Wall clock time and date at job start Mon Mar 30 2020 05:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00011 * 2 1 4 4 H 1.48499 * 109.47158 * 240.00438 * 3 2 1 5 5 H 1.48499 * 109.46897 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47511 * 120.00362 * 3 2 1 7 7 C 1.37875 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00013 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99975 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47225 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.96898 * 302.32253 * 10 9 7 12 12 C 1.54147 * 111.14163 * 178.16450 * 10 9 7 13 13 C 1.50872 * 110.47585 * 213.60955 * 12 10 9 14 14 C 1.38894 * 115.35760 * 20.90118 * 13 12 10 15 15 C 1.38807 * 121.15177 * 179.20398 * 14 13 12 16 16 C 1.38081 * 120.21291 * 0.29877 * 15 14 13 17 17 C 1.38235 * 119.32457 * 0.02562 * 16 15 14 18 18 C 1.37971 * 120.51423 * 359.84291 * 17 16 15 19 19 F 1.35101 * 119.50161 * 179.97438 * 18 17 16 20 20 S 1.77439 * 108.28460 * 358.96683 * 14 13 12 21 21 H 0.97004 * 120.00176 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47098 * 60.00933 * 9 7 2 23 23 H 1.08993 * 109.47285 * 300.00259 * 9 7 2 24 24 H 1.09001 * 109.28885 * 93.33151 * 12 10 9 25 25 H 1.09004 * 109.27879 * 333.88018 * 12 10 9 26 26 H 1.08000 * 119.88840 * 180.29815 * 15 14 13 27 27 H 1.07997 * 120.33001 * 180.02562 * 16 15 14 28 28 H 1.08005 * 119.74354 * 179.85921 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 1 2.9124 -3.6049 -0.8606 12 6 1.5144 -5.0184 0.0455 13 6 2.3191 -6.0252 0.8296 14 6 3.2544 -5.4877 1.7045 15 6 4.0486 -6.3046 2.4974 16 6 3.9243 -7.6778 2.4235 17 6 3.0026 -8.2283 1.5527 18 6 2.2107 -7.4172 0.7661 19 9 1.3169 -7.9771 -0.0783 20 16 3.1934 -3.7197 1.5672 21 1 -0.4850 0.8401 0.0004 22 1 0.6242 -2.5567 -0.8904 23 1 0.6247 -2.5571 0.8896 24 1 1.3712 -5.3850 -0.9710 25 1 0.5417 -4.8871 0.5197 26 1 4.7661 -5.8646 3.1742 27 1 4.5410 -8.3151 3.0398 28 1 2.9014 -9.3016 1.4878 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260067017.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:24 Heat of formation + Delta-G solvation = -49.166346 kcal Electronic energy + Delta-G solvation = -14011.787364 eV Core-core repulsion = 11452.912292 eV Total energy + Delta-G solvation = -2558.875072 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.93814 -40.12228 -36.80391 -34.80549 -32.18710 -31.33809 -28.64535 -25.70269 -24.30993 -22.84375 -21.98083 -19.15596 -18.57902 -17.56710 -16.90567 -16.79856 -16.53742 -16.50897 -15.85977 -15.07465 -14.63681 -14.18819 -14.10374 -13.88216 -13.37132 -13.21913 -12.85751 -12.72701 -12.51895 -12.44104 -12.04440 -11.75716 -11.38386 -11.01620 -10.66138 -10.50770 -9.67535 -8.44261 -8.23997 -6.34258 0.03316 0.10241 0.65596 1.39253 1.40124 1.43083 1.49555 2.38467 2.48040 3.11068 3.19959 3.39343 3.69727 3.95000 3.96875 4.19705 4.33735 4.44897 4.60901 4.64683 4.77949 4.98184 5.08446 5.20264 5.30648 5.31251 5.45432 5.71251 5.84059 6.11072 6.76914 7.34361 8.87513 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.045971 B = 0.006178 C = 0.005576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.933205 B = 4531.265809 C = 5020.367029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.059 0.941 9 C 0.048 3.952 10 C -0.025 4.025 11 H 0.097 0.903 12 C -0.081 4.081 13 C -0.161 4.161 14 C -0.074 4.074 15 C -0.107 4.107 16 C -0.059 4.059 17 C -0.155 4.155 18 C 0.104 3.896 19 F -0.147 7.147 20 S -0.157 6.157 21 H 0.265 0.735 22 H 0.018 0.982 23 H 0.006 0.994 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.150 0.850 27 H 0.185 0.815 28 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.680 -15.948 3.835 18.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.785 3.215 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.077 0.923 9 C 0.010 3.990 10 C -0.153 4.153 11 H 0.115 0.885 12 C -0.119 4.119 13 C -0.168 4.168 14 C -0.187 4.187 15 C -0.131 4.131 16 C -0.079 4.079 17 C -0.176 4.176 18 C 0.083 3.917 19 F -0.125 7.125 20 S 0.088 5.912 21 H 0.074 0.926 22 H 0.036 0.964 23 H 0.024 0.976 24 H 0.114 0.886 25 H 0.101 0.899 26 H 0.168 0.832 27 H 0.202 0.798 28 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 7.930 -14.752 4.490 17.339 hybrid contribution -0.760 0.206 -1.102 1.354 sum 7.170 -14.546 3.388 16.567 Atomic orbital electron populations 1.70057 1.07598 1.27995 1.51126 1.25841 0.95690 1.03005 0.94535 0.85569 0.78387 0.78438 0.79139 1.19067 1.20670 1.19562 1.21410 0.93262 0.91678 1.51124 0.92293 1.18909 0.92948 0.90675 0.96461 1.24089 0.99063 0.97346 0.94823 0.88488 1.20941 0.98820 0.90846 1.01278 1.20990 1.00233 0.93683 1.01904 1.22477 0.99112 0.97153 0.99934 1.20883 0.99087 0.93612 0.99520 1.21410 0.96418 0.93492 0.96560 1.21311 0.97254 1.01505 0.97490 1.17815 0.91730 0.89154 0.92968 1.91459 1.66361 1.85391 1.69340 1.86571 1.70576 1.00353 1.33689 0.92590 0.96365 0.97615 0.88622 0.89896 0.83240 0.79750 0.81354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.64 13.29 21.45 0.28 -55.36 15 2 C 0.01 0.45 5.46 84.65 0.46 0.91 15 3 Si 0.96 44.32 29.54 68.60 2.03 46.35 15 4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 15 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 6 H -0.27 -12.21 7.11 99.48 0.71 -11.51 15 7 C -0.54 -30.07 8.65 25.60 0.22 -29.85 15 8 H 0.06 3.24 7.72 -2.91 -0.02 3.21 15 9 C 0.05 2.49 4.46 29.85 0.13 2.62 15 10 C -0.02 -1.05 3.39 30.98 0.10 -0.94 15 11 H 0.10 3.98 8.14 -2.39 -0.02 3.96 15 12 C -0.08 -2.94 5.74 30.29 0.17 -2.76 15 13 C -0.16 -5.33 5.98 -19.28 -0.12 -5.45 15 14 C -0.07 -2.40 6.48 22.56 0.15 -2.25 15 15 C -0.11 -2.55 10.05 22.37 0.22 -2.33 15 16 C -0.06 -1.03 10.08 22.23 0.22 -0.80 15 17 C -0.15 -3.08 9.96 22.21 0.22 -2.86 15 18 C 0.10 2.90 7.30 22.58 0.16 3.07 15 19 F -0.15 -4.23 17.12 44.97 0.77 -3.46 15 20 S -0.16 -6.33 22.10 -56.49 -1.25 -7.58 15 21 H 0.27 15.01 8.31 -92.70 -0.77 14.24 15 22 H 0.02 0.99 8.14 -2.39 -0.02 0.97 15 23 H 0.01 0.31 8.14 -2.39 -0.02 0.29 15 24 H 0.10 3.17 8.14 -2.39 -0.02 3.15 15 25 H 0.08 3.15 7.86 -2.38 -0.02 3.13 15 26 H 0.15 2.97 8.06 -2.91 -0.02 2.94 15 27 H 0.19 1.49 8.06 -2.91 -0.02 1.46 15 28 H 0.17 2.22 8.06 -2.91 -0.02 2.20 15 Total: -1.00 -64.60 261.53 4.95 -59.64 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: 1.16 Total: 1.05 kcal Atomic # 6 Polarization: -42.60 SS G_CDS: 1.96 Total: -40.64 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.28 Total: -55.36 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.77 Total: -3.46 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: -6.33 SS G_CDS: -1.25 Total: -7.58 kcal Total: -64.60 4.95 -59.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260067017.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.475 kcal (2) G-P(sol) polarization free energy of solvation -64.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds