Wall clock time and date at job start Mon Mar 30 2020 05:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00168 * 2 1 4 4 H 1.48493 * 109.47089 * 240.00615 * 3 2 1 5 5 H 1.48503 * 109.46839 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47333 * 120.00210 * 3 2 1 7 7 C 1.37878 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00173 * 172.31430 * 7 2 1 9 9 C 1.50704 * 119.99730 * 352.31148 * 7 2 1 10 10 C 1.50700 * 115.55269 * 326.10663 * 9 7 2 11 11 C 1.38216 * 119.96580 * 114.69238 * 10 9 7 12 12 C 1.38180 * 120.13817 * 180.02562 * 11 10 9 13 13 C 1.38749 * 120.06754 * 0.02562 * 12 11 10 14 14 O 1.35952 * 120.03560 * 179.97438 * 13 12 11 15 15 C 1.38757 * 119.93119 * 359.69528 * 13 12 11 16 16 F 1.35097 * 120.06937 * 180.28156 * 15 13 12 17 17 C 1.38706 * 119.96276 * 294.67363 * 10 9 7 18 18 O 1.35952 * 120.03662 * 359.97438 * 17 10 9 19 19 C 1.52999 * 117.49833 * 111.77704 * 9 7 2 20 20 C 1.52997 * 117.49830 * 180.43637 * 9 7 2 21 21 H 0.96996 * 120.00321 * 5.01707 * 1 2 3 22 22 H 1.08000 * 119.93551 * 359.97438 * 11 10 9 23 23 H 1.07996 * 119.96548 * 179.97438 * 12 11 10 24 24 H 0.96704 * 114.00304 * 89.99513 * 14 13 12 25 25 H 0.96695 * 114.00001 * 85.97445 * 18 17 10 26 26 H 1.08994 * 117.49998 * 215.00228 * 19 9 7 27 27 H 1.08999 * 117.49981 * 0.02562 * 19 9 7 28 28 H 1.09003 * 117.49915 * 359.97438 * 20 9 7 29 29 H 1.08998 * 117.50444 * 144.97470 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1027 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0772 -1.1982 -0.1256 9 6 1.2611 -2.4934 0.1735 10 6 0.0553 -2.4366 1.0757 11 6 -1.2068 -2.6529 0.5556 12 6 -2.3149 -2.6012 1.3795 13 6 -2.1636 -2.3312 2.7320 14 8 -3.2543 -2.2800 3.5420 15 6 -0.8973 -2.1193 3.2583 16 9 -0.7461 -1.8619 4.5758 17 6 0.2134 -2.1677 2.4272 18 8 1.4553 -1.9559 2.9382 19 6 1.2007 -3.4391 -1.0277 20 6 2.0838 -3.7833 0.1742 21 1 -0.4850 0.8368 -0.0735 22 1 -1.3274 -2.8620 -0.4971 23 1 -3.2999 -2.7703 0.9701 24 1 -3.4892 -3.1295 3.9397 25 1 1.7589 -1.0406 2.8675 26 1 0.2889 -4.0201 -1.1654 27 1 1.6990 -3.1217 -1.9437 28 1 3.1627 -3.6923 0.0484 29 1 1.7532 -4.5908 0.8275 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260162769.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:39 Heat of formation + Delta-G solvation = -80.126490 kcal Electronic energy + Delta-G solvation = -17264.231497 eV Core-core repulsion = 14261.261021 eV Total energy + Delta-G solvation = -3002.970476 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.15246 -39.23832 -37.43768 -36.00362 -34.60758 -32.28132 -28.95486 -28.42288 -25.75997 -22.52480 -22.20201 -20.96290 -19.49646 -18.33582 -17.13927 -16.90397 -16.07329 -15.49528 -14.83798 -14.74441 -14.56762 -14.08710 -13.52307 -13.26405 -13.03352 -12.31859 -12.26800 -11.58516 -11.11325 -11.07246 -10.86996 -10.54367 -10.40138 -10.22964 -10.07748 -9.46977 -9.30689 -8.97063 -8.43739 -7.80854 -7.56533 -6.14612 -4.24601 1.91165 1.92131 3.18714 3.27219 3.28015 4.20633 4.27005 4.46102 4.82094 4.97766 5.28539 5.43340 5.61838 5.75262 6.01371 6.18670 6.38209 6.47722 6.54446 6.61836 6.75237 6.80477 6.86631 7.19972 7.21328 7.42136 7.47062 7.69928 8.05128 8.20512 8.51521 8.72446 9.33238 10.82549 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.022753 B = 0.011106 C = 0.009750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.311228 B = 2520.537815 C = 2870.982991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.067 3.933 3 Si 0.892 3.108 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.490 4.490 8 H 0.066 0.934 9 C 0.082 3.918 10 C 0.042 3.958 11 C -0.072 4.072 12 C -0.131 4.131 13 C 0.048 3.952 14 O -0.492 6.492 15 C 0.036 3.964 16 F -0.143 7.143 17 C 0.095 3.905 18 O -0.483 6.483 19 C -0.205 4.205 20 C -0.192 4.192 21 H 0.266 0.734 22 H 0.125 0.875 23 H 0.124 0.876 24 H 0.377 0.623 25 H 0.389 0.611 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.944 -4.709 2.411 6.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.527 4.527 8 H 0.084 0.916 9 C 0.082 3.918 10 C 0.041 3.959 11 C -0.091 4.091 12 C -0.149 4.149 13 C 0.003 3.997 14 O -0.300 6.300 15 C 0.015 3.985 16 F -0.121 7.121 17 C 0.049 3.951 18 O -0.292 6.292 19 C -0.243 4.243 20 C -0.230 4.230 21 H 0.077 0.923 22 H 0.143 0.857 23 H 0.142 0.858 24 H 0.231 0.769 25 H 0.246 0.754 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.131 -4.538 2.503 6.055 hybrid contribution 0.386 1.143 0.133 1.214 sum -2.745 -3.395 2.636 5.100 Atomic orbital electron populations 1.69910 1.05685 1.27369 1.47403 1.25059 0.94975 0.99222 0.94509 0.86629 0.79646 0.82765 0.79018 1.20057 1.21169 1.19887 1.20447 0.93335 0.88057 1.50836 0.91557 1.17604 0.91549 0.90092 0.92602 1.19430 0.94871 0.90872 0.90744 1.20629 0.90861 0.98381 0.99184 1.21059 0.99317 1.02506 0.92051 1.18036 0.84038 1.07489 0.90123 1.84893 1.44832 1.35939 1.64327 1.18414 0.93475 1.08285 0.78284 1.91386 1.96525 1.92103 1.32134 1.17949 0.83484 1.03095 0.90619 1.84674 1.28865 1.33817 1.81889 1.23124 1.00404 1.06732 0.94014 1.22874 0.97346 1.00787 1.01959 0.92326 0.85686 0.85767 0.76922 0.75449 0.91301 0.89994 0.90164 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.54 11.09 55.43 0.61 -21.92 15 2 C 0.07 1.68 5.29 -17.82 -0.09 1.59 15 3 Si 0.89 19.74 29.55 -169.99 -5.02 14.72 15 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 15 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 7 C -0.49 -12.28 8.56 -34.44 -0.29 -12.58 15 8 H 0.07 1.67 7.83 -52.49 -0.41 1.26 15 9 C 0.08 1.90 1.61 -156.81 -0.25 1.65 15 10 C 0.04 0.95 3.21 -104.46 -0.33 0.62 15 11 C -0.07 -1.50 8.56 -39.61 -0.34 -1.83 15 12 C -0.13 -2.46 9.98 -39.41 -0.39 -2.85 15 13 C 0.05 0.95 6.71 -39.20 -0.26 0.69 15 14 O -0.49 -8.41 13.37 -19.59 -0.26 -8.67 15 15 C 0.04 0.77 7.32 -39.18 -0.29 0.48 15 16 F -0.14 -3.06 16.95 2.25 0.04 -3.02 15 17 C 0.09 2.14 6.62 -39.20 -0.26 1.88 15 18 O -0.48 -10.67 12.47 -19.59 -0.24 -10.92 15 19 C -0.20 -4.30 9.43 -26.69 -0.25 -4.55 15 20 C -0.19 -4.02 9.94 -26.70 -0.27 -4.28 15 21 H 0.27 6.81 8.32 -40.82 -0.34 6.47 15 22 H 0.13 2.48 7.00 -52.49 -0.37 2.11 15 23 H 0.12 1.97 8.06 -52.49 -0.42 1.55 15 24 H 0.38 4.37 9.06 45.56 0.41 4.78 15 25 H 0.39 7.96 9.00 45.56 0.41 8.37 15 26 H 0.07 1.32 7.12 -51.93 -0.37 0.95 15 27 H 0.08 1.72 8.14 -51.93 -0.42 1.30 15 28 H 0.08 1.63 8.14 -51.93 -0.42 1.21 15 29 H 0.07 1.39 8.14 -51.93 -0.42 0.97 15 LS Contribution 262.78 15.07 3.96 3.96 Total: -1.00 -28.25 262.78 -5.10 -33.36 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -1.15 Total: 11.68 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -3.03 Total: -19.19 kcal Atomic # 7 Polarization: -22.54 SS G_CDS: 0.61 Total: -21.92 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.51 Total: -19.59 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.04 Total: -3.02 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.25 -5.10 -33.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260162769.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.771 kcal (2) G-P(sol) polarization free energy of solvation -28.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds