Wall clock time and date at job start Mon Mar 30 2020 05:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00143 * 2 1 4 4 H 1.48500 * 109.47370 * 265.14166 * 3 2 1 5 5 H 1.48504 * 109.46901 * 25.14093 * 3 2 1 6 6 H 1.48502 * 109.47188 * 145.13733 * 3 2 1 7 7 C 1.37874 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00056 * 349.91096 * 7 2 1 9 9 C 1.50697 * 120.00317 * 169.91208 * 7 2 1 10 10 C 1.50703 * 115.55350 * 88.80535 * 9 7 2 11 11 C 1.38278 * 119.94034 * 234.68362 * 10 9 7 12 12 C 1.38155 * 120.07253 * 179.74599 * 11 10 9 13 13 C 1.38712 * 119.95754 * 0.56994 * 12 11 10 14 14 O 1.35924 * 120.05732 * 179.70604 * 13 12 11 15 15 C 1.38818 * 119.87667 * 359.42719 * 13 12 11 16 16 Cl 1.73606 * 120.03254 * 180.25499 * 15 13 12 17 17 C 1.38247 * 119.93486 * 54.70001 * 10 9 7 18 18 C 1.52998 * 117.50112 * 234.47895 * 9 7 2 19 19 C 1.53005 * 117.49541 * 303.13799 * 9 7 2 20 20 H 0.96999 * 120.00092 * 0.02562 * 1 2 3 21 21 H 1.07996 * 119.96390 * 0.02562 * 11 10 9 22 22 H 1.07997 * 120.01937 * 180.27791 * 12 11 10 23 23 H 0.96700 * 113.99664 * 269.71779 * 14 13 12 24 24 H 1.07998 * 119.98182 * 359.97438 * 17 10 9 25 25 H 1.09000 * 117.50173 * 215.00201 * 18 9 7 26 26 H 1.09002 * 117.49550 * 0.02571 * 18 9 7 27 27 H 1.08998 * 117.49931 * 359.97438 * 19 9 7 28 28 H 1.09001 * 117.49615 * 144.99560 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5994 1.9871 -1.3950 5 1 1.3990 2.6801 0.5948 6 1 3.4916 1.4720 0.8003 7 6 2.0045 -1.1940 -0.0005 8 1 1.4770 -2.1222 0.1629 9 6 3.4940 -1.2041 -0.2291 10 6 4.3426 -1.0618 1.0082 11 6 5.2940 -0.0610 1.0811 12 6 6.0698 0.0752 2.2162 13 6 5.9021 -0.8002 3.2790 14 8 6.6684 -0.6717 4.3942 15 6 4.9464 -1.8042 3.2037 16 17 4.7286 -2.8980 4.5341 17 6 4.1685 -1.9323 2.0680 18 6 4.0300 -2.0905 -1.3551 19 6 4.0149 -0.5688 -1.5199 20 1 -0.4850 0.8400 -0.0004 21 1 5.4277 0.6177 0.2518 22 1 6.8095 0.8600 2.2740 23 1 7.4906 -1.1801 4.3672 24 1 3.4246 -2.7130 2.0086 25 1 4.9963 -2.5708 -1.2010 26 1 3.3052 -2.6661 -1.9308 27 1 3.2802 -0.1439 -2.2038 28 1 4.9713 -0.0479 -1.4741 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260205661.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:00 Heat of formation + Delta-G solvation = -0.516965 kcal Electronic energy + Delta-G solvation = -14591.312373 eV Core-core repulsion = 12020.130401 eV Total energy + Delta-G solvation = -2571.181972 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.59520 -37.51546 -36.18025 -35.25310 -32.18670 -30.45101 -29.00174 -25.87146 -22.77128 -22.60344 -21.26105 -19.37043 -18.24043 -16.86322 -15.66359 -15.38718 -14.99938 -14.68816 -14.34898 -13.35279 -13.11555 -12.77460 -12.53730 -12.01422 -11.87895 -11.41054 -11.20750 -10.85379 -10.68581 -10.58531 -10.31139 -9.97836 -9.81658 -9.48857 -8.76955 -8.64126 -8.37113 -7.81030 -6.20437 -4.23883 1.51258 1.65958 2.47372 3.26164 3.36612 3.41456 3.94651 4.35707 4.39620 4.81269 5.05726 5.21736 5.41789 5.61783 5.80306 5.89596 5.97368 6.10437 6.28287 6.31835 6.38848 6.58837 6.64707 6.90771 7.01726 7.09374 7.25701 7.62286 7.78755 8.37832 8.81717 9.42440 10.90285 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.026572 B = 0.009044 C = 0.008712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.470309 B = 3095.065277 C = 3213.142076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.084 3.916 3 Si 0.865 3.135 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.246 1.246 7 C -0.489 4.489 8 H 0.081 0.919 9 C 0.027 3.973 10 C -0.010 4.010 11 C -0.107 4.107 12 C -0.138 4.138 13 C 0.085 3.915 14 O -0.490 6.490 15 C -0.061 4.061 16 Cl -0.076 7.076 17 C -0.077 4.077 18 C -0.168 4.168 19 C -0.197 4.197 20 H 0.267 0.733 21 H 0.126 0.874 22 H 0.128 0.872 23 H 0.382 0.618 24 H 0.139 0.861 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.774 -1.932 3.326 13.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.120 4.120 3 Si 0.692 3.308 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.170 1.170 7 C -0.526 4.526 8 H 0.099 0.901 9 C 0.026 3.974 10 C -0.010 4.010 11 C -0.125 4.125 12 C -0.157 4.157 13 C 0.039 3.961 14 O -0.299 6.299 15 C -0.088 4.088 16 Cl -0.047 7.047 17 C -0.095 4.095 18 C -0.205 4.205 19 C -0.234 4.234 20 H 0.077 0.923 21 H 0.144 0.856 22 H 0.146 0.854 23 H 0.236 0.764 24 H 0.157 0.843 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.111 -1.541 3.644 12.741 hybrid contribution 0.631 0.675 0.039 0.925 sum 12.742 -0.866 3.683 13.292 Atomic orbital electron populations 1.69899 1.06481 1.27454 1.48671 1.24949 0.94522 0.99142 0.93352 0.87051 0.81415 0.83259 0.79085 1.19978 1.22039 1.17001 1.20160 0.86576 0.95082 1.50752 0.90118 1.18201 0.94506 1.01026 0.83641 1.19902 0.92174 0.92533 0.96431 1.21120 0.95346 0.98334 0.97726 1.21198 1.01823 0.99995 0.92640 1.18019 0.94897 0.95554 0.87589 1.84868 1.35898 1.72092 1.37039 1.21355 1.01704 0.94749 0.90995 1.98325 1.96632 1.62842 1.46910 1.20820 0.97905 1.00281 0.90517 1.22875 1.00823 0.92625 1.04201 1.23064 1.01268 0.95704 1.03352 0.92343 0.85649 0.85422 0.76386 0.84304 0.90757 0.89038 0.88971 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.96 55.43 0.77 -25.58 15 2 C 0.08 2.34 5.45 -17.82 -0.10 2.24 15 3 Si 0.86 20.76 25.44 -169.99 -4.32 16.43 15 4 H -0.27 -6.36 7.09 56.52 0.40 -5.96 15 5 H -0.29 -7.26 7.11 56.52 0.40 -6.85 15 6 H -0.25 -5.55 4.61 56.52 0.26 -5.29 15 7 C -0.49 -13.01 9.11 -34.44 -0.31 -13.32 15 8 H 0.08 2.34 8.06 -52.48 -0.42 1.91 15 9 C 0.03 0.60 1.11 -156.81 -0.17 0.42 15 10 C -0.01 -0.19 4.65 -104.60 -0.49 -0.68 15 11 C -0.11 -1.95 7.36 -39.60 -0.29 -2.24 15 12 C -0.14 -2.24 9.99 -39.44 -0.39 -2.63 15 13 C 0.08 1.40 6.70 -39.19 -0.26 1.13 15 14 O -0.49 -6.94 12.96 -19.50 -0.25 -7.19 15 15 C -0.06 -1.08 6.33 -39.36 -0.25 -1.33 15 16 Cl -0.08 -1.21 28.51 -51.86 -1.48 -2.69 15 17 C -0.08 -1.49 9.23 -39.57 -0.37 -1.86 15 18 C -0.17 -3.21 9.94 -26.69 -0.27 -3.47 15 19 C -0.20 -3.91 7.36 -26.69 -0.20 -4.10 15 20 H 0.27 7.47 8.31 -40.82 -0.34 7.13 15 21 H 0.13 2.15 6.22 -52.49 -0.33 1.82 15 22 H 0.13 1.73 8.06 -52.49 -0.42 1.30 15 23 H 0.38 3.50 9.06 45.56 0.41 3.91 15 24 H 0.14 2.74 8.06 -52.49 -0.42 2.32 15 25 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 26 H 0.09 1.76 8.14 -51.93 -0.42 1.33 15 27 H 0.09 1.95 7.56 -51.93 -0.39 1.55 15 28 H 0.08 1.32 6.57 -51.93 -0.34 0.98 15 LS Contribution 255.10 15.07 3.84 3.84 Total: -1.00 -29.45 255.10 -6.57 -36.02 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -2.04 Total: 5.00 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -3.10 Total: -25.84 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: 0.77 Total: -25.58 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.25 Total: -7.19 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.32 Total: 16.43 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -1.48 Total: -2.69 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.45 -6.57 -36.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260205661.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.505 kcal (2) G-P(sol) polarization free energy of solvation -29.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds