Wall clock time and date at job start Mon Mar 30 2020 05:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00023 * 2 1 4 4 H 1.48496 * 109.47307 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.46890 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47221 * 120.00036 * 3 2 1 7 7 C 1.37876 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99925 * 178.67584 * 7 2 1 9 9 C 1.50697 * 120.00249 * 358.68178 * 7 2 1 10 10 C 1.50699 * 115.55174 * 85.06048 * 9 7 2 11 11 C 1.38163 * 120.02083 * 245.66996 * 10 9 7 12 12 C 1.38351 * 120.04387 * 180.02562 * 11 10 9 13 13 Cl 1.73602 * 119.95828 * 180.02562 * 12 11 10 14 14 C 1.38389 * 120.07914 * 359.97438 * 12 11 10 15 15 C 1.38119 * 120.04996 * 359.97438 * 14 12 11 16 16 C 1.38702 * 120.02160 * 65.39173 * 10 9 7 17 17 O 1.35919 * 120.04148 * 359.97438 * 16 10 9 18 18 C 1.53003 * 117.49965 * 230.73425 * 9 7 2 19 19 C 1.53005 * 117.49761 * 299.39381 * 9 7 2 20 20 H 0.96998 * 120.00359 * 354.95882 * 1 2 3 21 21 H 1.07998 * 119.98306 * 359.97438 * 11 10 9 22 22 H 1.08005 * 119.97174 * 179.97438 * 14 12 11 23 23 H 1.07991 * 120.02337 * 180.02562 * 15 14 12 24 24 H 0.96706 * 114.00041 * 95.04935 * 17 16 10 25 25 H 1.09005 * 117.49466 * 215.00296 * 18 9 7 26 26 H 1.08998 * 117.49820 * 0.02562 * 18 9 7 27 27 H 1.09002 * 117.49450 * 359.97114 * 19 9 7 28 28 H 1.08995 * 117.49845 * 144.97422 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0843 -1.1942 -0.0211 9 6 1.2514 -2.4990 0.0311 10 6 0.7981 -3.0195 -1.3085 11 6 -0.5504 -3.1057 -1.5964 12 6 -0.9670 -3.5840 -2.8259 13 17 -2.6620 -3.6908 -3.1855 14 6 -0.0342 -3.9764 -3.7698 15 6 1.3149 -3.8906 -3.4862 16 6 1.7347 -3.4068 -2.2555 17 8 3.0618 -3.3169 -1.9764 18 6 1.6630 -3.5277 1.0863 19 6 0.3450 -2.7635 1.2352 20 1 -0.4850 0.8368 0.0738 21 1 -1.2799 -2.8004 -0.8609 22 1 -0.3613 -4.3499 -4.7290 23 1 2.0425 -4.1965 -4.2233 24 1 3.4503 -4.1376 -1.6435 25 1 1.6061 -4.5809 0.8113 26 1 2.4783 -3.2604 1.7585 27 1 0.2940 -1.9938 2.0053 28 1 -0.5791 -3.3136 1.0582 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260145649.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:41 Heat of formation + Delta-G solvation = -20.513409 kcal Electronic energy + Delta-G solvation = -14727.172926 eV Core-core repulsion = 12155.123843 eV Total energy + Delta-G solvation = -2572.049083 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.83427 -37.94193 -37.81446 -36.64403 -33.96846 -31.51461 -30.21672 -27.63708 -24.32488 -23.57482 -22.54520 -21.10148 -19.12400 -18.39258 -17.12991 -16.59403 -16.52985 -15.99711 -15.58715 -14.79630 -14.75068 -14.04949 -13.73696 -13.34395 -13.17072 -12.84952 -12.81364 -12.44647 -12.11452 -12.01572 -11.88897 -11.68414 -11.15161 -11.07885 -10.45053 -10.08267 -9.59523 -9.15793 -8.06646 -6.17721 0.27420 0.50309 1.24244 1.41308 1.42918 1.49274 2.43482 2.72974 3.22307 3.46224 3.56309 3.99672 4.08028 4.32337 4.53936 4.57282 4.73191 4.93847 4.94724 4.98158 5.20963 5.30375 5.34101 5.59192 5.62584 5.77075 5.84460 5.98060 6.42569 6.85913 7.10302 7.48559 8.99073 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.022848 B = 0.009425 C = 0.008608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.190421 B = 2970.045814 C = 3252.124522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.944 3.056 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.489 4.489 8 H 0.053 0.947 9 C 0.058 3.942 10 C -0.042 4.042 11 C -0.098 4.098 12 C -0.054 4.054 13 Cl -0.077 7.077 14 C -0.112 4.112 15 C -0.139 4.139 16 C 0.104 3.896 17 O -0.493 6.493 18 C -0.176 4.176 19 C -0.162 4.162 20 H 0.258 0.742 21 H 0.113 0.887 22 H 0.159 0.841 23 H 0.161 0.839 24 H 0.397 0.603 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.314 -9.396 -5.509 10.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.770 3.230 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.527 4.527 8 H 0.071 0.929 9 C 0.057 3.943 10 C -0.043 4.043 11 C -0.117 4.117 12 C -0.081 4.081 13 Cl -0.048 7.048 14 C -0.131 4.131 15 C -0.158 4.158 16 C 0.059 3.941 17 O -0.304 6.304 18 C -0.213 4.213 19 C -0.199 4.199 20 H 0.067 0.933 21 H 0.131 0.869 22 H 0.177 0.823 23 H 0.179 0.821 24 H 0.254 0.746 25 H 0.109 0.891 26 H 0.101 0.899 27 H 0.079 0.921 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.062 -8.695 -5.781 10.442 hybrid contribution 0.047 0.829 0.451 0.945 sum -0.014 -7.866 -5.331 9.502 Atomic orbital electron populations 1.70087 1.06707 1.27127 1.49800 1.25628 0.95621 1.01651 0.94770 0.85834 0.78548 0.79940 0.78639 1.20367 1.21192 1.19497 1.20572 0.92130 0.89455 1.50516 0.92914 1.17504 0.98889 0.93544 0.84341 1.20134 0.91910 0.94918 0.97344 1.20778 0.95830 0.99174 0.95934 1.20991 0.85036 1.05870 0.96166 1.98314 1.14731 1.97047 1.94722 1.21012 0.91394 1.01268 0.99386 1.21562 0.96155 1.01294 0.96761 1.18530 0.83803 0.98900 0.92856 1.84859 1.18672 1.40010 1.86851 1.23032 0.98102 0.96160 1.03976 1.22475 0.92829 1.01558 1.03063 0.93347 0.86941 0.82331 0.82101 0.74560 0.89125 0.89860 0.92069 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.26 12.78 21.45 0.27 -50.98 15 2 C 0.02 1.32 5.41 84.66 0.46 1.77 15 3 Si 0.94 44.19 29.54 68.60 2.03 46.21 15 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 15 5 H -0.29 -13.21 7.11 99.48 0.71 -12.51 15 6 H -0.27 -12.19 7.11 99.48 0.71 -11.49 15 7 C -0.49 -26.54 8.40 25.60 0.21 -26.33 15 8 H 0.05 2.90 7.81 -2.91 -0.02 2.88 15 9 C 0.06 2.75 1.15 -53.67 -0.06 2.69 15 10 C -0.04 -1.84 5.12 -19.77 -0.10 -1.94 15 11 C -0.10 -4.17 9.01 22.28 0.20 -3.96 15 12 C -0.05 -1.93 6.32 22.33 0.14 -1.79 15 13 Cl -0.08 -2.42 28.95 -2.72 -0.08 -2.50 15 14 C -0.11 -3.39 9.82 22.28 0.22 -3.17 15 15 C -0.14 -4.30 9.99 22.36 0.22 -4.08 15 16 C 0.10 3.97 6.62 22.50 0.15 4.12 15 17 O -0.49 -17.80 12.61 -92.64 -1.17 -18.96 15 18 C -0.18 -7.15 9.94 30.62 0.30 -6.84 15 19 C -0.16 -7.45 8.80 30.62 0.27 -7.18 15 20 H 0.26 14.22 8.32 -92.71 -0.77 13.45 15 21 H 0.11 5.17 7.03 -2.91 -0.02 5.15 15 22 H 0.16 3.66 8.06 -2.91 -0.02 3.64 15 23 H 0.16 3.79 8.06 -2.92 -0.02 3.77 15 24 H 0.40 9.94 9.06 -74.05 -0.67 9.27 15 25 H 0.09 3.17 8.14 -2.38 -0.02 3.15 15 26 H 0.08 3.33 8.14 -2.39 -0.02 3.31 15 27 H 0.06 3.07 8.14 -2.39 -0.02 3.05 15 28 H 0.07 3.14 7.14 -2.39 -0.02 3.13 15 Total: -1.00 -62.02 265.70 3.58 -58.44 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.51 Total: 14.50 kcal Atomic # 6 Polarization: -48.72 SS G_CDS: 2.02 Total: -46.71 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 0.27 Total: -50.98 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -1.17 Total: -18.96 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 17 Polarization: -2.42 SS G_CDS: -0.08 Total: -2.50 kcal Total: -62.02 3.58 -58.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260145649.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.923 kcal (2) G-P(sol) polarization free energy of solvation -62.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds