Wall clock time and date at job start Mon Mar 30 2020 05:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99802 * 2 1 4 4 H 1.48501 * 109.47419 * 270.00055 * 3 2 1 5 5 H 1.48498 * 109.47414 * 30.00484 * 3 2 1 6 6 H 1.48503 * 109.47084 * 150.00360 * 3 2 1 7 7 C 1.37882 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99643 * 185.50065 * 7 2 1 9 9 C 1.50693 * 119.99865 * 5.49926 * 7 2 1 10 10 H 1.09006 * 109.43699 * 330.39025 * 9 7 2 11 11 C 1.53070 * 109.40351 * 90.28437 * 9 7 2 12 12 C 1.53404 * 108.30580 * 168.22756 * 11 9 7 13 13 O 1.42826 * 108.37308 * 295.29845 * 12 11 9 14 14 C 1.35848 * 117.85702 * 49.20259 * 13 12 11 15 15 C 1.39164 * 118.48958 * 163.02116 * 14 13 12 16 16 C 1.37965 * 120.24334 * 179.59729 * 15 14 13 17 17 C 1.38268 * 119.97480 * 359.97438 * 16 15 14 18 18 C 1.38231 * 119.96580 * 0.06363 * 17 16 15 19 19 Cl 1.73595 * 119.85312 * 179.97438 * 18 17 16 20 20 C 1.38350 * 121.80686 * 342.73364 * 14 13 12 21 21 H 0.97002 * 120.00300 * 5.01659 * 1 2 3 22 22 H 1.08999 * 109.69860 * 287.93079 * 11 9 7 23 23 H 1.09002 * 109.69453 * 48.52282 * 11 9 7 24 24 H 1.09002 * 109.68284 * 175.58182 * 12 11 9 25 25 H 1.09002 * 109.68655 * 55.01717 * 12 11 9 26 26 H 1.08005 * 119.87246 * 359.58607 * 15 14 13 27 27 H 1.08001 * 120.01240 * 180.02562 * 16 15 14 28 28 H 1.07999 * 120.01819 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0808 -1.1962 0.0891 9 6 1.2563 -2.4961 -0.1262 10 1 0.2618 -2.3861 0.3065 11 6 1.1298 -2.8692 -1.6053 12 6 0.6375 -4.3193 -1.6960 13 8 1.6424 -5.1712 -1.1443 14 6 2.1541 -4.8447 0.0711 15 6 2.8490 -5.8185 0.7820 16 6 3.3910 -5.5238 2.0161 17 6 3.2447 -4.2569 2.5501 18 6 2.5544 -3.2869 1.8475 19 17 2.3719 -1.6974 2.5211 20 6 2.0061 -3.5784 0.6083 21 1 -0.4851 0.8368 -0.0735 22 1 0.4134 -2.2069 -2.0913 23 1 2.1015 -2.7800 -2.0911 24 1 0.4644 -4.5836 -2.7392 25 1 -0.2878 -4.4290 -1.1305 26 1 2.9644 -6.8086 0.3662 27 1 3.9299 -6.2823 2.5644 28 1 3.6690 -4.0253 3.5159 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260058639.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:49 Heat of formation + Delta-G solvation = -40.262766 kcal Electronic energy + Delta-G solvation = -14999.133088 eV Core-core repulsion = 12426.227608 eV Total energy + Delta-G solvation = -2572.905480 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.44766 -38.46248 -36.90909 -36.02090 -33.46186 -31.47319 -30.72787 -28.14166 -25.09682 -24.36598 -23.05245 -20.68829 -18.70442 -18.45095 -17.59765 -16.81422 -16.43830 -15.79750 -15.39335 -14.93013 -14.63950 -14.43606 -14.14350 -13.59239 -13.07666 -12.93285 -12.77697 -12.54343 -12.48026 -12.13451 -11.79876 -11.61106 -11.39470 -11.05349 -10.83899 -10.35362 -9.33895 -9.02197 -8.06830 -6.00200 0.38754 0.51862 1.34612 1.39459 1.47097 1.66161 2.43444 2.48872 2.85330 3.23736 4.06795 4.08465 4.20707 4.26826 4.34987 4.47182 4.54466 4.66788 4.89266 5.03168 5.05169 5.32188 5.45706 5.48774 5.57664 5.79712 5.84185 5.90781 6.30547 6.53425 6.92613 7.52432 9.03124 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.026333 B = 0.011893 C = 0.008858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.061644 B = 2353.752569 C = 3160.114110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.033 3.967 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.475 4.475 8 H 0.044 0.956 9 C 0.070 3.930 10 H 0.038 0.962 11 C -0.137 4.137 12 C 0.062 3.938 13 O -0.323 6.323 14 C 0.109 3.891 15 C -0.155 4.155 16 C -0.079 4.079 17 C -0.158 4.158 18 C -0.012 4.012 19 Cl -0.063 7.063 20 C -0.151 4.151 21 H 0.258 0.742 22 H 0.062 0.938 23 H 0.052 0.948 24 H 0.130 0.870 25 H 0.057 0.943 26 H 0.154 0.846 27 H 0.175 0.825 28 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.360 -10.155 1.859 11.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.165 4.165 3 Si 0.746 3.254 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.195 1.195 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.052 3.948 10 H 0.056 0.944 11 C -0.175 4.175 12 C -0.012 4.012 13 O -0.238 6.238 14 C 0.063 3.937 15 C -0.173 4.173 16 C -0.097 4.097 17 C -0.177 4.177 18 C -0.039 4.039 19 Cl -0.034 7.034 20 C -0.153 4.153 21 H 0.068 0.932 22 H 0.081 0.919 23 H 0.071 0.929 24 H 0.148 0.852 25 H 0.075 0.925 26 H 0.172 0.828 27 H 0.192 0.808 28 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.242 -10.027 1.865 11.046 hybrid contribution -0.021 1.872 -0.019 1.872 sum 4.221 -8.156 1.846 9.367 Atomic orbital electron populations 1.69977 1.06776 1.27101 1.52630 1.25198 0.95066 1.00686 0.95534 0.86125 0.79360 0.81598 0.78362 1.20015 1.21431 1.19479 1.20885 0.92476 0.90430 1.47517 0.93775 1.17789 0.95432 0.90592 0.91034 0.94440 1.22200 1.00598 0.95312 0.99385 1.23161 0.88676 0.89471 0.99902 1.85872 1.54753 1.52204 1.30965 1.18980 0.96581 0.92049 0.86041 1.20941 1.01798 0.99095 0.95492 1.21154 0.98270 0.95961 0.94331 1.21242 1.01816 0.93164 1.01494 1.20958 1.00738 0.87538 0.94627 1.98354 1.96286 1.24767 1.83964 1.20520 1.03400 0.95135 0.96211 0.93233 0.91888 0.92925 0.85190 0.92485 0.82798 0.80811 0.83556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.92 12.83 21.45 0.28 -52.64 15 2 C 0.03 1.80 5.31 84.66 0.45 2.25 15 3 Si 0.92 43.88 29.54 68.60 2.03 45.91 15 4 H -0.27 -12.74 7.11 99.48 0.71 -12.03 15 5 H -0.29 -13.73 7.11 99.48 0.71 -13.02 15 6 H -0.27 -12.73 7.11 99.48 0.71 -12.02 15 7 C -0.47 -25.35 4.79 25.60 0.12 -25.22 15 8 H 0.04 2.43 7.44 -2.91 -0.02 2.41 15 9 C 0.07 3.46 2.16 -12.24 -0.03 3.44 15 10 H 0.04 2.12 7.36 -2.38 -0.02 2.10 15 11 C -0.14 -5.94 5.49 30.75 0.17 -5.77 15 12 C 0.06 2.18 7.03 72.12 0.51 2.69 15 13 O -0.32 -11.91 10.27 -91.85 -0.94 -12.85 15 14 C 0.11 4.17 6.47 22.52 0.15 4.32 15 15 C -0.15 -4.67 9.94 22.43 0.22 -4.44 15 16 C -0.08 -2.11 10.04 22.21 0.22 -1.88 15 17 C -0.16 -5.10 9.82 22.28 0.22 -4.88 15 18 C -0.01 -0.49 6.11 22.36 0.14 -0.35 15 19 Cl -0.06 -2.82 24.80 -2.72 -0.07 -2.89 15 20 C -0.15 -6.68 5.43 -19.73 -0.11 -6.79 15 21 H 0.26 14.27 8.32 -92.71 -0.77 13.50 15 22 H 0.06 2.85 8.14 -2.39 -0.02 2.83 15 23 H 0.05 2.32 8.10 -2.39 -0.02 2.30 15 24 H 0.13 3.55 8.14 -2.39 -0.02 3.53 15 25 H 0.06 1.99 8.14 -2.39 -0.02 1.97 15 26 H 0.15 3.67 8.06 -2.91 -0.02 3.65 15 27 H 0.17 2.96 8.06 -2.91 -0.02 2.94 15 28 H 0.15 3.93 8.06 -2.91 -0.02 3.91 15 Total: -1.00 -61.57 251.14 4.51 -57.06 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: 1.16 Total: 2.05 kcal Atomic # 6 Polarization: -38.70 SS G_CDS: 2.06 Total: -36.64 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.28 Total: -52.64 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -0.94 Total: -12.85 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 17 Polarization: -2.82 SS G_CDS: -0.07 Total: -2.89 kcal Total: -61.57 4.51 -57.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260058639.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.797 kcal (2) G-P(sol) polarization free energy of solvation -61.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds