Wall clock time and date at job start Mon Mar 30 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.66764 * 2 1 4 4 O 1.43772 * 110.74908 * 123.20922 * 2 1 3 5 5 C 1.36161 * 109.25564 * 90.83703 * 4 2 1 6 6 C 1.39285 * 129.86783 * 198.46551 * 5 4 2 7 7 C 1.37931 * 120.25575 * 180.60504 * 6 5 4 8 8 C 1.38385 * 120.33963 * 0.34660 * 7 6 5 9 9 Cl 1.73598 * 120.13070 * 179.56740 * 8 7 6 10 10 C 1.38449 * 119.73361 * 359.30265 * 8 7 6 11 11 C 1.37740 * 119.97221 * 0.51337 * 10 8 7 12 12 C 1.51652 * 132.15920 * 180.25220 * 11 10 8 13 13 H 1.09001 * 110.96527 * 46.11710 * 12 11 10 14 14 C 1.50695 * 110.94160 * 282.44299 * 12 11 10 15 15 H 1.08005 * 120.00296 * 247.46761 * 14 12 11 16 16 C 1.37876 * 120.00165 * 67.46049 * 14 12 11 17 17 N 1.31513 * 119.99844 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 120.00404 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47009 * 60.00039 * 18 16 14 20 20 H 1.48494 * 109.47371 * 180.02562 * 18 16 14 21 21 H 1.48511 * 109.46897 * 300.00666 * 18 16 14 22 22 H 1.09005 * 109.47137 * 298.24270 * 1 2 3 23 23 H 1.08997 * 109.47110 * 58.24694 * 1 2 3 24 24 H 1.08998 * 109.47376 * 178.24544 * 1 2 3 25 25 H 1.07997 * 119.87221 * 0.57929 * 6 5 4 26 26 H 1.08002 * 119.82606 * 180.02562 * 7 6 5 27 27 H 1.08008 * 120.01032 * 180.20907 * 10 8 7 28 28 H 0.97010 * 120.00083 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 8 2.0393 -0.7364 1.1249 5 6 2.2160 -2.0381 0.7667 6 6 2.3498 -3.1730 1.5630 7 6 2.5348 -4.4108 0.9834 8 6 2.5963 -4.5358 -0.3934 9 17 2.8406 -6.0949 -1.1168 10 6 2.4568 -3.4133 -1.1917 11 6 2.2683 -2.1772 -0.6141 12 6 2.0821 -0.7941 -1.2074 13 1 1.3599 -0.8139 -2.0237 14 6 3.3984 -0.2247 -1.6701 15 1 3.8255 0.6285 -1.1641 16 6 4.0577 -0.7932 -2.7392 17 7 3.5376 -1.8319 -3.3557 18 14 5.6898 -0.0879 -3.3123 19 1 6.6759 -0.1584 -2.2042 20 1 6.1888 -0.8724 -4.4702 21 1 5.5019 1.3282 -3.7183 22 1 -0.3634 0.4863 0.9054 23 1 -0.3633 0.5408 -0.8738 24 1 -0.3634 -1.0271 -0.0315 25 1 2.3089 -3.0833 2.6385 26 1 2.6373 -5.2863 1.6075 27 1 2.5008 -3.5062 -2.2669 28 1 4.0017 -2.2322 -4.1077 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260129097.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:35 Heat of formation + Delta-G solvation = -37.001509 kcal Electronic energy + Delta-G solvation = -14851.607011 eV Core-core repulsion = 12278.842950 eV Total energy + Delta-G solvation = -2572.764061 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.94201 -38.55830 -36.95517 -35.48863 -33.16866 -31.50190 -30.67845 -28.76732 -25.63907 -23.53855 -22.44849 -22.02187 -18.74486 -17.81722 -17.48713 -16.84080 -16.47665 -16.37304 -14.84391 -14.68421 -14.45731 -14.14291 -13.93479 -13.55569 -13.35962 -13.05603 -13.03983 -12.66486 -12.53043 -12.24719 -12.08819 -11.89421 -11.54124 -11.21964 -11.06360 -10.62474 -9.61275 -8.81818 -8.17022 -6.32039 0.40622 0.58157 1.31226 1.40005 1.41428 1.48122 2.37469 2.52908 2.87226 3.12118 3.99783 4.02738 4.17638 4.26674 4.34903 4.44216 4.65215 4.78842 4.83626 5.06150 5.18034 5.27585 5.33307 5.42371 5.51581 5.71442 5.74411 5.92754 6.10301 6.39795 6.73260 7.35008 8.85726 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.017929 B = 0.012129 C = 0.008198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.358204 B = 2307.965449 C = 3414.533074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.073 3.927 3 H 0.110 0.890 4 O -0.314 6.314 5 C 0.077 3.923 6 C -0.140 4.140 7 C -0.090 4.090 8 C -0.082 4.082 9 Cl -0.078 7.078 10 C -0.067 4.067 11 C -0.124 4.124 12 C 0.055 3.945 13 H 0.033 0.967 14 C -0.534 4.534 15 H 0.059 0.941 16 C 0.025 3.975 17 N -0.898 5.898 18 Si 0.952 3.048 19 H -0.279 1.279 20 H -0.283 1.283 21 H -0.266 1.266 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.047 0.953 25 H 0.156 0.844 26 H 0.164 0.836 27 H 0.130 0.870 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.705 -3.008 6.442 8.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.018 3.982 3 H 0.128 0.872 4 O -0.228 6.228 5 C 0.032 3.968 6 C -0.159 4.159 7 C -0.109 4.109 8 C -0.108 4.108 9 Cl -0.049 7.049 10 C -0.086 4.086 11 C -0.125 4.125 12 C 0.036 3.964 13 H 0.051 0.949 14 C -0.571 4.571 15 H 0.077 0.923 16 C -0.176 4.176 17 N -0.535 5.535 18 Si 0.778 3.222 19 H -0.204 1.204 20 H -0.208 1.208 21 H -0.191 1.191 22 H 0.098 0.902 23 H 0.101 0.899 24 H 0.066 0.934 25 H 0.173 0.827 26 H 0.182 0.818 27 H 0.148 0.852 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.627 -3.139 6.420 8.014 hybrid contribution 1.021 0.168 -1.003 1.441 sum -2.606 -2.971 5.417 6.705 Atomic orbital electron populations 1.22131 0.93155 1.02299 1.03630 1.23674 0.94823 0.96248 0.83476 0.87188 1.86706 1.80444 1.16789 1.38892 1.20044 0.97631 0.85814 0.93346 1.20327 1.06863 0.88328 1.00387 1.20827 1.00166 0.97886 0.91994 1.20860 1.10123 0.86198 0.93658 1.98292 1.95654 1.26828 1.84120 1.20616 0.96965 0.89936 1.01103 1.21368 1.00931 0.96393 0.93856 1.19058 0.96415 0.87600 0.93311 0.94896 1.21229 1.06151 1.14828 1.14865 0.92317 1.25646 1.00675 0.95099 0.96189 1.69942 1.39755 1.22171 1.21609 0.85692 0.79966 0.78909 0.77623 1.20449 1.20790 1.19053 0.90160 0.89868 0.93399 0.82661 0.81834 0.85202 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.96 9.51 71.98 0.68 -4.28 15 2 C 0.07 2.95 3.83 31.17 0.12 3.07 15 3 H 0.11 4.24 7.79 -2.39 -0.02 4.22 15 4 O -0.31 -13.30 10.82 -95.39 -1.03 -14.33 15 5 C 0.08 3.29 6.96 22.67 0.16 3.45 15 6 C -0.14 -4.92 10.06 22.45 0.23 -4.70 15 7 C -0.09 -3.01 9.81 22.23 0.22 -2.79 15 8 C -0.08 -3.18 6.33 22.36 0.14 -3.04 15 9 Cl -0.08 -2.64 28.97 -2.72 -0.08 -2.72 15 10 C -0.07 -3.12 9.03 22.20 0.20 -2.92 15 11 C -0.12 -5.90 5.33 -19.53 -0.10 -6.00 15 12 C 0.05 2.67 2.50 -11.40 -0.03 2.64 15 13 H 0.03 1.72 7.93 -2.39 -0.02 1.70 15 14 C -0.53 -28.52 8.53 25.60 0.22 -28.30 15 15 H 0.06 3.10 7.63 -2.91 -0.02 3.07 15 16 C 0.03 1.35 5.37 84.65 0.45 1.81 15 17 N -0.90 -49.30 10.58 21.45 0.23 -49.08 15 18 Si 0.95 42.79 29.54 68.60 2.03 44.82 15 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 15 20 H -0.28 -12.47 7.11 99.48 0.71 -11.77 15 21 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 22 H 0.08 2.15 8.14 -2.38 -0.02 2.13 15 23 H 0.08 2.42 8.14 -2.39 -0.02 2.40 15 24 H 0.05 1.60 8.13 -2.39 -0.02 1.58 15 25 H 0.16 4.33 8.06 -2.91 -0.02 4.31 15 26 H 0.16 4.14 8.06 -2.91 -0.02 4.11 15 27 H 0.13 6.64 6.36 -2.91 -0.02 6.62 15 28 H 0.26 13.97 8.31 -92.70 -0.77 13.20 15 Total: -1.00 -57.98 257.02 4.60 -53.39 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 1.17 Total: 8.98 kcal Atomic # 6 Polarization: -43.35 SS G_CDS: 2.29 Total: -41.07 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.23 Total: -49.08 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -1.03 Total: -14.33 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 17 Polarization: -2.64 SS G_CDS: -0.08 Total: -2.72 kcal Total: -57.98 4.60 -53.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260129097.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.384 kcal (2) G-P(sol) polarization free energy of solvation -57.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds