Wall clock time and date at job start Mon Mar 30 2020 05:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 119.82513 * 2 1 4 4 C 1.38268 * 120.12297 * 179.97438 * 3 2 1 5 5 F 1.35104 * 120.11362 * 180.02562 * 4 3 2 6 6 C 1.39921 * 119.77707 * 0.27890 * 4 3 2 7 7 C 1.47561 * 120.17406 * 179.72367 * 6 4 3 8 8 O 1.21486 * 120.00279 * 359.97438 * 7 6 4 9 9 O 1.34730 * 119.99693 * 179.97438 * 7 6 4 10 10 C 1.39679 * 119.64940 * 359.42514 * 6 4 3 11 11 C 1.37882 * 119.87493 * 0.59737 * 10 6 4 12 12 C 1.50694 * 119.88577 * 179.69737 * 11 10 6 13 13 C 1.50707 * 109.47356 * 264.97447 * 12 11 10 14 14 H 1.07998 * 119.99694 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99823 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00334 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99409 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47221 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46672 * 120.00291 * 17 15 13 20 20 H 1.48499 * 109.47127 * 239.99894 * 17 15 13 21 21 H 1.09002 * 109.47217 * 89.99806 * 1 2 3 22 22 H 1.08998 * 109.46773 * 209.99508 * 1 2 3 23 23 H 1.08991 * 109.46936 * 329.99572 * 1 2 3 24 24 H 1.07999 * 119.93468 * 0.02562 * 3 2 1 25 25 H 0.96704 * 117.00156 * 180.02562 * 9 7 6 26 26 H 1.08006 * 120.06325 * 180.31920 * 10 6 4 27 27 H 1.09003 * 109.47472 * 24.98243 * 12 11 10 28 28 H 1.09006 * 109.46931 * 144.97869 * 12 11 10 29 29 H 0.97002 * 120.00081 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1994 0.0000 4 6 3.5773 1.2066 0.0005 5 9 4.2490 2.3788 0.0011 6 6 4.2785 -0.0042 -0.0048 7 6 5.7541 -0.0067 -0.0105 8 8 6.3634 1.0443 -0.0109 9 8 6.4256 -1.1747 -0.0151 10 6 3.5743 -1.2105 0.0015 11 6 2.1955 -1.2009 0.0005 12 6 1.4356 -2.5022 0.0004 13 6 1.0758 -2.8738 -1.4151 14 1 1.3685 -2.2320 -2.2329 15 6 0.3729 -4.0331 -1.6660 16 7 0.0159 -4.8143 -0.6702 17 14 -0.0725 -4.4939 -3.4207 18 1 0.4415 -3.4566 -4.3506 19 1 0.5366 -5.8057 -3.7576 20 1 -1.5490 -4.5863 -3.5487 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 1.6507 2.1324 0.0004 25 1 7.3914 -1.1258 -0.0183 26 1 4.1088 -2.1490 0.0026 27 1 2.0564 -3.2856 0.4352 28 1 0.5252 -2.3913 0.5895 29 1 -0.4783 -5.6301 -0.8468 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260136908.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:22 Heat of formation + Delta-G solvation = -128.371223 kcal Electronic energy + Delta-G solvation = -16363.850544 eV Core-core repulsion = 13358.788020 eV Total energy + Delta-G solvation = -3005.062524 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.57722 -40.06814 -38.68578 -35.90521 -33.61810 -32.50273 -31.18611 -27.80622 -26.84603 -23.42665 -23.11329 -21.88707 -19.86222 -17.90644 -17.17150 -16.47470 -16.16790 -15.86296 -15.71273 -14.92899 -14.65725 -14.02107 -13.45665 -13.34245 -13.11459 -12.91390 -12.31123 -11.86896 -11.63213 -11.49967 -11.25196 -11.13453 -11.03484 -10.66826 -10.64534 -10.25535 -9.72647 -9.53973 -8.65211 -8.52126 -7.95156 -6.15167 -4.19587 0.90167 1.61368 2.75719 3.14562 3.23027 3.31846 3.35944 3.99154 4.37040 4.45725 4.93656 5.19895 5.23071 5.36730 5.55482 5.62402 5.92647 6.06496 6.15846 6.33084 6.48120 6.52915 6.60949 6.66734 6.86981 7.21089 7.44048 7.58851 7.80267 8.03552 8.16951 8.85295 9.45362 10.94496 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.027922 B = 0.007003 C = 0.006167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.548857 B = 3997.122271 C = 4539.285004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.018 4.018 3 C -0.173 4.173 4 C 0.138 3.862 5 F -0.128 7.128 6 C -0.180 4.180 7 C 0.531 3.469 8 O -0.516 6.516 9 O -0.508 6.508 10 C -0.034 4.034 11 C -0.063 4.063 12 C 0.048 3.952 13 C -0.513 4.513 14 H 0.058 0.942 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 H 0.081 0.919 22 H 0.087 0.913 23 H 0.057 0.943 24 H 0.136 0.864 25 H 0.410 0.590 26 H 0.144 0.856 27 H 0.032 0.968 28 H 0.039 0.961 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.874 7.448 2.096 9.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.019 4.019 3 C -0.192 4.192 4 C 0.118 3.882 5 F -0.106 7.106 6 C -0.182 4.182 7 C 0.376 3.624 8 O -0.406 6.406 9 O -0.319 6.319 10 C -0.053 4.053 11 C -0.063 4.063 12 C 0.012 3.988 13 C -0.552 4.552 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 H 0.099 0.901 22 H 0.106 0.894 23 H 0.076 0.924 24 H 0.154 0.846 25 H 0.268 0.732 26 H 0.162 0.838 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.542 7.592 2.136 9.102 hybrid contribution 0.594 -0.091 -1.023 1.186 sum 5.136 7.501 1.114 9.159 Atomic orbital electron populations 1.20905 0.90051 1.02871 1.03408 1.19992 0.97098 0.91368 0.93406 1.20893 0.91236 0.99577 1.07443 1.17490 0.89810 0.79906 1.00979 1.91529 1.80553 1.45148 1.93367 1.18995 0.89205 0.94118 1.15857 1.20726 0.88639 0.80943 0.72076 1.90899 1.70136 1.32867 1.46735 1.84613 1.26387 1.34992 1.85938 1.21338 0.94091 0.96291 0.93549 1.20670 0.93095 0.97619 0.94941 1.18430 0.95067 0.87124 0.98180 1.21027 1.35693 1.06800 0.91637 0.92385 1.24974 0.95671 0.96205 0.97184 1.69947 1.38811 1.13432 1.30813 0.86504 0.78173 0.78537 0.84678 1.19655 1.20897 1.20901 0.90056 0.89428 0.92424 0.84573 0.73200 0.83813 0.95008 0.94263 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 9.59 36.01 0.35 -1.47 15 2 C -0.02 -0.32 5.88 -104.54 -0.62 -0.94 15 3 C -0.17 -2.77 9.66 -39.56 -0.38 -3.15 15 4 C 0.14 2.41 7.29 -38.94 -0.28 2.13 15 5 F -0.13 -2.31 15.55 2.25 0.04 -2.28 15 6 C -0.18 -3.19 5.88 -104.93 -0.62 -3.81 15 7 C 0.53 8.89 8.27 34.53 0.29 9.18 15 8 O -0.52 -9.72 16.13 -19.26 -0.31 -10.03 15 9 O -0.51 -6.73 12.68 -40.57 -0.51 -7.24 15 10 C -0.03 -0.63 9.24 -39.17 -0.36 -0.99 15 11 C -0.06 -1.24 5.06 -104.68 -0.53 -1.77 15 12 C 0.05 1.12 4.59 -29.03 -0.13 0.99 15 13 C -0.51 -13.16 9.09 -34.44 -0.31 -13.48 15 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 15 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 16 N -0.89 -24.67 13.29 55.43 0.74 -23.93 15 17 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 15 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 21 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15 22 H 0.09 1.50 6.00 -51.93 -0.31 1.18 15 23 H 0.06 0.72 8.08 -51.93 -0.42 0.30 15 24 H 0.14 1.80 8.06 -52.49 -0.42 1.38 15 25 H 0.41 3.24 9.11 45.56 0.42 3.66 15 26 H 0.14 2.54 7.61 -52.48 -0.40 2.14 15 27 H 0.03 0.78 8.05 -51.93 -0.42 0.36 15 28 H 0.04 0.93 6.14 -51.93 -0.32 0.61 15 29 H 0.26 6.90 8.31 -40.82 -0.34 6.56 15 LS Contribution 265.76 15.07 4.00 4.00 Total: -1.00 -29.94 265.76 -5.61 -35.55 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -1.84 Total: 0.32 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -2.70 Total: -11.78 kcal Atomic # 7 Polarization: -24.67 SS G_CDS: 0.74 Total: -23.93 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.83 Total: -17.27 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.94 -5.61 -35.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260136908.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.823 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds