Wall clock time and date at job start Mon Mar 30 2020 05:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.80957 * 2 1 4 4 O 1.43765 * 110.74881 * 236.68532 * 2 1 3 5 5 C 1.36160 * 109.25500 * 214.00266 * 4 2 1 6 6 C 1.39280 * 129.86743 * 198.45715 * 5 4 2 7 7 C 1.37936 * 120.25756 * 180.58952 * 6 5 4 8 8 C 1.38387 * 120.33570 * 0.11782 * 7 6 5 9 9 Cl 1.73601 * 120.12726 * 179.55061 * 8 7 6 10 10 C 1.38443 * 119.74090 * 359.82421 * 8 7 6 11 11 C 1.37744 * 119.96877 * 359.95955 * 10 8 7 12 12 C 1.51653 * 132.15820 * 180.54005 * 11 10 8 13 13 H 1.08995 * 110.96995 * 46.13056 * 12 11 10 14 14 C 1.50704 * 110.93764 * 282.45308 * 12 11 10 15 15 H 1.07995 * 119.99863 * 312.29331 * 14 12 11 16 16 C 1.37876 * 119.99550 * 132.28926 * 14 12 11 17 17 N 1.31520 * 120.00124 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99702 * 180.02562 * 16 14 12 19 19 H 1.48491 * 109.47222 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46841 * 120.00101 * 18 16 14 21 21 H 1.48504 * 109.47068 * 239.99724 * 18 16 14 22 22 H 1.08997 * 109.47137 * 177.13601 * 1 2 3 23 23 H 1.08994 * 109.47254 * 297.14102 * 1 2 3 24 24 H 1.09005 * 109.46866 * 57.13979 * 1 2 3 25 25 H 1.08000 * 119.87301 * 0.57343 * 6 5 4 26 26 H 1.07998 * 119.83003 * 180.10054 * 7 6 5 27 27 H 1.08002 * 120.01725 * 179.97438 * 10 8 7 28 28 H 0.97000 * 119.99755 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 8 2.0394 -0.7384 -1.1235 5 6 3.1950 -1.3624 -0.7641 6 6 4.2096 -1.8896 -1.5594 7 6 5.3027 -2.4982 -0.9785 8 6 5.4003 -2.5928 0.3986 9 17 6.7728 -3.3703 1.1236 10 6 4.3963 -2.0701 1.1958 11 6 3.3065 -1.4581 0.6169 12 6 2.0780 -0.7946 1.2090 13 1 2.3513 -0.1245 2.0241 14 6 1.0807 -1.8246 1.6733 15 1 0.8123 -2.6465 1.0262 16 6 0.5109 -1.7176 2.9243 17 7 0.8375 -0.7164 3.7121 18 14 -0.7248 -2.9946 3.5001 19 1 -0.9185 -4.0113 2.4353 20 1 -0.2169 -3.6559 4.7289 21 1 -2.0208 -2.3319 3.7942 22 1 -0.3633 -1.0263 -0.0513 23 1 -0.3633 0.4688 0.9144 24 1 -0.3633 0.5576 -0.8633 25 1 4.1401 -1.8219 -2.6350 26 1 6.0862 -2.9032 -1.6018 27 1 4.4677 -2.1418 2.2711 28 1 0.4370 -0.6413 4.5924 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260129094.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:32 Heat of formation + Delta-G solvation = -37.028780 kcal Electronic energy + Delta-G solvation = -14669.813799 eV Core-core repulsion = 12097.048556 eV Total energy + Delta-G solvation = -2572.765244 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.94964 -38.67020 -37.04875 -35.60698 -33.17006 -31.81900 -30.76522 -28.10240 -26.26597 -23.42497 -22.47104 -21.97337 -19.02032 -17.92255 -17.55115 -17.05148 -16.45439 -16.06264 -15.06718 -14.81748 -14.43440 -14.38247 -13.81990 -13.71997 -13.44865 -12.97659 -12.84818 -12.71095 -12.49065 -12.16718 -12.08597 -11.92603 -11.47385 -11.32093 -11.07246 -10.66534 -9.81603 -8.91748 -8.20474 -6.31126 0.28782 0.40786 1.21076 1.37074 1.41132 1.51564 2.36413 2.45931 2.75114 3.06219 3.82408 4.00571 4.19623 4.29911 4.31427 4.38226 4.64993 4.68278 4.95779 5.02477 5.21296 5.25068 5.30721 5.37802 5.53912 5.61041 5.65169 5.72489 6.12072 6.35722 6.77856 7.33402 8.85343 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.023454 B = 0.009098 C = 0.007177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.536745 B = 3076.916403 C = 3900.490021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.072 3.928 3 H 0.073 0.927 4 O -0.315 6.315 5 C 0.082 3.918 6 C -0.130 4.130 7 C -0.083 4.083 8 C -0.068 4.068 9 Cl -0.069 7.069 10 C -0.081 4.081 11 C -0.148 4.148 12 C 0.038 3.962 13 H 0.061 0.939 14 C -0.500 4.500 15 H 0.044 0.956 16 C 0.029 3.971 17 N -0.918 5.918 18 Si 0.950 3.050 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.273 1.273 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.159 0.841 26 H 0.171 0.829 27 H 0.116 0.884 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.399 -1.570 -7.354 9.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.016 3.984 3 H 0.090 0.910 4 O -0.230 6.230 5 C 0.036 3.964 6 C -0.149 4.149 7 C -0.101 4.101 8 C -0.095 4.095 9 Cl -0.040 7.040 10 C -0.100 4.100 11 C -0.149 4.149 12 C 0.019 3.981 13 H 0.080 0.920 14 C -0.538 4.538 15 H 0.062 0.938 16 C -0.171 4.171 17 N -0.556 5.556 18 Si 0.775 3.225 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.198 1.198 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.177 0.823 26 H 0.188 0.812 27 H 0.134 0.866 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.340 -1.547 -7.307 9.797 hybrid contribution -0.604 -0.520 1.094 1.354 sum 5.736 -2.066 -6.213 8.704 Atomic orbital electron populations 1.21462 0.91682 1.02436 1.01052 1.23707 0.96729 0.93726 0.84246 0.90968 1.86695 1.34685 1.62547 1.39054 1.20063 0.87934 0.95232 0.93149 1.20426 0.91332 1.02450 1.00672 1.20910 0.98344 0.98814 0.92040 1.20689 0.91322 1.03903 0.93599 1.98318 1.42279 1.79572 1.83821 1.20140 0.92273 0.97726 0.99859 1.21563 0.96662 1.01785 0.94910 1.19275 0.89484 0.94980 0.94320 0.92033 1.20805 1.22957 1.09594 1.00419 0.93751 1.25604 0.98042 0.97040 0.96405 1.69978 1.44313 1.31513 1.09790 0.85625 0.79213 0.79452 0.78216 1.19511 1.20610 1.19796 0.92534 0.91809 0.91680 0.82316 0.81193 0.86619 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.39 8.78 71.98 0.63 -3.75 15 2 C 0.07 3.09 4.16 31.18 0.13 3.22 15 3 H 0.07 2.89 8.14 -2.39 -0.02 2.87 15 4 O -0.32 -13.40 10.81 -95.38 -1.03 -14.43 15 5 C 0.08 3.33 7.04 22.67 0.16 3.49 15 6 C -0.13 -4.12 10.06 22.45 0.23 -3.90 15 7 C -0.08 -2.38 9.81 22.23 0.22 -2.16 15 8 C -0.07 -2.29 6.33 22.35 0.14 -2.15 15 9 Cl -0.07 -1.97 28.97 -2.72 -0.08 -2.05 15 10 C -0.08 -3.31 9.82 22.20 0.22 -3.09 15 11 C -0.15 -6.62 5.61 -19.52 -0.11 -6.73 15 12 C 0.04 1.89 3.27 -11.40 -0.04 1.85 15 13 H 0.06 3.36 7.06 -2.39 -0.02 3.34 15 14 C -0.50 -26.51 6.30 25.60 0.16 -26.35 15 15 H 0.04 2.44 7.78 -2.91 -0.02 2.42 15 16 C 0.03 1.55 5.46 84.65 0.46 2.01 15 17 N -0.92 -50.68 12.67 21.45 0.27 -50.41 15 18 Si 0.95 42.21 29.54 68.60 2.03 44.23 15 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 15 21 H -0.27 -11.68 7.11 99.48 0.71 -10.98 15 22 H 0.06 2.43 7.01 -2.39 -0.02 2.41 15 23 H 0.06 2.67 8.14 -2.39 -0.02 2.65 15 24 H 0.06 2.16 8.14 -2.38 -0.02 2.14 15 25 H 0.16 3.94 8.06 -2.91 -0.02 3.92 15 26 H 0.17 3.52 8.06 -2.91 -0.02 3.50 15 27 H 0.12 4.89 8.06 -2.91 -0.02 4.87 15 28 H 0.27 13.97 8.31 -92.71 -0.77 13.20 15 Total: -1.00 -57.29 258.70 4.56 -52.74 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.17 Total: 7.49 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: 2.20 Total: -37.57 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.27 Total: -50.41 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -1.03 Total: -14.43 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -0.08 Total: -2.05 kcal Total: -57.29 4.56 -52.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260129094.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.706 kcal (2) G-P(sol) polarization free energy of solvation -57.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds