Wall clock time and date at job start Mon Mar 30 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09010 * 110.66425 * 2 1 4 4 O 1.43775 * 110.90878 * 236.67365 * 2 1 3 5 5 C 1.36162 * 109.23122 * 269.36050 * 4 2 1 6 6 C 1.39283 * 129.86884 * 161.56921 * 5 4 2 7 7 C 1.37924 * 120.25603 * 179.33039 * 6 5 4 8 8 C 1.38388 * 120.33668 * 359.47551 * 7 6 5 9 9 Cl 1.73603 * 120.13338 * 180.37917 * 8 7 6 10 10 C 1.38453 * 119.73805 * 0.66093 * 8 7 6 11 11 C 1.37735 * 119.96784 * 359.73596 * 10 8 7 12 12 C 1.51646 * 132.15888 * 179.53296 * 11 10 8 13 13 H 1.09008 * 110.93865 * 313.70318 * 12 11 10 14 14 C 1.50699 * 110.94060 * 77.38319 * 12 11 10 15 15 H 1.08001 * 120.00290 * 118.54675 * 14 12 11 16 16 C 1.37878 * 120.00115 * 298.55271 * 14 12 11 17 17 N 1.31520 * 119.99838 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00046 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47001 * 90.00149 * 18 16 14 20 20 H 1.48507 * 109.46985 * 209.99665 * 18 16 14 21 21 H 1.48494 * 109.47412 * 329.99784 * 18 16 14 22 22 H 1.09002 * 109.47388 * 296.78264 * 1 2 3 23 23 H 1.08998 * 109.47632 * 56.78244 * 1 2 3 24 24 H 1.09004 * 109.46953 * 176.78401 * 1 2 3 25 25 H 1.08002 * 119.86971 * 359.04390 * 6 5 4 26 26 H 1.07996 * 119.83429 * 179.71660 * 7 6 5 27 27 H 1.07997 * 120.01243 * 179.72190 * 10 8 7 28 28 H 0.97002 * 120.00061 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0200 0.0000 4 8 2.0431 -0.7379 -1.1222 5 6 2.2165 -2.0394 -0.7617 6 6 2.3528 -3.1754 -1.5561 7 6 2.5350 -4.4125 -0.9742 8 6 2.5949 -4.5352 0.4029 9 17 2.8342 -6.0937 1.1294 10 6 2.4573 -3.4110 1.1992 11 6 2.2672 -2.1762 0.6194 12 6 2.0782 -0.7925 1.2103 13 1 1.3529 -0.8121 2.0238 14 6 3.3926 -0.2219 1.6769 15 1 3.7736 0.6874 1.2360 16 6 4.1090 -0.8609 2.6667 17 7 3.6449 -1.9680 3.2039 18 14 5.7386 -0.1540 3.2446 19 1 5.4995 0.7859 4.3692 20 1 6.6226 -1.2568 3.7006 21 1 6.3893 0.5706 2.1236 22 1 -0.3634 0.4631 0.9174 23 1 -0.3634 0.5629 -0.8597 24 1 -0.3633 -1.0261 -0.0577 25 1 2.3111 -3.0877 -2.6317 26 1 2.6353 -5.2894 -1.5965 27 1 2.4988 -3.5023 2.2745 28 1 4.1486 -2.4173 3.9005 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260129093.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:30 Heat of formation + Delta-G solvation = -21.392817 kcal Electronic energy + Delta-G solvation = -14885.670904 eV Core-core repulsion = 12313.583687 eV Total energy + Delta-G solvation = -2572.087217 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.29095 -36.96027 -35.40669 -33.64897 -31.40685 -29.90828 -29.01835 -27.05436 -23.82111 -21.92341 -20.82408 -20.32568 -16.85937 -16.14153 -15.83086 -15.26249 -14.73012 -14.57607 -13.15139 -13.08611 -12.85119 -12.54436 -12.31260 -11.98534 -11.68818 -11.43822 -11.38769 -10.89115 -10.82039 -10.55583 -10.49611 -10.14905 -9.90564 -9.46262 -9.38895 -8.64708 -7.90726 -7.16234 -6.18637 -4.28797 2.05870 2.23056 2.89091 3.22122 3.29859 3.32873 4.13136 4.28045 4.56201 5.10757 5.54119 5.59294 5.69525 5.76555 5.80108 6.07900 6.19103 6.22426 6.34199 6.56133 6.64073 6.89205 6.96295 7.21138 7.24606 7.42307 7.68756 7.75563 8.00838 8.08326 8.71473 9.36800 10.84310 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.017870 B = 0.012395 C = 0.008287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.493571 B = 2258.348433 C = 3377.826590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.072 3.928 3 H 0.105 0.895 4 O -0.306 6.306 5 C 0.092 3.908 6 C -0.152 4.152 7 C -0.104 4.104 8 C -0.079 4.079 9 Cl -0.098 7.098 10 C -0.038 4.038 11 C -0.094 4.094 12 C 0.062 3.938 13 H 0.053 0.947 14 C -0.513 4.513 15 H 0.065 0.935 16 C 0.068 3.932 17 N -0.879 5.879 18 Si 0.899 3.101 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.273 1.273 22 H 0.070 0.930 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.119 0.881 26 H 0.123 0.877 27 H 0.161 0.839 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.920 -2.329 -4.517 6.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.016 3.984 3 H 0.123 0.877 4 O -0.221 6.221 5 C 0.047 3.953 6 C -0.171 4.171 7 C -0.123 4.123 8 C -0.105 4.105 9 Cl -0.070 7.070 10 C -0.057 4.057 11 C -0.096 4.096 12 C 0.044 3.956 13 H 0.071 0.929 14 C -0.550 4.550 15 H 0.083 0.917 16 C -0.136 4.136 17 N -0.516 5.516 18 Si 0.726 3.274 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.198 1.198 22 H 0.089 0.911 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.137 0.863 26 H 0.141 0.859 27 H 0.179 0.821 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.815 -2.473 -4.515 6.408 hybrid contribution 1.073 0.088 0.497 1.186 sum -2.742 -2.385 -4.018 5.418 Atomic orbital electron populations 1.22219 0.96055 1.02180 1.01806 1.23605 0.92519 0.96780 0.85464 0.87682 1.86743 1.79905 1.16638 1.38776 1.19765 0.96810 0.85033 0.93694 1.19839 1.09250 0.89268 0.98723 1.20381 1.02576 0.96689 0.92653 1.20767 1.10941 0.86062 0.92768 1.98286 1.95900 1.28730 1.84058 1.20877 0.94101 0.88489 1.02252 1.21255 0.99432 0.96421 0.92470 1.19116 0.97665 0.86396 0.92448 0.92921 1.20983 1.04625 1.09596 1.19804 0.91698 1.24959 0.98096 0.94657 0.95843 1.69776 1.38758 1.16956 1.26081 0.86465 0.83115 0.78765 0.79012 1.20419 1.20974 1.19786 0.91119 0.92762 0.92556 0.86262 0.85924 0.82145 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 9.52 37.16 0.35 -2.39 15 2 C 0.07 1.46 3.84 -25.84 -0.10 1.36 15 3 H 0.11 2.04 7.77 -51.92 -0.40 1.63 15 4 O -0.31 -6.69 10.83 -20.26 -0.22 -6.91 15 5 C 0.09 2.04 6.92 -38.96 -0.27 1.77 15 6 C -0.15 -2.93 10.06 -39.31 -0.40 -3.32 15 7 C -0.10 -1.93 9.81 -39.64 -0.39 -2.31 15 8 C -0.08 -1.60 6.33 -39.45 -0.25 -1.85 15 9 Cl -0.10 -1.77 28.97 -51.86 -1.50 -3.27 15 10 C -0.04 -0.88 8.71 -39.69 -0.35 -1.23 15 11 C -0.09 -2.23 5.25 -104.10 -0.55 -2.77 15 12 C 0.06 1.48 2.60 -91.56 -0.24 1.24 15 13 H 0.05 1.30 7.92 -51.92 -0.41 0.89 15 14 C -0.51 -13.39 8.61 -34.44 -0.30 -13.68 15 15 H 0.06 1.68 7.60 -52.49 -0.40 1.28 15 16 C 0.07 1.78 5.33 -17.82 -0.10 1.68 15 17 N -0.88 -23.34 9.88 55.43 0.55 -22.79 15 18 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 15 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 22 H 0.07 1.07 8.14 -51.93 -0.42 0.64 15 23 H 0.05 0.79 8.14 -51.93 -0.42 0.36 15 24 H 0.06 0.96 8.08 -51.93 -0.42 0.54 15 25 H 0.12 1.97 8.06 -52.49 -0.42 1.54 15 26 H 0.12 1.89 8.06 -52.49 -0.42 1.47 15 27 H 0.16 3.96 6.12 -52.49 -0.32 3.63 15 28 H 0.27 6.79 8.31 -40.82 -0.34 6.46 15 LS Contribution 255.68 15.07 3.85 3.85 Total: -1.00 -26.78 255.68 -7.69 -34.47 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -2.78 Total: 0.53 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -2.57 Total: -21.51 kcal Atomic # 7 Polarization: -23.34 SS G_CDS: 0.55 Total: -22.79 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.22 Total: -6.91 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -1.50 Total: -3.27 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -26.78 -7.69 -34.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260129093.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.079 kcal (2) G-P(sol) polarization free energy of solvation -26.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds