Wall clock time and date at job start Mon Mar 30 2020 05:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.96952 * 309.13026 * 10 9 7 12 12 C 1.54147 * 111.09834 * 185.00459 * 10 9 7 13 13 C 1.50882 * 110.49335 * 213.72042 * 12 10 9 14 14 C 1.39626 * 126.79957 * 200.60970 * 13 12 10 15 15 C 1.37871 * 121.03574 * 180.33554 * 14 13 12 16 16 F 1.35104 * 119.75113 * 180.02562 * 15 14 13 17 17 C 1.38495 * 120.48826 * 0.02562 * 15 14 13 18 18 C 1.38031 * 119.26897 * 359.86280 * 17 15 14 19 19 C 1.38799 * 120.20054 * 359.97261 * 18 17 15 20 20 S 1.77446 * 130.53838 * 180.67924 * 19 18 17 21 21 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 23 23 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 24 24 H 1.09003 * 109.27453 * 333.99147 * 12 10 9 25 25 H 1.08990 * 109.28383 * 93.51688 * 12 10 9 26 26 H 1.07997 * 119.48042 * 0.35728 * 14 13 12 27 27 H 1.08002 * 120.36247 * 179.83569 * 17 15 14 28 28 H 1.08007 * 119.90416 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9871 -3.5411 -0.7900 12 6 1.5171 -5.0148 -0.1260 13 6 2.2486 -6.0825 0.6495 14 6 2.1504 -7.4634 0.4682 15 6 2.8727 -8.3366 1.2536 16 9 2.7583 -9.6681 1.0554 17 6 3.7146 -7.8589 2.2441 18 6 3.8259 -6.4965 2.4359 19 6 3.1010 -5.6181 1.6425 20 16 3.0465 -3.8445 1.6383 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 0.5045 -4.9159 0.2652 25 1 1.4706 -5.3025 -1.1762 26 1 1.4987 -7.8537 -0.2994 27 1 4.2774 -8.5448 2.8598 28 1 4.4798 -6.1127 3.2051 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260140671.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:29 Heat of formation + Delta-G solvation = -34.852240 kcal Electronic energy + Delta-G solvation = -13843.386880 eV Core-core repulsion = 11285.132514 eV Total energy + Delta-G solvation = -2558.254366 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.85362 -39.07631 -35.12264 -32.88036 -30.72824 -30.26364 -27.04885 -23.97453 -23.03227 -21.59514 -20.42295 -17.53429 -16.87989 -16.31531 -16.27431 -15.58576 -14.98980 -14.66798 -14.08384 -13.66001 -13.44715 -12.91586 -12.77320 -12.40497 -12.04413 -11.73946 -11.27734 -11.03997 -10.93268 -10.64474 -10.48133 -9.82234 -9.56173 -9.32489 -9.11059 -8.87652 -8.45388 -6.90939 -6.11665 -4.14931 1.10116 1.20678 2.08523 2.91286 3.27531 3.34280 3.38463 3.52004 4.19233 4.38393 4.64914 4.83781 5.10615 5.15725 5.26019 5.43982 5.50841 5.68564 5.82368 6.02535 6.08541 6.18842 6.28623 6.34533 6.45515 6.85454 7.38189 7.50624 7.83852 8.20127 8.88926 9.50075 10.99368 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.061022 B = 0.005408 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.740610 B = 5176.449182 C = 5500.552365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.038 3.962 10 C -0.031 4.031 11 H 0.096 0.904 12 C -0.092 4.092 13 C -0.074 4.074 14 C -0.133 4.133 15 C 0.083 3.917 16 F -0.145 7.145 17 C -0.141 4.141 18 C -0.069 4.069 19 C -0.095 4.095 20 S -0.120 6.120 21 H 0.263 0.737 22 H 0.037 0.963 23 H 0.034 0.966 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.132 0.868 27 H 0.138 0.862 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.911 -13.440 1.926 14.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.563 4.563 8 H 0.077 0.923 9 C 0.000 4.000 10 C -0.159 4.159 11 H 0.114 0.886 12 C -0.130 4.130 13 C -0.080 4.080 14 C -0.154 4.154 15 C 0.061 3.939 16 F -0.124 7.124 17 C -0.162 4.162 18 C -0.093 4.093 19 C -0.208 4.208 20 S 0.126 5.874 21 H 0.072 0.928 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.115 0.885 25 H 0.105 0.895 26 H 0.150 0.850 27 H 0.156 0.844 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.124 -12.315 2.740 13.617 hybrid contribution 0.008 -0.320 -0.890 0.946 sum 5.132 -12.636 1.850 13.763 Atomic orbital electron populations 1.69942 1.06060 1.26956 1.50121 1.24968 0.94842 0.99330 0.94897 0.86557 0.79970 0.83192 0.78173 1.20578 1.21121 1.19693 1.21122 0.93118 0.90475 1.51555 0.92277 1.19168 0.92713 0.89382 0.98732 1.24437 1.00910 0.97534 0.93048 0.88574 1.21206 1.00304 0.91043 1.00467 1.20909 0.96546 0.93763 0.96770 1.20705 1.01552 0.91980 1.01138 1.17304 1.00665 0.77113 0.98810 1.91474 1.95191 1.31027 1.94659 1.20991 1.00427 0.95889 0.98878 1.20236 0.98680 0.91106 0.99312 1.22658 0.99503 0.99660 0.98990 1.86638 1.76538 0.95665 1.28552 0.92766 0.94488 0.94784 0.88456 0.89459 0.85031 0.84420 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 13.29 55.43 0.74 -24.99 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 15 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 15 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 7 C -0.52 -14.07 8.88 -34.44 -0.31 -14.38 15 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 15 9 C 0.04 0.91 4.40 -27.88 -0.12 0.79 15 10 C -0.03 -0.61 3.33 -26.13 -0.09 -0.69 15 11 H 0.10 1.84 8.14 -51.93 -0.42 1.42 15 12 C -0.09 -1.49 5.86 -27.19 -0.16 -1.65 15 13 C -0.07 -1.16 5.98 -103.79 -0.62 -1.78 15 14 C -0.13 -1.84 9.95 -39.20 -0.39 -2.23 15 15 C 0.08 1.12 7.26 -39.62 -0.29 0.83 15 16 F -0.14 -1.92 17.26 2.25 0.04 -1.88 15 17 C -0.14 -1.75 10.06 -39.56 -0.40 -2.14 15 18 C -0.07 -0.94 10.05 -39.45 -0.40 -1.34 15 19 C -0.09 -1.55 6.48 -39.14 -0.25 -1.80 15 20 S -0.12 -2.30 22.33 -107.50 -2.40 -4.71 15 21 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 22 H 0.04 0.92 8.14 -51.93 -0.42 0.50 15 23 H 0.03 0.88 8.12 -51.93 -0.42 0.46 15 24 H 0.10 1.58 7.86 -51.93 -0.41 1.17 15 25 H 0.09 1.22 8.14 -51.93 -0.42 0.80 15 26 H 0.13 1.55 8.06 -52.49 -0.42 1.13 15 27 H 0.14 1.32 8.06 -52.49 -0.42 0.89 15 28 H 0.13 1.57 8.06 -52.48 -0.42 1.14 15 LS Contribution 262.06 15.07 3.95 3.95 Total: -1.00 -28.45 262.06 -8.72 -37.17 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: -2.91 Total: -2.92 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -3.12 Total: -22.78 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.74 Total: -24.99 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -2.40 Total: -4.71 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.45 -8.72 -37.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260140671.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.318 kcal (2) G-P(sol) polarization free energy of solvation -28.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds