Wall clock time and date at job start Mon Mar 30 2020 05:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.96952 * 309.13026 * 10 9 7 12 12 C 1.54147 * 111.09834 * 185.00459 * 10 9 7 13 13 C 1.50882 * 110.49335 * 213.72042 * 12 10 9 14 14 C 1.39626 * 126.79957 * 200.60970 * 13 12 10 15 15 C 1.37871 * 121.03574 * 180.33554 * 14 13 12 16 16 F 1.35104 * 119.75113 * 180.02562 * 15 14 13 17 17 C 1.38495 * 120.48826 * 0.02562 * 15 14 13 18 18 C 1.38031 * 119.26897 * 359.86280 * 17 15 14 19 19 C 1.38799 * 120.20054 * 359.97261 * 18 17 15 20 20 S 1.77446 * 130.53838 * 180.67924 * 19 18 17 21 21 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 23 23 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 24 24 H 1.09003 * 109.27453 * 333.99147 * 12 10 9 25 25 H 1.08990 * 109.28383 * 93.51688 * 12 10 9 26 26 H 1.07997 * 119.48042 * 0.35728 * 14 13 12 27 27 H 1.08002 * 120.36247 * 179.83569 * 17 15 14 28 28 H 1.08007 * 119.90416 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9871 -3.5411 -0.7900 12 6 1.5171 -5.0148 -0.1260 13 6 2.2486 -6.0825 0.6495 14 6 2.1504 -7.4634 0.4682 15 6 2.8727 -8.3366 1.2536 16 9 2.7583 -9.6681 1.0554 17 6 3.7146 -7.8589 2.2441 18 6 3.8259 -6.4965 2.4359 19 6 3.1010 -5.6181 1.6425 20 16 3.0465 -3.8445 1.6383 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 0.5045 -4.9159 0.2652 25 1 1.4706 -5.3025 -1.1762 26 1 1.4987 -7.8537 -0.2994 27 1 4.2774 -8.5448 2.8598 28 1 4.4798 -6.1127 3.2051 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260140671.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:28 Heat of formation + Delta-G solvation = -48.759348 kcal Electronic energy + Delta-G solvation = -13843.989938 eV Core-core repulsion = 11285.132514 eV Total energy + Delta-G solvation = -2558.857423 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.90236 -40.22480 -36.67842 -34.71188 -32.13683 -31.54032 -28.64918 -25.66936 -24.22599 -23.00012 -21.88174 -18.76760 -18.56331 -17.80324 -17.43379 -16.72701 -16.55319 -16.28088 -15.44387 -14.87907 -14.64202 -14.38139 -14.10791 -13.98556 -13.66937 -13.17658 -12.85841 -12.77415 -12.49269 -12.20039 -12.01380 -11.71435 -11.34809 -10.95323 -10.59204 -10.39169 -9.96299 -8.34711 -8.22611 -6.32080 -0.03226 0.13055 0.69057 1.39749 1.40808 1.47993 1.51797 2.39218 2.42133 3.06619 3.12874 3.54402 3.71835 3.92570 4.04227 4.09092 4.33985 4.48023 4.68982 4.71176 4.84071 4.91828 5.05391 5.10421 5.22952 5.35668 5.50372 5.74011 5.79505 6.14396 6.79715 7.36476 8.88834 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.061022 B = 0.005408 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.740610 B = 5176.449182 C = 5500.552365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.958 3.042 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.536 4.536 8 H 0.057 0.943 9 C 0.047 3.953 10 C -0.024 4.024 11 H 0.097 0.903 12 C -0.085 4.085 13 C -0.084 4.084 14 C -0.132 4.132 15 C 0.085 3.915 16 F -0.141 7.141 17 C -0.128 4.128 18 C -0.067 4.067 19 C -0.107 4.107 20 S -0.173 6.173 21 H 0.265 0.735 22 H 0.022 0.978 23 H 0.007 0.993 24 H 0.091 0.909 25 H 0.110 0.890 26 H 0.152 0.848 27 H 0.173 0.827 28 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.105 -15.073 2.088 16.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.783 3.217 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.574 4.574 8 H 0.075 0.925 9 C 0.009 3.991 10 C -0.152 4.152 11 H 0.115 0.885 12 C -0.123 4.123 13 C -0.090 4.090 14 C -0.152 4.152 15 C 0.063 3.937 16 F -0.119 7.119 17 C -0.148 4.148 18 C -0.090 4.090 19 C -0.221 4.221 20 S 0.072 5.928 21 H 0.073 0.927 22 H 0.040 0.960 23 H 0.025 0.975 24 H 0.110 0.890 25 H 0.129 0.871 26 H 0.170 0.830 27 H 0.190 0.810 28 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.325 -13.977 2.896 15.613 hybrid contribution -0.341 0.035 -0.901 0.964 sum 5.984 -13.942 1.995 15.303 Atomic orbital electron populations 1.70054 1.07496 1.27846 1.51327 1.25811 0.95676 1.02889 0.94684 0.85552 0.78660 0.78988 0.78549 1.19553 1.20803 1.19289 1.21481 0.93241 0.91875 1.50832 0.92501 1.18923 0.93012 0.90540 0.96633 1.24132 1.00077 0.97797 0.93222 0.88487 1.21077 0.99526 0.89550 1.02160 1.20818 0.96884 0.94367 0.96883 1.20855 1.01707 0.91038 1.01622 1.17449 1.00361 0.77202 0.98686 1.91494 1.95128 1.30710 1.94618 1.21329 0.99562 0.95596 0.98316 1.20525 0.98166 0.91359 0.98992 1.22599 1.01533 0.97160 1.00764 1.86625 1.77366 0.99935 1.28921 0.92654 0.95965 0.97492 0.89049 0.87145 0.83016 0.80973 0.82893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.67 13.29 21.45 0.28 -54.39 15 2 C 0.01 0.45 5.46 84.65 0.46 0.91 15 3 Si 0.96 43.82 29.54 68.60 2.03 45.84 15 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 15 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 15 7 C -0.54 -29.44 8.88 25.60 0.23 -29.21 15 8 H 0.06 3.08 7.74 -2.91 -0.02 3.06 15 9 C 0.05 2.34 4.40 29.85 0.13 2.47 15 10 C -0.02 -0.95 3.33 30.98 0.10 -0.85 15 11 H 0.10 3.77 8.14 -2.39 -0.02 3.75 15 12 C -0.09 -2.71 5.86 30.29 0.18 -2.54 15 13 C -0.08 -2.49 5.98 -19.32 -0.12 -2.61 15 14 C -0.13 -3.27 9.95 22.52 0.22 -3.05 15 15 C 0.08 1.98 7.26 22.24 0.16 2.14 15 16 F -0.14 -3.21 17.26 44.97 0.78 -2.44 15 17 C -0.13 -2.66 10.06 22.28 0.22 -2.43 15 18 C -0.07 -1.64 10.05 22.36 0.22 -1.42 15 19 C -0.11 -3.39 6.48 22.55 0.15 -3.24 15 20 S -0.17 -6.74 22.33 -56.49 -1.26 -8.00 15 21 H 0.26 14.72 8.31 -92.71 -0.77 13.95 15 22 H 0.02 1.15 8.14 -2.39 -0.02 1.13 15 23 H 0.01 0.37 8.12 -2.39 -0.02 0.35 15 24 H 0.09 3.00 7.86 -2.39 -0.02 2.98 15 25 H 0.11 2.94 8.14 -2.39 -0.02 2.92 15 26 H 0.15 3.09 8.06 -2.91 -0.02 3.07 15 27 H 0.17 2.41 8.06 -2.91 -0.02 2.38 15 28 H 0.15 3.14 8.06 -2.91 -0.02 3.12 15 Total: -1.00 -61.51 262.06 4.95 -56.55 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: 1.16 Total: 2.26 kcal Atomic # 6 Polarization: -41.80 SS G_CDS: 1.97 Total: -39.83 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.28 Total: -54.39 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.78 Total: -2.44 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -6.74 SS G_CDS: -1.26 Total: -8.00 kcal Total: -61.51 4.95 -56.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260140671.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.795 kcal (2) G-P(sol) polarization free energy of solvation -61.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds