Wall clock time and date at job start Mon Mar 30 2020 05:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00168 * 2 1 4 4 H 1.48493 * 109.47089 * 240.00615 * 3 2 1 5 5 H 1.48503 * 109.46839 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47333 * 120.00210 * 3 2 1 7 7 C 1.37878 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00173 * 172.31430 * 7 2 1 9 9 C 1.50704 * 119.99730 * 352.31148 * 7 2 1 10 10 C 1.50700 * 115.55269 * 326.10663 * 9 7 2 11 11 C 1.38216 * 119.96580 * 114.69238 * 10 9 7 12 12 C 1.38180 * 120.13817 * 180.02562 * 11 10 9 13 13 C 1.38749 * 120.06754 * 0.02562 * 12 11 10 14 14 O 1.35952 * 120.03560 * 179.97438 * 13 12 11 15 15 C 1.38757 * 119.93119 * 359.69528 * 13 12 11 16 16 F 1.35097 * 120.06937 * 180.28156 * 15 13 12 17 17 C 1.38706 * 119.96276 * 294.67363 * 10 9 7 18 18 O 1.35952 * 120.03662 * 359.97438 * 17 10 9 19 19 C 1.52999 * 117.49833 * 111.77704 * 9 7 2 20 20 C 1.52997 * 117.49830 * 180.43637 * 9 7 2 21 21 H 0.96996 * 120.00321 * 5.01707 * 1 2 3 22 22 H 1.08000 * 119.93551 * 359.97438 * 11 10 9 23 23 H 1.07996 * 119.96548 * 179.97438 * 12 11 10 24 24 H 0.96704 * 114.00304 * 89.99513 * 14 13 12 25 25 H 0.96695 * 114.00001 * 85.97445 * 18 17 10 26 26 H 1.08994 * 117.49998 * 215.00228 * 19 9 7 27 27 H 1.08999 * 117.49981 * 0.02562 * 19 9 7 28 28 H 1.09003 * 117.49915 * 359.97438 * 20 9 7 29 29 H 1.08998 * 117.50444 * 144.97470 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1027 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0772 -1.1982 -0.1256 9 6 1.2611 -2.4934 0.1735 10 6 0.0553 -2.4366 1.0757 11 6 -1.2068 -2.6529 0.5556 12 6 -2.3149 -2.6012 1.3795 13 6 -2.1636 -2.3312 2.7320 14 8 -3.2543 -2.2800 3.5420 15 6 -0.8973 -2.1193 3.2583 16 9 -0.7461 -1.8619 4.5758 17 6 0.2134 -2.1677 2.4272 18 8 1.4553 -1.9559 2.9382 19 6 1.2007 -3.4391 -1.0277 20 6 2.0838 -3.7833 0.1742 21 1 -0.4850 0.8368 -0.0735 22 1 -1.3274 -2.8620 -0.4971 23 1 -3.2999 -2.7703 0.9701 24 1 -3.4892 -3.1295 3.9397 25 1 1.7589 -1.0406 2.8675 26 1 0.2889 -4.0201 -1.1654 27 1 1.6990 -3.1217 -1.9437 28 1 3.1627 -3.6923 0.0484 29 1 1.7532 -4.5908 0.8275 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260162769.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:39 Heat of formation + Delta-G solvation = -99.363650 kcal Electronic energy + Delta-G solvation = -17265.065683 eV Core-core repulsion = 14261.261021 eV Total energy + Delta-G solvation = -3003.804662 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.79237 -40.82989 -38.93765 -37.69906 -36.15981 -34.16057 -30.54710 -30.00122 -27.63490 -24.13667 -23.81313 -22.60761 -21.21465 -19.86936 -18.84968 -18.52205 -17.69257 -17.15696 -16.60295 -16.40546 -16.15273 -15.72162 -15.13001 -14.95543 -14.63625 -13.96649 -13.82906 -13.27469 -12.89372 -12.84607 -12.52510 -12.24850 -12.07512 -11.79841 -11.68860 -11.17651 -11.09714 -10.69052 -10.22707 -9.42009 -9.18985 -8.01711 -6.17112 0.29925 0.37409 1.42492 1.46931 1.51886 2.40919 2.65337 2.99220 3.01575 3.42169 3.64357 3.75418 4.00803 4.21689 4.44089 4.54351 4.76043 4.84841 4.96839 4.99446 5.17698 5.21187 5.27161 5.55349 5.57096 5.73509 5.84244 5.91816 6.37132 6.78289 6.79483 6.89252 7.41688 8.91222 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.022753 B = 0.011106 C = 0.009750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.311228 B = 2520.537815 C = 2870.982991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.034 3.966 3 Si 0.942 3.058 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.502 4.502 8 H 0.056 0.944 9 C 0.053 3.947 10 C 0.025 3.975 11 C -0.078 4.078 12 C -0.122 4.122 13 C 0.060 3.940 14 O -0.495 6.495 15 C 0.015 3.985 16 F -0.147 7.147 17 C 0.075 3.925 18 O -0.490 6.490 19 C -0.194 4.194 20 C -0.184 4.184 21 H 0.261 0.739 22 H 0.132 0.868 23 H 0.159 0.841 24 H 0.405 0.595 25 H 0.391 0.609 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.936 -5.131 2.335 6.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.168 4.168 3 Si 0.769 3.231 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.539 4.539 8 H 0.074 0.926 9 C 0.053 3.947 10 C 0.024 3.976 11 C -0.096 4.096 12 C -0.140 4.140 13 C 0.015 3.985 14 O -0.307 6.307 15 C -0.006 4.006 16 F -0.126 7.126 17 C 0.029 3.971 18 O -0.300 6.300 19 C -0.232 4.232 20 C -0.221 4.221 21 H 0.071 0.929 22 H 0.150 0.850 23 H 0.177 0.823 24 H 0.263 0.737 25 H 0.247 0.753 26 H 0.106 0.894 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.119 -4.989 2.439 6.914 hybrid contribution 0.650 1.223 0.186 1.397 sum -3.470 -3.766 2.625 5.754 Atomic orbital electron populations 1.70015 1.06436 1.27319 1.48368 1.25527 0.95551 1.01289 0.94444 0.85846 0.78534 0.79814 0.78948 1.20078 1.21639 1.19436 1.20616 0.93065 0.89464 1.50767 0.92589 1.17708 0.92667 0.90053 0.94280 1.19458 0.95371 0.92158 0.90650 1.20793 0.90804 0.98265 0.99757 1.21355 1.00301 1.00913 0.91423 1.18095 0.83874 1.05854 0.90726 1.84820 1.43503 1.38260 1.64116 1.18655 0.94239 1.09477 0.78182 1.91364 1.96620 1.92286 1.32322 1.18156 0.83708 1.04123 0.91122 1.84644 1.29296 1.34094 1.81998 1.23113 1.01047 1.05729 0.93313 1.22874 0.97311 0.99957 1.01941 0.92922 0.85047 0.82331 0.73716 0.75279 0.89432 0.90413 0.90112 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.63 11.09 21.45 0.24 -45.39 15 2 C 0.03 1.72 5.29 84.66 0.45 2.16 15 3 Si 0.94 40.50 29.55 68.60 2.03 42.53 15 4 H -0.28 -11.75 7.11 99.48 0.71 -11.04 15 5 H -0.29 -12.61 7.11 99.48 0.71 -11.91 15 6 H -0.27 -11.27 7.11 99.48 0.71 -10.57 15 7 C -0.50 -25.17 8.56 25.60 0.22 -24.95 15 8 H 0.06 2.84 7.83 -2.91 -0.02 2.81 15 9 C 0.05 2.44 1.61 -53.67 -0.09 2.36 15 10 C 0.02 1.10 3.21 -19.76 -0.06 1.04 15 11 C -0.08 -3.09 8.56 22.25 0.19 -2.90 15 12 C -0.12 -4.24 9.98 22.38 0.22 -4.01 15 13 C 0.06 2.22 6.71 22.52 0.15 2.37 15 14 O -0.50 -15.38 13.37 -93.01 -1.24 -16.63 15 15 C 0.01 0.62 7.32 22.53 0.16 0.78 15 16 F -0.15 -6.19 16.95 44.97 0.76 -5.43 15 17 C 0.07 3.36 6.62 22.52 0.15 3.51 15 18 O -0.49 -21.87 12.47 -93.01 -1.16 -23.03 15 19 C -0.19 -7.90 9.43 30.62 0.29 -7.61 15 20 C -0.18 -7.50 9.94 30.62 0.30 -7.19 15 21 H 0.26 13.29 8.32 -92.71 -0.77 12.52 15 22 H 0.13 4.95 7.00 -2.91 -0.02 4.93 15 23 H 0.16 4.37 8.06 -2.91 -0.02 4.35 15 24 H 0.40 7.92 9.06 -74.05 -0.67 7.25 15 25 H 0.39 16.35 9.00 -74.06 -0.67 15.68 15 26 H 0.09 3.19 7.12 -2.39 -0.02 3.17 15 27 H 0.08 3.19 8.14 -2.39 -0.02 3.17 15 28 H 0.08 3.23 8.14 -2.39 -0.02 3.21 15 29 H 0.08 3.06 8.14 -2.39 -0.02 3.04 15 Total: -1.00 -58.25 262.78 2.48 -55.77 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: -0.13 Total: 26.62 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: 1.99 Total: -34.43 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.24 Total: -45.39 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -2.40 Total: -39.65 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 0.76 Total: -5.43 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -58.25 2.48 -55.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260162769.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.596 kcal (2) G-P(sol) polarization free energy of solvation -58.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds