Wall clock time and date at job start Mon Mar 30 2020 05:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.38253 * 119.96519 * 265.00051 * 11 10 9 13 13 C 1.38218 * 120.15823 * 179.97438 * 12 11 10 14 14 C 1.38453 * 120.11583 * 0.04713 * 13 12 11 15 15 F 1.35096 * 120.00721 * 180.02562 * 14 13 12 16 16 C 1.38695 * 119.98996 * 359.97415 * 14 13 12 17 17 C 1.38578 * 119.96488 * 84.72486 * 11 10 9 18 18 O 1.36514 * 131.50565 * 0.03735 * 17 11 10 19 19 C 1.43980 * 105.49014 * 197.26252 * 18 17 11 20 20 O 1.36558 * 131.53284 * 180.02562 * 16 14 13 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 25 25 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 26 26 H 1.07995 * 119.91871 * 0.02562 * 12 11 10 27 27 H 1.07998 * 119.94521 * 180.02562 * 13 12 11 28 28 H 1.08994 * 110.57555 * 91.44065 * 19 18 17 29 29 H 1.09005 * 110.57491 * 214.17042 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.2371 -5.6171 1.1946 13 6 0.5460 -6.8140 1.1999 14 6 0.1064 -7.3676 0.0094 15 9 -0.5695 -8.5373 0.0172 16 6 0.3590 -6.7205 -1.1910 17 6 1.0495 -5.5118 -1.1940 18 8 1.1635 -5.0773 -2.4831 19 6 0.1784 -5.8182 -3.2271 20 8 0.0414 -7.0450 -2.4789 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.8718 -3.6044 -0.8895 25 1 2.8718 -3.6044 0.8904 26 1 1.5785 -5.1880 2.1250 27 1 0.3487 -7.3185 2.1342 28 1 -0.7651 -5.2735 -3.2615 29 1 0.5364 -6.0260 -4.2355 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260197911.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:49 Heat of formation + Delta-G solvation = -113.252527 kcal Electronic energy + Delta-G solvation = -16429.083622 eV Core-core repulsion = 13424.676693 eV Total energy + Delta-G solvation = -3004.406928 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.99422 -43.18188 -39.14188 -37.36012 -35.77618 -33.73517 -31.13887 -30.32409 -26.92574 -26.79255 -24.30020 -23.90550 -22.04286 -19.47698 -19.02473 -18.74628 -18.40021 -17.71706 -16.69695 -16.51593 -16.25315 -15.83065 -15.34058 -15.26312 -14.91589 -14.45951 -14.02602 -13.85637 -13.73282 -13.36787 -13.01722 -12.82603 -12.72707 -12.30396 -11.93294 -11.77114 -11.51311 -11.18558 -10.55154 -9.49993 -9.25374 -8.18741 -6.30006 -0.06028 -0.01811 1.41738 1.42385 1.55526 1.65336 2.34763 2.41546 2.46555 2.94708 3.14899 3.56540 3.71991 3.80252 3.98766 4.12477 4.15491 4.33922 4.52449 4.79047 4.82760 4.92851 5.05230 5.18533 5.30177 5.41025 5.51043 5.74797 5.84393 5.99880 6.23545 6.86560 7.39360 8.93120 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.036751 B = 0.006008 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.699134 B = 4659.562610 C = 5059.740285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.964 3.036 4 H -0.260 1.260 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.540 4.540 8 H 0.064 0.936 9 C 0.038 3.962 10 C -0.062 4.062 11 C -0.073 4.073 12 C -0.075 4.075 13 C -0.125 4.125 14 C 0.096 3.904 15 F -0.136 7.136 16 C -0.025 4.025 17 C 0.044 3.956 18 O -0.321 6.321 19 C 0.204 3.796 20 O -0.317 6.317 21 H 0.263 0.737 22 H 0.000 1.000 23 H -0.018 1.018 24 H 0.055 0.945 25 H 0.086 0.914 26 H 0.175 0.825 27 H 0.188 0.812 28 H 0.096 0.904 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.316 -13.254 -0.268 13.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.578 4.578 8 H 0.082 0.918 9 C 0.001 3.999 10 C -0.099 4.099 11 C -0.074 4.074 12 C -0.092 4.092 13 C -0.143 4.143 14 C 0.076 3.924 15 F -0.115 7.115 16 C -0.070 4.070 17 C -0.001 4.001 18 O -0.237 6.237 19 C 0.094 3.906 20 O -0.233 6.233 21 H 0.072 0.928 22 H 0.018 0.982 23 H 0.001 0.999 24 H 0.073 0.927 25 H 0.104 0.896 26 H 0.193 0.807 27 H 0.205 0.795 28 H 0.113 0.887 29 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.224 -13.238 -0.504 13.304 hybrid contribution -0.222 0.824 -0.637 1.064 sum 1.002 -12.414 -1.141 12.507 Atomic orbital electron populations 1.70110 1.07841 1.27669 1.51767 1.25957 0.95711 1.03297 0.94720 0.85406 0.79192 0.78798 0.77695 1.18419 1.20739 1.20229 1.21710 0.93680 0.92059 1.50385 0.91818 1.18902 0.93963 0.92208 0.94850 1.20518 0.97360 0.89657 1.02390 1.19597 1.00814 0.97444 0.89551 1.21118 0.97142 0.93548 0.97424 1.21289 0.99472 0.96860 0.96696 1.16833 1.00146 0.84737 0.90686 1.91479 1.77871 1.44933 1.97190 1.19894 1.04491 0.96389 0.86202 1.19625 1.00804 0.93402 0.86261 1.87395 1.57049 1.63008 1.16290 1.26180 0.92537 0.76633 0.95291 1.87406 1.86597 1.33902 1.15438 0.92819 0.98172 0.99946 0.92661 0.89564 0.80725 0.79476 0.88661 0.81304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.53 13.29 21.45 0.28 -56.25 15 2 C 0.00 0.05 5.46 84.66 0.46 0.51 15 3 Si 0.96 43.77 29.54 68.60 2.03 45.80 15 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 15 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 15 6 H -0.28 -12.17 7.11 99.48 0.71 -11.47 15 7 C -0.54 -30.36 9.11 25.60 0.23 -30.13 15 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 15 9 C 0.04 1.98 4.95 29.85 0.15 2.13 15 10 C -0.06 -2.53 5.28 29.85 0.16 -2.37 15 11 C -0.07 -2.61 5.14 -19.78 -0.10 -2.71 15 12 C -0.07 -2.04 9.67 22.27 0.22 -1.83 15 13 C -0.12 -3.02 10.02 22.32 0.22 -2.79 15 14 C 0.10 2.84 7.31 22.43 0.16 3.00 15 15 F -0.14 -3.96 17.27 44.97 0.78 -3.18 15 16 C -0.02 -0.83 7.12 22.61 0.16 -0.67 15 17 C 0.04 1.61 6.83 22.58 0.15 1.76 15 18 O -0.32 -11.76 11.39 -76.22 -0.87 -12.63 15 19 C 0.20 5.53 8.90 113.37 1.01 6.54 15 20 O -0.32 -10.05 11.43 -76.74 -0.88 -10.93 15 21 H 0.26 14.92 8.31 -92.71 -0.77 14.15 15 22 H 0.00 -0.01 8.14 -2.39 -0.02 -0.02 15 23 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 15 24 H 0.05 2.33 8.12 -2.39 -0.02 2.31 15 25 H 0.09 3.13 8.05 -2.39 -0.02 3.11 15 26 H 0.18 3.79 8.06 -2.91 -0.02 3.77 15 27 H 0.19 2.96 8.06 -2.91 -0.02 2.93 15 28 H 0.10 2.35 8.14 -2.39 -0.02 2.34 15 29 H 0.17 3.08 8.14 -2.38 -0.02 3.06 15 Total: -1.00 -68.95 264.93 5.33 -63.62 By element: Atomic # 1 Polarization: -1.05 SS G_CDS: 1.16 Total: 0.11 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: 2.83 Total: -26.55 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.28 Total: -56.25 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -1.75 Total: -23.55 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.78 Total: -3.18 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -68.95 5.33 -63.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260197911.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.632 kcal (2) G-P(sol) polarization free energy of solvation -68.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds