Wall clock time and date at job start Mon Mar 30 2020 05:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00011 * 2 1 4 4 H 1.48499 * 109.47158 * 240.00438 * 3 2 1 5 5 H 1.48499 * 109.46897 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47511 * 120.00362 * 3 2 1 7 7 C 1.37875 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00013 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99975 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47225 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.96898 * 302.32253 * 10 9 7 12 12 C 1.54147 * 111.14163 * 178.16450 * 10 9 7 13 13 C 1.50872 * 110.47585 * 213.60955 * 12 10 9 14 14 C 1.38894 * 115.35760 * 20.90118 * 13 12 10 15 15 C 1.38807 * 121.15177 * 179.20398 * 14 13 12 16 16 C 1.38081 * 120.21291 * 0.29877 * 15 14 13 17 17 C 1.38235 * 119.32457 * 0.02562 * 16 15 14 18 18 C 1.37971 * 120.51423 * 359.84291 * 17 16 15 19 19 F 1.35101 * 119.50161 * 179.97438 * 18 17 16 20 20 S 1.77439 * 108.28460 * 358.96683 * 14 13 12 21 21 H 0.97004 * 120.00176 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47098 * 60.00933 * 9 7 2 23 23 H 1.08993 * 109.47285 * 300.00259 * 9 7 2 24 24 H 1.09001 * 109.28885 * 93.33151 * 12 10 9 25 25 H 1.09004 * 109.27879 * 333.88018 * 12 10 9 26 26 H 1.08000 * 119.88840 * 180.29815 * 15 14 13 27 27 H 1.07997 * 120.33001 * 180.02562 * 16 15 14 28 28 H 1.08005 * 119.74354 * 179.85921 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 1 2.9124 -3.6049 -0.8606 12 6 1.5144 -5.0184 0.0455 13 6 2.3191 -6.0252 0.8296 14 6 3.2544 -5.4877 1.7045 15 6 4.0486 -6.3046 2.4974 16 6 3.9243 -7.6778 2.4235 17 6 3.0026 -8.2283 1.5527 18 6 2.2107 -7.4172 0.7661 19 9 1.3169 -7.9771 -0.0783 20 16 3.1934 -3.7197 1.5672 21 1 -0.4850 0.8401 0.0004 22 1 0.6242 -2.5567 -0.8904 23 1 0.6247 -2.5571 0.8896 24 1 1.3712 -5.3850 -0.9710 25 1 0.5417 -4.8871 0.5197 26 1 4.7661 -5.8646 3.1742 27 1 4.5410 -8.3151 3.0398 28 1 2.9014 -9.3016 1.4878 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260067017.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:24 Heat of formation + Delta-G solvation = -34.413094 kcal Electronic energy + Delta-G solvation = -14011.147615 eV Core-core repulsion = 11452.912292 eV Total energy + Delta-G solvation = -2558.235323 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.78571 -38.96934 -35.22106 -32.93610 -30.61984 -30.17703 -26.98650 -24.03961 -22.97804 -21.50823 -20.42760 -17.95030 -16.53407 -16.35178 -15.62868 -15.58290 -15.23546 -14.70729 -14.40761 -13.73706 -13.23528 -12.72414 -12.69855 -12.24651 -11.96305 -11.62377 -11.42753 -11.09371 -10.95968 -10.65637 -10.43642 -9.84638 -9.63593 -9.42931 -9.11594 -8.55124 -8.44275 -6.96449 -6.10411 -4.13852 1.15400 1.20474 2.07861 2.90078 3.30439 3.34512 3.37669 3.55689 4.31978 4.39418 4.64060 4.86561 5.04284 5.27152 5.30325 5.41662 5.53855 5.58155 5.92428 6.09158 6.13883 6.24859 6.30618 6.34104 6.46767 6.88898 7.39838 7.51508 7.84728 8.20844 8.89684 9.50961 11.00575 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.045971 B = 0.006178 C = 0.005576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.933205 B = 4531.265809 C = 5020.367029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.039 3.961 10 C -0.032 4.032 11 H 0.096 0.904 12 C -0.087 4.087 13 C -0.140 4.140 14 C -0.060 4.060 15 C -0.109 4.109 16 C -0.080 4.080 17 C -0.171 4.171 18 C 0.119 3.881 19 F -0.142 7.142 20 S -0.108 6.108 21 H 0.263 0.737 22 H 0.037 0.963 23 H 0.033 0.967 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.130 0.870 27 H 0.136 0.864 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.805 -13.875 2.945 15.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.563 4.563 8 H 0.077 0.923 9 C 0.001 3.999 10 C -0.160 4.160 11 H 0.114 0.886 12 C -0.125 4.125 13 C -0.147 4.147 14 C -0.173 4.173 15 C -0.133 4.133 16 C -0.100 4.100 17 C -0.193 4.193 18 C 0.098 3.902 19 F -0.121 7.121 20 S 0.139 5.861 21 H 0.073 0.927 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.103 0.897 25 H 0.113 0.887 26 H 0.148 0.852 27 H 0.153 0.847 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.050 -12.649 3.606 14.477 hybrid contribution -0.211 -0.259 -0.886 0.947 sum 5.839 -12.908 2.720 14.426 Atomic orbital electron populations 1.69935 1.06072 1.27073 1.49959 1.24962 0.94837 0.99316 0.94858 0.86610 0.79599 0.82806 0.78805 1.20128 1.21212 1.20041 1.21066 0.93073 0.90456 1.51713 0.92263 1.19158 0.92662 0.89347 0.98745 1.24427 0.99787 0.97522 0.94269 0.88618 1.21098 0.99428 0.91660 1.00336 1.21085 0.99587 0.92864 1.01186 1.22569 0.97113 0.99808 0.97859 1.20462 0.99792 0.92651 1.00428 1.20859 0.97277 0.94326 0.97505 1.20811 0.99049 0.99969 0.99431 1.17575 0.90882 0.89688 0.92071 1.91469 1.66032 1.85557 1.69024 1.86666 1.69949 0.95871 1.33604 0.92698 0.94485 0.94890 0.89662 0.88673 0.85184 0.84665 0.84888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.96 13.29 55.43 0.74 -25.22 15 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 15 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 15 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 15 6 H -0.27 -6.52 7.11 56.52 0.40 -6.11 15 7 C -0.52 -14.24 8.65 -34.44 -0.30 -14.53 15 8 H 0.06 1.59 7.72 -52.49 -0.41 1.18 15 9 C 0.04 0.95 4.46 -27.88 -0.12 0.83 15 10 C -0.03 -0.64 3.39 -26.13 -0.09 -0.73 15 11 H 0.10 1.89 8.14 -51.93 -0.42 1.46 15 12 C -0.09 -1.53 5.74 -27.20 -0.16 -1.69 15 13 C -0.14 -2.36 5.98 -103.72 -0.62 -2.98 15 14 C -0.06 -1.01 6.48 -39.13 -0.25 -1.26 15 15 C -0.11 -1.48 10.05 -39.43 -0.40 -1.88 15 16 C -0.08 -0.91 10.08 -39.64 -0.40 -1.31 15 17 C -0.17 -2.10 9.96 -39.68 -0.40 -2.50 15 18 C 0.12 1.79 7.30 -39.11 -0.29 1.51 15 19 F -0.14 -2.17 17.12 2.25 0.04 -2.13 15 20 S -0.11 -2.12 22.10 -107.50 -2.38 -4.50 15 21 H 0.26 7.28 8.31 -40.82 -0.34 6.94 15 22 H 0.04 0.94 8.14 -51.93 -0.42 0.52 15 23 H 0.03 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.08 1.37 8.14 -51.93 -0.42 0.95 15 25 H 0.10 1.70 7.86 -51.93 -0.41 1.29 15 26 H 0.13 1.53 8.06 -52.49 -0.42 1.10 15 27 H 0.14 1.06 8.06 -52.49 -0.42 0.63 15 28 H 0.13 1.29 8.06 -52.48 -0.42 0.86 15 LS Contribution 261.53 15.07 3.94 3.94 Total: -1.00 -28.92 261.53 -8.70 -37.63 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: -2.91 Total: -3.14 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -3.12 Total: -22.89 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.74 Total: -25.22 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -2.12 SS G_CDS: -2.38 Total: -4.50 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.92 -8.70 -37.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260067017.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.212 kcal (2) G-P(sol) polarization free energy of solvation -28.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds