Wall clock time and date at job start Mon Mar 30 2020 05:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00023 * 2 1 4 4 H 1.48496 * 109.47307 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.46890 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47221 * 120.00036 * 3 2 1 7 7 C 1.37876 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99925 * 178.67584 * 7 2 1 9 9 C 1.50697 * 120.00249 * 358.68178 * 7 2 1 10 10 C 1.50699 * 115.55174 * 85.06048 * 9 7 2 11 11 C 1.38163 * 120.02083 * 245.66996 * 10 9 7 12 12 C 1.38351 * 120.04387 * 180.02562 * 11 10 9 13 13 Cl 1.73602 * 119.95828 * 180.02562 * 12 11 10 14 14 C 1.38389 * 120.07914 * 359.97438 * 12 11 10 15 15 C 1.38119 * 120.04996 * 359.97438 * 14 12 11 16 16 C 1.38702 * 120.02160 * 65.39173 * 10 9 7 17 17 O 1.35919 * 120.04148 * 359.97438 * 16 10 9 18 18 C 1.53003 * 117.49965 * 230.73425 * 9 7 2 19 19 C 1.53005 * 117.49761 * 299.39381 * 9 7 2 20 20 H 0.96998 * 120.00359 * 354.95882 * 1 2 3 21 21 H 1.07998 * 119.98306 * 359.97438 * 11 10 9 22 22 H 1.08005 * 119.97174 * 179.97438 * 14 12 11 23 23 H 1.07991 * 120.02337 * 180.02562 * 15 14 12 24 24 H 0.96706 * 114.00041 * 95.04935 * 17 16 10 25 25 H 1.09005 * 117.49466 * 215.00296 * 18 9 7 26 26 H 1.08998 * 117.49820 * 0.02562 * 18 9 7 27 27 H 1.09002 * 117.49450 * 359.97114 * 19 9 7 28 28 H 1.08995 * 117.49845 * 144.97422 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0843 -1.1942 -0.0211 9 6 1.2514 -2.4990 0.0311 10 6 0.7981 -3.0195 -1.3085 11 6 -0.5504 -3.1057 -1.5964 12 6 -0.9670 -3.5840 -2.8259 13 17 -2.6620 -3.6908 -3.1855 14 6 -0.0342 -3.9764 -3.7698 15 6 1.3149 -3.8906 -3.4862 16 6 1.7347 -3.4068 -2.2555 17 8 3.0618 -3.3169 -1.9764 18 6 1.6630 -3.5277 1.0863 19 6 0.3450 -2.7635 1.2352 20 1 -0.4850 0.8368 0.0738 21 1 -1.2799 -2.8004 -0.8609 22 1 -0.3613 -4.3499 -4.7290 23 1 2.0425 -4.1965 -4.2233 24 1 3.4503 -4.1376 -1.6435 25 1 1.6061 -4.5809 0.8113 26 1 2.4783 -3.2604 1.7585 27 1 0.2940 -1.9938 2.0053 28 1 -0.5791 -3.3136 1.0582 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260145649.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:42 Heat of formation + Delta-G solvation = -3.493636 kcal Electronic energy + Delta-G solvation = -14726.434893 eV Core-core repulsion = 12155.123843 eV Total energy + Delta-G solvation = -2571.311051 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.33623 -36.50917 -36.16784 -35.21394 -31.95351 -30.03158 -28.74784 -25.64477 -22.74214 -22.05080 -20.88691 -19.37332 -17.62907 -16.64912 -15.52363 -15.08826 -14.57574 -14.53712 -13.90771 -13.32509 -13.03473 -12.62876 -12.11862 -11.68895 -11.62986 -10.97691 -10.93602 -10.72060 -10.56799 -10.48477 -10.23798 -10.04093 -9.50917 -9.31900 -8.48156 -8.31305 -8.07025 -7.65294 -6.03679 -4.09778 1.72991 1.95799 2.64544 3.32370 3.36804 3.40105 4.18842 4.41468 4.87642 5.19210 5.26778 5.45966 5.48888 5.80742 6.04493 6.22265 6.29688 6.47758 6.52231 6.63300 6.70667 6.79734 7.02492 7.13536 7.31834 7.45010 7.54239 7.88722 8.34836 8.39388 8.91499 9.54642 11.03874 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.022848 B = 0.009425 C = 0.008608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.190421 B = 2970.045814 C = 3252.124522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.069 3.931 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.478 4.478 8 H 0.065 0.935 9 C 0.078 3.922 10 C -0.012 4.012 11 C -0.081 4.081 12 C -0.046 4.046 13 Cl -0.093 7.093 14 C -0.125 4.125 15 C -0.150 4.150 16 C 0.113 3.887 17 O -0.478 6.478 18 C -0.201 4.201 19 C -0.155 4.155 20 H 0.261 0.739 21 H 0.136 0.864 22 H 0.123 0.877 23 H 0.125 0.875 24 H 0.375 0.625 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.316 -8.269 -3.944 9.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.515 4.515 8 H 0.083 0.917 9 C 0.078 3.922 10 C -0.013 4.013 11 C -0.100 4.100 12 C -0.073 4.073 13 Cl -0.064 7.064 14 C -0.144 4.144 15 C -0.169 4.169 16 C 0.068 3.932 17 O -0.286 6.286 18 C -0.239 4.239 19 C -0.192 4.192 20 H 0.071 0.929 21 H 0.153 0.847 22 H 0.141 0.859 23 H 0.143 0.857 24 H 0.229 0.771 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.706 -7.547 -4.228 8.679 hybrid contribution 0.239 0.559 -0.003 0.608 sum -0.467 -6.988 -4.230 8.182 Atomic orbital electron populations 1.69976 1.05779 1.26963 1.48393 1.25002 0.94905 0.99006 0.94543 0.86650 0.79631 0.82989 0.78729 1.20124 1.21320 1.20218 1.20337 0.92431 0.87634 1.51093 0.91710 1.17493 0.98304 0.93533 0.82893 1.20198 0.90960 0.92584 0.97556 1.20922 0.96389 0.97692 0.95007 1.20892 0.83661 1.06112 0.96621 1.98312 1.16006 1.97151 1.94960 1.20588 0.91883 1.03181 0.98718 1.21226 0.95261 1.02954 0.97422 1.18356 0.83832 0.98760 0.92211 1.84927 1.19063 1.37983 1.86622 1.23034 0.99671 0.95307 1.05857 1.22614 0.91504 1.01349 1.03738 0.92924 0.84654 0.85888 0.85679 0.77067 0.91839 0.89960 0.89561 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.35 12.78 55.43 0.71 -23.64 15 2 C 0.07 1.88 5.41 -17.82 -0.10 1.78 15 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 15 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 15 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 15 7 C -0.48 -12.81 8.40 -34.44 -0.29 -13.10 15 8 H 0.06 1.76 7.81 -52.48 -0.41 1.35 15 9 C 0.08 1.86 1.15 -156.81 -0.18 1.68 15 10 C -0.01 -0.26 5.12 -104.48 -0.54 -0.79 15 11 C -0.08 -1.73 9.01 -39.57 -0.36 -2.09 15 12 C -0.05 -0.87 6.32 -39.48 -0.25 -1.12 15 13 Cl -0.09 -1.54 28.95 -51.86 -1.50 -3.04 15 14 C -0.12 -2.11 9.82 -39.57 -0.39 -2.50 15 15 C -0.15 -2.58 9.99 -39.44 -0.39 -2.98 15 16 C 0.11 2.27 6.62 -39.22 -0.26 2.01 15 17 O -0.48 -9.08 12.61 -19.49 -0.25 -9.32 15 18 C -0.20 -4.17 9.94 -26.69 -0.27 -4.43 15 19 C -0.15 -3.49 8.80 -26.69 -0.23 -3.73 15 20 H 0.26 7.03 8.32 -40.82 -0.34 6.69 15 21 H 0.14 3.01 7.03 -52.49 -0.37 2.64 15 22 H 0.12 1.73 8.06 -52.48 -0.42 1.31 15 23 H 0.13 1.79 8.06 -52.49 -0.42 1.37 15 24 H 0.38 5.12 9.06 45.56 0.41 5.54 15 25 H 0.06 1.17 8.14 -51.93 -0.42 0.75 15 26 H 0.08 1.67 8.14 -51.93 -0.42 1.25 15 27 H 0.09 2.08 8.14 -51.93 -0.42 1.66 15 28 H 0.06 1.38 7.14 -51.93 -0.37 1.01 15 LS Contribution 265.70 15.07 4.00 4.00 Total: -1.00 -28.86 265.70 -7.29 -36.15 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -1.99 Total: 4.82 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -3.25 Total: -25.26 kcal Atomic # 7 Polarization: -24.35 SS G_CDS: 0.71 Total: -23.64 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -0.25 Total: -9.32 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -1.50 Total: -3.04 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.86 -7.29 -36.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260145649.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.658 kcal (2) G-P(sol) polarization free energy of solvation -28.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds