Wall clock time and date at job start Mon Mar 30 2020 05:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00051 * 2 1 4 4 H 1.48496 * 109.47151 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46940 * 300.00269 * 3 2 1 6 6 H 1.48503 * 109.46900 * 60.00193 * 3 2 1 7 7 C 1.37874 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99986 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00021 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46939 * 180.02562 * 9 7 2 11 11 H 1.08995 * 110.97079 * 50.87234 * 10 9 7 12 12 C 1.54133 * 111.09875 * 175.00218 * 10 9 7 13 13 C 1.50876 * 110.53908 * 146.17256 * 12 10 9 14 14 C 1.39623 * 126.79289 * 159.78200 * 13 12 10 15 15 C 1.37870 * 121.04280 * 179.73796 * 14 13 12 16 16 F 1.35096 * 119.76113 * 179.97438 * 15 14 13 17 17 C 1.38505 * 120.48575 * 359.97438 * 15 14 13 18 18 C 1.38041 * 119.26514 * 0.27249 * 17 15 14 19 19 C 1.38792 * 120.19417 * 359.62885 * 18 17 15 20 20 S 1.77447 * 130.53298 * 179.88648 * 19 18 17 21 21 H 0.97007 * 120.00377 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47113 * 60.00435 * 9 7 2 23 23 H 1.08995 * 109.47117 * 299.99771 * 9 7 2 24 24 H 1.09003 * 109.27007 * 25.88178 * 12 10 9 25 25 H 1.08997 * 109.27004 * 266.45884 * 12 10 9 26 26 H 1.07997 * 119.48151 * 359.72012 * 14 13 12 27 27 H 1.08001 * 120.36702 * 180.02562 * 17 15 14 28 28 H 1.07998 * 119.89832 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9869 -3.5412 0.7890 12 6 1.5169 -5.0147 0.1247 13 6 2.2462 -6.0825 -0.6526 14 6 2.1414 -7.4637 -0.4768 15 6 2.8633 -8.3372 -1.2620 16 9 2.7424 -9.6688 -1.0693 17 6 3.7116 -7.8595 -2.2472 18 6 3.8318 -6.4968 -2.4317 19 6 3.1029 -5.6185 -1.6419 20 16 3.0472 -3.8449 -1.6391 21 1 -0.4851 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6247 -2.5571 0.8897 24 1 0.5036 -4.9151 -0.2644 25 1 1.4708 -5.3025 1.1750 26 1 1.4846 -7.8539 0.2865 27 1 4.2759 -8.5455 -2.8615 28 1 4.4900 -6.1131 -3.1971 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260140668.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:27 Heat of formation + Delta-G solvation = -34.881606 kcal Electronic energy + Delta-G solvation = -13843.218138 eV Core-core repulsion = 11284.962499 eV Total energy + Delta-G solvation = -2558.255639 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.85594 -39.07667 -35.12327 -32.88132 -30.72958 -30.26412 -27.05001 -23.97630 -23.03314 -21.59776 -20.42245 -17.53552 -16.88041 -16.31631 -16.27563 -15.58688 -14.99000 -14.66792 -14.08210 -13.66057 -13.44785 -12.91547 -12.77742 -12.41188 -12.04318 -11.73807 -11.27810 -11.05610 -10.92937 -10.62810 -10.48307 -9.82666 -9.56440 -9.31810 -9.10293 -8.87611 -8.45903 -6.91060 -6.11895 -4.15059 1.10035 1.20626 2.08506 2.91150 3.26621 3.34621 3.39115 3.51984 4.19156 4.38322 4.64876 4.83752 5.10546 5.15685 5.25906 5.43978 5.50727 5.68579 5.82346 6.02577 6.08486 6.18769 6.28643 6.34481 6.45483 6.85405 7.38190 7.50578 7.83866 8.20013 8.89079 9.50031 10.99171 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.061026 B = 0.005408 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.708795 B = 5176.385478 C = 5501.466245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.038 3.962 10 C -0.031 4.031 11 H 0.096 0.904 12 C -0.092 4.092 13 C -0.073 4.073 14 C -0.133 4.133 15 C 0.083 3.917 16 F -0.145 7.145 17 C -0.141 4.141 18 C -0.069 4.069 19 C -0.095 4.095 20 S -0.120 6.120 21 H 0.262 0.738 22 H 0.034 0.966 23 H 0.037 0.963 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.132 0.868 27 H 0.138 0.862 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.920 -13.456 -1.920 14.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.078 0.922 9 C 0.000 4.000 10 C -0.159 4.159 11 H 0.114 0.886 12 C -0.130 4.130 13 C -0.079 4.079 14 C -0.154 4.154 15 C 0.061 3.939 16 F -0.123 7.123 17 C -0.162 4.162 18 C -0.093 4.093 19 C -0.208 4.208 20 S 0.126 5.874 21 H 0.072 0.928 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.115 0.885 25 H 0.105 0.895 26 H 0.150 0.850 27 H 0.156 0.844 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.138 -12.333 -2.730 13.637 hybrid contribution -0.005 -0.316 0.878 0.934 sum 5.133 -12.650 -1.852 13.776 Atomic orbital electron populations 1.69953 1.06059 1.26842 1.50218 1.24969 0.94844 0.99345 0.94910 0.86504 0.80220 0.83520 0.77656 1.19588 1.20880 1.20944 1.21161 0.93156 0.90459 1.51416 0.92220 1.19172 0.92721 0.89401 0.98736 1.24436 1.00897 0.97527 0.93043 0.88574 1.21200 1.00329 0.91054 1.00449 1.20903 0.96501 0.93756 0.96787 1.20703 1.01554 0.91975 1.01153 1.17305 1.00617 0.77104 0.98853 1.91472 1.95149 1.31008 1.94718 1.20997 1.00359 0.95887 0.98954 1.20238 0.98665 0.91099 0.99322 1.22652 0.99448 0.99651 0.99061 1.86636 1.76526 0.95692 1.28595 0.92825 0.94778 0.94482 0.88465 0.89457 0.85031 0.84419 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.71 13.29 55.43 0.74 -24.98 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 15 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 7 C -0.52 -14.05 8.88 -34.44 -0.31 -14.35 15 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 15 9 C 0.04 0.90 4.40 -27.88 -0.12 0.78 15 10 C -0.03 -0.60 3.33 -26.14 -0.09 -0.69 15 11 H 0.10 1.84 8.14 -51.93 -0.42 1.42 15 12 C -0.09 -1.49 5.86 -27.20 -0.16 -1.65 15 13 C -0.07 -1.15 5.98 -103.79 -0.62 -1.77 15 14 C -0.13 -1.84 9.95 -39.20 -0.39 -2.23 15 15 C 0.08 1.12 7.26 -39.62 -0.29 0.83 15 16 F -0.14 -1.92 17.25 2.25 0.04 -1.88 15 17 C -0.14 -1.75 10.06 -39.56 -0.40 -2.15 15 18 C -0.07 -0.94 10.05 -39.45 -0.40 -1.34 15 19 C -0.09 -1.55 6.48 -39.15 -0.25 -1.80 15 20 S -0.12 -2.31 22.33 -107.50 -2.40 -4.71 15 21 H 0.26 7.14 8.31 -40.82 -0.34 6.81 15 22 H 0.03 0.88 8.13 -51.93 -0.42 0.46 15 23 H 0.04 0.92 8.14 -51.93 -0.42 0.50 15 24 H 0.10 1.58 7.86 -51.93 -0.41 1.17 15 25 H 0.09 1.22 8.14 -51.93 -0.42 0.80 15 26 H 0.13 1.55 8.06 -52.49 -0.42 1.13 15 27 H 0.14 1.32 8.06 -52.49 -0.42 0.89 15 28 H 0.13 1.56 8.06 -52.49 -0.42 1.14 15 LS Contribution 262.06 15.07 3.95 3.95 Total: -1.00 -28.46 262.06 -8.72 -37.18 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: -2.91 Total: -2.96 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -3.12 Total: -22.76 kcal Atomic # 7 Polarization: -25.71 SS G_CDS: 0.74 Total: -24.98 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -2.31 SS G_CDS: -2.40 Total: -4.71 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.46 -8.72 -37.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260140668.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.303 kcal (2) G-P(sol) polarization free energy of solvation -28.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds