019 4.019 16 O -0.304 6.304 17 C 0.055 3.945 18 O -0.291 6.291 19 C -0.237 4.237 20 C -0.217 4.217 21 H 0.066 0.934 22 H 0.150 0.850 23 H 0.173 0.827 24 H 0.258 0.742 25 H 0.248 0.752 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.111 0.889 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.221 -7.131 -3.985 8.465 hybrid contribution 0.420 0.329 -0.375 0.652 sum -1.802 -6.802 -4.360 8.278 Atomic orbital electron populations 1.70001 1.06412 1.26868 1.49287 1.25453 0.95544 1.01276 0.94457 0.85943 0.78756 0.80486 0.78455 1.20753 1.21532 1.19368 1.20561 0.93181 0.90038 1.49219 0.93041 1.17613 0.93296 0.89698 0.93788 1.19547 0.95062 0.92779 0.91950 1.20704 0.90776 0.97382 0.99269 1.21120 1.01224 1.03653 0.90499 1.17828 0.82965 1.08085 0.88697 1.91404 1.56220 1.94586 1.70132 1.18738 0.90944 1.07043 0.85175 1.84900 1.93595 1.36474 1.15415 1.18321 0.84133 1.00903 0.91095 1.84973 1.24607 1.37311 1.82233 1.23089 1.00714 1.05976 0.93913 1.22947 0.96976 0.99539 1.02257 0.93384 0.85040 0.82737 0.74200 0.75202 0.90873 0.89429 0.88936 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.15 11.18 21.45 0.24 -48.91 15 2 C 0.03 1.87 5.26 84.66 0.45 2.31 15 3 Si 0.94 44.38 29.55 68.60 2.03 46.41 15 4 H -0.28 -13.56 7.11 99.48 0.71 -12.85 15 5 H -0.29 -13.68 7.11 99.48 0.71 -12.98 15 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 7 C -0.49 -26.02 8.68 25.60 0.22 -25.80 15 8 H 0.05 2.74 7.83 -2.91 -0.02 2.72 15 9 C 0.06 2.56 1.55 -53.68 -0.08 2.48 15 10 C 0.01 0.35 3.34 -19.78 -0.07 0.28 15 11 C -0.06 -2.53 8.49 22.27 0.19 -2.34 15 12 C -0.15 -5.30 10.02 22.32 0.22 -5.08 15 13 C 0.04 1.68 7.31 22.44 0.16 1.84 15 14 F -0.14 -5.28 17.11 44.97 0.77 -4.51 15 15 C 0.03 1.07 6.72 22.59 0.15 1.22 15 16 O -0.49 -17.25 13.15 -80.24 -1.06 -18.31 15 17 C 0.10 4.29 6.64 22.56 0.15 4.44 15 18 O -0.48 -19.66 12.44 -79.61 -0.99 -20.65 15 19 C -0.20 -7.95 9.43 30.62 0.29 -7.66 15 20 C -0.18 -6.73 9.94 30.62 0.30 -6.43 15 21 H 0.26 14.03 8.32 -92.71 -0.77 13.26 15 22 H 0.13 5.07 7.05 -2.91 -0.02 5.05 15 23 H 0.15 4.58 8.06 -2.91 -0.02 4.56 15 24 H 0.40 8.99 9.07 -74.06 -0.67 8.32 15 25 H 0.39 11.18 9.06 -74.06 -0.67 10.51 15 26 H 0.07 3.01 8.14 -2.39 -0.02 2.99 15 27 H 0.09 3.12 7.17 -2.39 -0.02 3.10 15 28 H 0.09 2.97 8.14 -2.39 -0.02 2.95 15 29 H 0.08 3.01 8.14 -2.39 -0.02 2.99 15 Total: -1.00 -64.38 263.12 2.84 -61.53 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -0.14 Total: 19.16 kcal Atomic # 6 Polarization: -36.72 SS G_CDS: 1.99 Total: -34.73 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.24 Total: -48.91 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -2.05 Total: -38.95 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 0.77 Total: -4.51 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -64.38 2.84 -61.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260015631.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.122 kcal (2) G-P(sol) polarization free energy of solvation -64.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds