Wall clock time and date at job start Mon Mar 30 2020 05:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99802 * 2 1 4 4 H 1.48501 * 109.47419 * 270.00055 * 3 2 1 5 5 H 1.48498 * 109.47414 * 30.00484 * 3 2 1 6 6 H 1.48503 * 109.47084 * 150.00360 * 3 2 1 7 7 C 1.37882 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99643 * 185.50065 * 7 2 1 9 9 C 1.50693 * 119.99865 * 5.49926 * 7 2 1 10 10 H 1.09006 * 109.43699 * 330.39025 * 9 7 2 11 11 C 1.53070 * 109.40351 * 90.28437 * 9 7 2 12 12 C 1.53404 * 108.30580 * 168.22756 * 11 9 7 13 13 O 1.42826 * 108.37308 * 295.29845 * 12 11 9 14 14 C 1.35848 * 117.85702 * 49.20259 * 13 12 11 15 15 C 1.39164 * 118.48958 * 163.02116 * 14 13 12 16 16 C 1.37965 * 120.24334 * 179.59729 * 15 14 13 17 17 C 1.38268 * 119.97480 * 359.97438 * 16 15 14 18 18 C 1.38231 * 119.96580 * 0.06363 * 17 16 15 19 19 Cl 1.73595 * 119.85312 * 179.97438 * 18 17 16 20 20 C 1.38350 * 121.80686 * 342.73364 * 14 13 12 21 21 H 0.97002 * 120.00300 * 5.01659 * 1 2 3 22 22 H 1.08999 * 109.69860 * 287.93079 * 11 9 7 23 23 H 1.09002 * 109.69453 * 48.52282 * 11 9 7 24 24 H 1.09002 * 109.68284 * 175.58182 * 12 11 9 25 25 H 1.09002 * 109.68655 * 55.01717 * 12 11 9 26 26 H 1.08005 * 119.87246 * 359.58607 * 15 14 13 27 27 H 1.08001 * 120.01240 * 180.02562 * 16 15 14 28 28 H 1.07999 * 120.01819 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0808 -1.1962 0.0891 9 6 1.2563 -2.4961 -0.1262 10 1 0.2618 -2.3861 0.3065 11 6 1.1298 -2.8692 -1.6053 12 6 0.6375 -4.3193 -1.6960 13 8 1.6424 -5.1712 -1.1443 14 6 2.1541 -4.8447 0.0711 15 6 2.8490 -5.8185 0.7820 16 6 3.3910 -5.5238 2.0161 17 6 3.2447 -4.2569 2.5501 18 6 2.5544 -3.2869 1.8475 19 17 2.3719 -1.6974 2.5211 20 6 2.0061 -3.5784 0.6083 21 1 -0.4851 0.8368 -0.0735 22 1 0.4134 -2.2069 -2.0913 23 1 2.1015 -2.7800 -2.0911 24 1 0.4644 -4.5836 -2.7392 25 1 -0.2878 -4.4290 -1.1305 26 1 2.9644 -6.8086 0.3662 27 1 3.9299 -6.2823 2.5644 28 1 3.6690 -4.0253 3.5159 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260058639.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:50 Heat of formation + Delta-G solvation = -25.022573 kcal Electronic energy + Delta-G solvation = -14998.472224 eV Core-core repulsion = 12426.227608 eV Total energy + Delta-G solvation = -2572.244615 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.93625 -36.99363 -35.29487 -34.22512 -31.56277 -29.99513 -29.25230 -26.30546 -23.43117 -22.76683 -21.51070 -19.07875 -17.17434 -16.55920 -16.03261 -15.28771 -14.57730 -14.31662 -13.86026 -13.44219 -12.86069 -12.69292 -12.59474 -12.03464 -11.35859 -11.29018 -11.01790 -10.89245 -10.69427 -10.29076 -10.17019 -9.89655 -9.81719 -9.17539 -9.07123 -8.35107 -7.76699 -7.52253 -6.02633 -3.93398 1.85108 1.96290 3.19780 3.31816 3.38268 3.41696 3.90830 4.28278 4.46953 5.23775 5.39287 5.58695 5.66065 5.73318 5.79400 5.91232 6.00345 6.10194 6.34290 6.65203 6.69199 6.85266 6.90102 6.96213 7.30594 7.45694 7.62123 7.90681 8.03617 8.28514 8.97639 9.58816 11.07592 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.026333 B = 0.011893 C = 0.008858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.061644 B = 2353.752569 C = 3160.114110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.484 4.484 8 H 0.058 0.942 9 C 0.070 3.930 10 H 0.077 0.923 11 C -0.142 4.142 12 C 0.055 3.945 13 O -0.323 6.323 14 C 0.125 3.875 15 C -0.162 4.162 16 C -0.100 4.100 17 C -0.161 4.161 18 C 0.012 3.988 19 Cl -0.038 7.038 20 C -0.114 4.114 21 H 0.260 0.740 22 H 0.076 0.924 23 H 0.060 0.940 24 H 0.092 0.908 25 H 0.056 0.944 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.974 -7.912 1.610 8.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.705 3.295 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.522 4.522 8 H 0.076 0.924 9 C 0.051 3.949 10 H 0.094 0.906 11 C -0.180 4.180 12 C -0.020 4.020 13 O -0.238 6.238 14 C 0.080 3.920 15 C -0.180 4.180 16 C -0.119 4.119 17 C -0.180 4.180 18 C -0.015 4.015 19 Cl -0.009 7.009 20 C -0.116 4.116 21 H 0.070 0.930 22 H 0.095 0.905 23 H 0.079 0.921 24 H 0.110 0.890 25 H 0.074 0.926 26 H 0.140 0.860 27 H 0.142 0.858 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.842 -7.779 1.619 8.439 hybrid contribution 0.349 1.305 0.007 1.351 sum 3.192 -6.475 1.627 7.399 Atomic orbital electron populations 1.69875 1.05761 1.26838 1.50843 1.24718 0.94602 0.98493 0.95158 0.86794 0.80333 0.84175 0.78236 1.20652 1.21334 1.19586 1.20800 0.93186 0.89215 1.48961 0.92417 1.17983 0.97314 0.90165 0.89396 0.90559 1.22382 1.01274 0.92899 1.01416 1.23133 0.89120 0.91997 0.97737 1.85873 1.54540 1.52344 1.31032 1.18673 0.95700 0.92087 0.85544 1.20478 1.03570 0.98537 0.95452 1.20580 1.00178 0.96033 0.95062 1.20881 1.03079 0.93212 1.00835 1.20673 0.99003 0.87664 0.94187 1.98373 1.96014 1.22697 1.83788 1.20619 1.01428 0.94425 0.95146 0.92977 0.90504 0.92146 0.88963 0.92551 0.85992 0.85798 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.77 12.83 55.43 0.71 -24.06 15 2 C 0.07 1.90 5.31 -17.82 -0.09 1.80 15 3 Si 0.88 21.08 29.54 -169.99 -5.02 16.06 15 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 7 C -0.48 -12.56 4.79 -34.44 -0.16 -12.73 15 8 H 0.06 1.55 7.44 -52.49 -0.39 1.16 15 9 C 0.07 1.67 2.16 -92.86 -0.20 1.47 15 10 H 0.08 2.05 7.36 -51.93 -0.38 1.66 15 11 C -0.14 -3.03 5.49 -26.49 -0.15 -3.17 15 12 C 0.05 0.99 7.03 37.37 0.26 1.26 15 13 O -0.32 -6.29 10.27 -19.26 -0.20 -6.49 15 14 C 0.13 2.52 6.47 -39.20 -0.25 2.27 15 15 C -0.16 -2.77 9.94 -39.34 -0.39 -3.16 15 16 C -0.10 -1.58 10.04 -39.67 -0.40 -1.98 15 17 C -0.16 -2.83 9.82 -39.57 -0.39 -3.22 15 18 C 0.01 0.25 6.11 -39.44 -0.24 0.01 15 19 Cl -0.04 -0.84 24.80 -51.86 -1.29 -2.13 15 20 C -0.11 -2.54 5.43 -104.41 -0.57 -3.10 15 21 H 0.26 6.97 8.32 -40.82 -0.34 6.63 15 22 H 0.08 1.69 8.14 -51.93 -0.42 1.26 15 23 H 0.06 1.32 8.10 -51.93 -0.42 0.90 15 24 H 0.09 1.38 8.14 -51.93 -0.42 0.95 15 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 26 H 0.12 1.79 8.06 -52.48 -0.42 1.37 15 27 H 0.12 1.50 8.06 -52.49 -0.42 1.08 15 28 H 0.12 1.85 8.06 -52.49 -0.42 1.43 15 LS Contribution 251.14 15.07 3.78 3.78 Total: -1.00 -27.80 251.14 -7.46 -35.26 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -2.87 Total: -1.88 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -2.58 Total: -20.55 kcal Atomic # 7 Polarization: -24.77 SS G_CDS: 0.71 Total: -24.06 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.20 Total: -6.49 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.29 Total: -2.13 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -27.80 -7.46 -35.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260058639.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.239 kcal (2) G-P(sol) polarization free energy of solvation -27.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds