Wall clock time and date at job start Mon Mar 30 2020 05:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 110.67061 * 2 1 4 4 O 1.43772 * 110.75186 * 123.21971 * 2 1 3 5 5 C 1.36156 * 109.25610 * 146.17423 * 4 2 1 6 6 C 1.39281 * 129.86893 * 161.53750 * 5 4 2 7 7 C 1.37925 * 120.26225 * 179.41182 * 6 5 4 8 8 C 1.38389 * 120.33608 * 359.91224 * 7 6 5 9 9 Cl 1.73605 * 120.13093 * 179.87206 * 8 7 6 10 10 C 1.38450 * 119.73972 * 0.14764 * 8 7 6 11 11 C 1.37740 * 119.96444 * 0.04613 * 10 8 7 12 12 C 1.51651 * 132.15478 * 179.45288 * 11 10 8 13 13 H 1.09001 * 110.93620 * 313.87673 * 12 11 10 14 14 C 1.50700 * 110.94106 * 77.56256 * 12 11 10 15 15 H 1.08005 * 119.99557 * 107.11169 * 14 12 11 16 16 C 1.37871 * 120.00246 * 287.11820 * 14 12 11 17 17 N 1.31518 * 120.00033 * 359.97438 * 16 14 12 18 18 Si 1.86804 * 120.00170 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46761 * 60.00022 * 18 16 14 20 20 H 1.48491 * 109.47181 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46941 * 300.00056 * 18 16 14 22 22 H 1.09001 * 109.46723 * 305.62487 * 1 2 3 23 23 H 1.09001 * 109.47468 * 65.61982 * 1 2 3 24 24 H 1.08998 * 109.47564 * 185.62715 * 1 2 3 25 25 H 1.08003 * 119.86681 * 359.44091 * 6 5 4 26 26 H 1.08000 * 119.83401 * 179.88278 * 7 6 5 27 27 H 1.08002 * 120.01698 * 180.02562 * 10 8 7 28 28 H 0.97003 * 120.00115 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 8 2.0394 -0.7366 1.1247 5 6 3.1970 -1.3579 0.7675 6 6 4.2117 -1.8821 1.5646 7 6 5.3072 -2.4884 0.9860 8 6 5.4074 -2.5831 -0.3910 9 17 6.7902 -3.3443 -1.1138 10 6 4.4034 -2.0633 -1.1901 11 6 3.3110 -1.4541 -0.6132 12 6 2.0819 -0.7940 -1.2077 13 1 2.3554 -0.1236 -2.0224 14 6 1.0878 -1.8266 -1.6731 15 1 0.1765 -1.9883 -1.1164 16 6 1.3418 -2.5650 -2.8094 17 7 2.4513 -2.3678 -3.4874 18 14 0.1099 -3.8455 -3.3859 19 1 -1.1914 -3.1883 -3.6685 20 1 0.6140 -4.4960 -4.6219 21 1 -0.0724 -4.8695 -2.3260 22 1 -0.3633 0.5986 0.8354 23 1 -0.3634 0.4242 -0.9360 24 1 -0.3634 -1.0227 0.1008 25 1 4.1403 -1.8140 2.6401 26 1 6.0909 -2.8908 1.6106 27 1 4.4769 -2.1351 -2.2652 28 1 2.6298 -2.8871 -4.2871 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260129091.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:28 Heat of formation + Delta-G solvation = -32.240912 kcal Electronic energy + Delta-G solvation = -14832.816056 eV Core-core repulsion = 12260.258430 eV Total energy + Delta-G solvation = -2572.557626 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.90534 -38.59159 -36.98562 -35.57011 -33.15843 -31.77783 -30.69648 -28.01743 -26.25058 -23.33267 -22.42907 -21.95132 -18.94776 -17.84179 -17.60909 -16.86053 -16.47301 -16.00975 -14.92269 -14.80011 -14.49521 -14.25336 -13.84370 -13.67917 -13.26130 -13.02690 -12.83907 -12.67058 -12.53290 -12.14802 -12.09139 -11.82091 -11.56246 -11.11570 -10.96860 -10.59852 -9.64249 -8.83273 -8.14957 -6.26854 0.37916 0.54840 1.28743 1.41218 1.42720 1.48843 2.39377 2.48894 2.84211 3.15332 3.97999 4.08154 4.15985 4.26920 4.36793 4.40942 4.66807 4.80232 4.96655 5.05941 5.25210 5.27410 5.35826 5.44529 5.49660 5.69339 5.81055 5.87515 6.14523 6.39876 6.79302 7.39858 8.90045 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.019788 B = 0.011475 C = 0.007929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.688401 B = 2439.424999 C = 3530.280846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.074 3.926 3 H 0.082 0.918 4 O -0.314 6.314 5 C 0.076 3.924 6 C -0.136 4.136 7 C -0.090 4.090 8 C -0.079 4.079 9 Cl -0.077 7.077 10 C -0.071 4.071 11 C -0.129 4.129 12 C 0.050 3.950 13 H 0.031 0.969 14 C -0.523 4.523 15 H 0.075 0.925 16 C 0.022 3.978 17 N -0.904 5.904 18 Si 0.950 3.050 19 H -0.264 1.264 20 H -0.287 1.287 21 H -0.279 1.279 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.057 0.943 25 H 0.157 0.843 26 H 0.166 0.834 27 H 0.124 0.876 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.119 1.498 6.964 7.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.019 3.981 3 H 0.099 0.901 4 O -0.229 6.229 5 C 0.031 3.969 6 C -0.155 4.155 7 C -0.108 4.108 8 C -0.106 4.106 9 Cl -0.048 7.048 10 C -0.090 4.090 11 C -0.131 4.131 12 C 0.032 3.968 13 H 0.049 0.951 14 C -0.560 4.560 15 H 0.093 0.907 16 C -0.179 4.179 17 N -0.541 5.541 18 Si 0.776 3.224 19 H -0.189 1.189 20 H -0.212 1.212 21 H -0.205 1.205 22 H 0.090 0.910 23 H 0.098 0.902 24 H 0.076 0.924 25 H 0.175 0.825 26 H 0.183 0.817 27 H 0.142 0.858 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.196 1.391 6.931 7.758 hybrid contribution -0.330 -0.829 -1.112 1.426 sum 2.866 0.563 5.818 6.510 Atomic orbital electron populations 1.21711 0.91222 1.02637 1.02510 1.23587 0.96981 0.94051 0.83482 0.90054 1.86681 1.34547 1.62854 1.38813 1.20038 0.87850 0.95765 0.93292 1.20341 0.91595 1.03116 1.00447 1.20839 0.98557 0.99468 0.91931 1.20845 0.91372 1.04664 0.93693 1.98296 1.41766 1.80602 1.84134 1.20477 0.91711 0.96075 1.00701 1.21492 0.96035 1.01451 0.94103 1.19085 0.90089 0.94342 0.93310 0.95125 1.21384 1.04687 1.20449 1.09471 0.90738 1.25688 0.96906 0.98672 0.96611 1.69993 1.25407 1.41220 1.17526 0.85732 0.79886 0.79457 0.77366 1.18884 1.21227 1.20456 0.91019 0.90199 0.92398 0.82493 0.81672 0.85810 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.32 8.63 71.98 0.62 -3.70 15 2 C 0.07 2.99 4.15 31.17 0.13 3.12 15 3 H 0.08 2.94 8.14 -2.39 -0.02 2.92 15 4 O -0.31 -13.21 10.81 -95.33 -1.03 -14.24 15 5 C 0.08 3.23 7.04 22.67 0.16 3.39 15 6 C -0.14 -4.71 10.06 22.45 0.23 -4.48 15 7 C -0.09 -2.93 9.81 22.23 0.22 -2.72 15 8 C -0.08 -3.05 6.33 22.36 0.14 -2.91 15 9 Cl -0.08 -2.58 28.97 -2.72 -0.08 -2.66 15 10 C -0.07 -3.27 9.31 22.20 0.21 -3.06 15 11 C -0.13 -6.14 5.42 -19.53 -0.11 -6.25 15 12 C 0.05 2.45 2.79 -11.40 -0.03 2.42 15 13 H 0.03 1.63 8.12 -2.39 -0.02 1.61 15 14 C -0.52 -27.18 7.87 25.60 0.20 -26.98 15 15 H 0.07 3.76 5.31 -2.91 -0.02 3.74 15 16 C 0.02 1.17 5.40 84.65 0.46 1.63 15 17 N -0.90 -49.86 11.26 21.45 0.24 -49.62 15 18 Si 0.95 42.47 29.54 68.60 2.03 44.50 15 19 H -0.26 -11.25 7.11 99.48 0.71 -10.54 15 20 H -0.29 -12.75 7.11 99.48 0.71 -12.05 15 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 22 H 0.07 2.04 8.14 -2.39 -0.02 2.02 15 23 H 0.08 2.68 8.14 -2.39 -0.02 2.66 15 24 H 0.06 2.20 6.15 -2.39 -0.01 2.19 15 25 H 0.16 4.27 8.06 -2.91 -0.02 4.25 15 26 H 0.17 4.08 8.06 -2.91 -0.02 4.05 15 27 H 0.12 6.33 6.68 -2.91 -0.02 6.31 15 28 H 0.26 13.96 8.31 -92.71 -0.77 13.19 15 Total: -1.00 -57.57 253.82 4.56 -53.01 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 1.18 Total: 8.55 kcal Atomic # 6 Polarization: -41.76 SS G_CDS: 2.22 Total: -39.54 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.24 Total: -49.62 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -1.03 Total: -14.24 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 17 Polarization: -2.58 SS G_CDS: -0.08 Total: -2.66 kcal Total: -57.57 4.56 -53.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260129091.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.768 kcal (2) G-P(sol) polarization free energy of solvation -57.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds